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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0350500 |
| Transcript ID | LotjaGi4g1v0350500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-tRNA hydrolase family protein; TAIR: AT1G18440.1 Peptidyl-tRNA hydrolase family protein; Swiss-Prot: sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic; TrEMBL-Plants: tr|G7L906|G7L906_MEDTR Peptidyl-tRNA hydrolase family protein; Found in the gene: LotjaGi4g1v0350500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72922571..72926054) extracted from Lotus japonicus Gifu genome v1.2.
AGTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGGCGTTTTGAA TATTGTTTTTATCTATTTTCCATATCCAATTTCCTCGAAGGAACCATGAACGTCGCTACTTGTTCGGTATCATCATTCAA CTTCCCAAGGTGGCGCCGATTCTCAAAACCCCTCATGTATCTCTCTTCTTCTTCCTCCTGCATCATGTCTCCTCAGAATT CCTCAGCTTCCATAACCACCGCTGCATCACCCACCATACAGCCCAAGAAGAAGGAACCTTGGTTAATCGTTGGCCTCGGA AATCCCGGGAAGAAGTACGCTTCTACCCGCCACAATGTCAGTAACAGTAACTCATTGTTAATTCATGTATGATTTTGATT ATTGAACTGCTGACTGTGCTGCATAGCTGAATGGGATTTTGGAATTTTGTTTCAGGTGGGATTTGAGATGGTTGATACTA TTGCTGAAGCTGAAGGGATATCTATCAACAGTGTTTCTTTCAAGGCCCTGTTTGGAAAAGGTAAAAAAATAACCGAATTT TCGCTCTCTGATTAATTTGTGATTAGCATCAAAATGTATTTATTTATCTTCAGTTCTTTCAGTTTTGGTGTCCATGTTGT GATAATTTAAGTGTTTGTATTGTTTTCTTATTGCAGGTGTTATTGGTGATGTACCGGTTATACTTGCAAAACCACAGACT TATATGAATTTAAGCGGTGAATCTGTAAGTCTGCATTCTGTAGAATCTTTAGATGTAATGATAGGGTAGGATAGCAATGC TAAGAGAAGTGTTCAAAAAACATTTTCTCATGTGACTTGATTCTGTATATGGAATTTTTTTTGCCGAATGCTCAAATTTC GTAGTTACAAAATGATGAATAACTGGGGAGGAAACATCATCAACAAAATTACAGTTCTCTGAACCTAGCAAAATTAATTA TGGTCTGATTAAGGTGCATATGGACCAGAAAACATTGCTGAAATATAAAATTATAGGAATCCATTTGATTTTTTATTTAA ATAGCTGGGCTAGAGATTTGCATAGAAACTCTTATTTCTAATTTCTATATATGAGTGACTGTCCAACAAAGTGTCTCAAC TTGTCAGAGAATGGAGGAATCCACAAGAGTTCGAACATTAGTAATTCTTTTTTTCACTTTGGTATTTGACATTTCACATT TGACACCCCTTAGAGTAGCCATGATGAAGCAGTAGTGCTTTGTAGTTATTGATAGTCAGGGATTTGACCATTGGTAGCCA GACACTTGAAAATAGTACCGATATACTTAAACACTTTGGATGCTCCTAACGTACATTCTACATTTTTTTAGGTTTTTTTT ATACCAATACAGATGGGAATACCATATGCATTTATTATCTTTACAAGAAATCATGCTAGATTAAAACATCAATTCTCTTT TTGATTTAAGATTTTTTCTGTTATGTCCATGCTATGCTGATTTTATATGTTGTGTACTACTGTAACGCCATATTCCTATA ATTTCAAACATTTGCCCTGTACCCCGATCCATTTTCAGTTCCTATCATGTCCTTGTTCTATTTCTTACCTGTGCTTCTTA AGATTTTACTGAAATAAAGATTTCTGTTTTGATGCTGATTGGCTGACGTTGAAATCTATTTTGAAGGTTGGGGCCATAGT TTCATATTACAAGATTCCAGTGAAGCAAGTGCTCGTGGTATAGTATATATGCTATGACTACTTTGTTCTTTTTATTTGCT AGTGATGAAGAAAATGTGGAAGGATGATCTTCCCGAGTGTTCAGTTAATAATTTTCTTTTTCAGATCTTTGATGACATGG ATTTGCCTTTTGCTAAATTGCGGCTGCTACCAAAGGGTGGACATGGAGGTCACAATGGGTAACTAAAATATACTTTGGTT TGACATCCTATTAAGTTCATAAATTTGTTTCAAAAAAAGAAGTTCATAAATTAACATGTCCACTGTTGTTCTGAATATCA TGGCCAAGTTTCTTAAATCTTAACATTTCTTAAAGTATAAATGCCATGTTTTTCTTCCTTCTTTATTCTCACCCACAATC TGGGTCACTGATCTGACAATGCTCTACTTGAAGAATGCATTGCTGCAAAATCATTTTTTATGCTATCAACTGGATCAAAC CAAAGATTATTGATGGTTGTGAGATGCTAGGCTTTCACATTTTTATGCCTTATCTTGGATCTTGGATAGTAACTATTTGT TGTCATTGGATGTGGCTAAGTTTTTTGATCTTTGGCTAATGTTCACAATAATCTCCTCCCTTTCTCTTGGGGCAAAGTGT ATTTGAGTAGCTGTGTTGTGTGACTAAGACAATATGCATAGCAAGCATATAGAGAGCGAGAATTACAATATGAAAACGTA AACACCTTCCTTTCTCTGCTGAAATTATATGTGGTGTCGATAAATTAGCTTCCTTGTCCCATCATTCCAAGCACTATTTT GTGCAGGACCCTCTGAAATTGATTCCTTCTGTTAACCTAGCCTTTTGTATTTTAATTTGCTTTGCGTAGTTCAGCATATG CCATGCATGTTTAGGAAAGTCATTGTCGTCATCTCTCTATATTTTGAAAGGCGGTTGAAGACATACAACAAGCCTGTACT ATTTTATATTGATCGTGTTTGTTGTTAAACGGAAGAGAAATGAAGCCTCACTATTTTTGTTCTCCTTGCTATTTGGCAGA ATGAAGAGTGTTATTAATCACTTTAAAGGGAATCTTGGTTTTCCCCGTTTAAGAATTGGTATGTTCATATCGTTTCTAGG ATTATAACATTCATTTATATGATAAAATTTGTAATATCTAATTCTCATTTTGCTTTAATTTTATTAGGCATTGGACGGCC TCCTGGCAAAATGGATCCAGTGGCATTTGTTCTTCGCTCATTCACTAAACAGGAAAGAGAAGAGGTAGGCATTTATTTTC TTTTCATTTTGAACTGATAAGTTGGCACATGAGAGTCCTAAACCTTAATAAATTTTCAGTTGGATTTTACATTACAACAT GGATTAGAAGCTGTGCGGATTCTTTTGCTGGAGGGGTTTGATAAAAGTGCAACGTTTGTAAATAGTTCTAAGAAGATGGA GCAAATAGGTTGAGAAGCGGAAGTCATGGCTTGGATCAGACCAGCTCTGATATCATGTTATGGAATCAGTAGGCAATTGT AGGTATATTTTGTCATATAAGATCATTTTCTGTTTATAAAGATCCATCTCGGGCTGACCACGAGTGGCACTTGACCATTT GTGTTTATCATTGCATTAGATGACCTTTTGTATACTTTTTTCATAATAGCATAATAATAATGAAGAGTCTTTTTTCATAA TAGCATAATGTCTTGAATTTGCTCATCCCATTCCTTTTCCTCATTCTTTGGGCCACTAGACCTTTTGTATACTTTTTCAT AATAGCATAATAATAATGAAGAGTCTTTGACTGCTTGCTCTGGG
CDS sequence (LotjaGi4g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGTCGCTACTTGTTCGGTATCATCATTCAACTTCCCAAGGTGGCGCCGATTCTCAAAACCCCTCATGTATCTCTC TTCTTCTTCCTCCTGCATCATGTCTCCTCAGAATTCCTCAGCTTCCATAACCACCGCTGCATCACCCACCATACAGCCCA AGAAGAAGGAACCTTGGTTAATCGTTGGCCTCGGAAATCCCGGGAAGAAGTACGCTTCTACCCGCCACAATGTGGGATTT GAGATGGTTGATACTATTGCTGAAGCTGAAGGGATATCTATCAACAGTGTTTCTTTCAAGGCCCTGTTTGGAAAAGGTGT TATTGGTGATGTACCGGTTATACTTGCAAAACCACAGACTTATATGAATTTAAGCGGTGAATCTGTTGGGGCCATAGTTT CATATTACAAGATTCCAGTGAAGCAAGTGCTCGTGATCTTTGATGACATGGATTTGCCTTTTGCTAAATTGCGGCTGCTA CCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTTAAAGGGAATCTTGGTTTTCCCCGTTT AAGAATTGGCATTGGACGGCCTCCTGGCAAAATGGATCCAGTGGCATTTGTTCTTCGCTCATTCACTAAACAGGAAAGAG AAGAGTTGGATTTTACATTACAACATGGATTAGAAGCTGTGCGGATTCTTTTGCTGGAGGGGTTTGATAAAAGTGCAACG TTTGTAAATAGTTCTAAGAAGATGGAGCAAATAGGTTGA
Protein sequence (LotjaGi4g1v0350500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVATCSVSSFNFPRWRRFSKPLMYLSSSSSCIMSPQNSSASITTAASPTIQPKKKEPWLIVGLGNPGKKYASTRHNVGF EMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAKPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLL PKGGHGGHNGMKSVINHFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDKSAT FVNSSKKMEQIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 41 | 41 | - | – | |
| PANTHER | 12 | 250 | 239 | 4.1E-128 | – | |
| PANTHER | 12 | 250 | 239 | 4.1E-128 | ||
| Gene3D | 45 | 246 | 202 | 5.8E-74 | ||
| Hamap | 58 | 236 | 179 | 33.199 | ||
| SUPERFAMILY | 58 | 243 | 186 | 4.71E-66 | ||
| Pfam | 60 | 237 | 178 | 2.8E-57 | ||
| TIGRFAM | 60 | 239 | 180 | 9.6E-58 | ||
| ProSitePatterns | 71 | 84 | 14 | - | ||
| ProSitePatterns | 164 | 174 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aminoacyl-tRNA hydrolase activity | Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. |
Expression pattern of LotjaGi4g1v0350500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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