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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0350600 |
| Transcript ID | LotjaGi4g1v0350600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CASP; TAIR: AT3G18480.1 CCAAT-displacement protein alternatively spliced product; Swiss-Prot: sp|Q9LS42|CASP_ARATH Protein CASP; TrEMBL-Plants: tr|G7L912|G7L912_MEDTR CASP carboxy-terminal protein; Found in the gene: LotjaGi4g1v0350600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72927032..72934835) extracted from Lotus japonicus Gifu genome v1.2.
ACTGATTTGGTCAGTGGTTCAATTTTTTGAATTTGTGCTGCTCCACAAAACTATTGTCAAAAGCAGAATGGAAAAACTTG TGGTGCAATAATATTTTTTTTTTCTTTTCAGATTTTGACTTGGAGAAGGAGAAATCCATATTGGATGAACAAGGACTTCG AATTGCAGAGAACCAGGAAAACAGTCAGAAAAATAGGCGGAAGCTTGCAGAGAGCACTAGAAGTATGCATACCTTCACTC GATACTATTTCCAGATTATAGCAAAAAGATACACATAACATAAGGGCTACATTGTGAATCCACCTTACAAGCATTTTAAG TATAATAATTTGGGCTTACATTGTGATCACAGCTGCATTATCGTTCTTTTCCGTAATCTTCACTTCAGTGATATTCATCA TTAGTATTTGTCTGAATTCTGAAAGATTTCCCATTATGCTGTATACAGATTTCAAGAAAGCTTCACCGGAGGATAAGTTG AATTTGTTTAATACCTTGCTTAGGGGGTATCAGGAAGAGGTTGATAATCTTACGAAGAGAGCAAAGTTTGGAGAAAACGC TTTCCTCAACATCTATCAAAAGCTCTATGAAGCCCCAGATCCTTATCCAGCTCTTGCCTCAATTGCTGTGAGTTCCCGCA TTACTTAAATGCTCCATGACAATAACTTGCAGTAAAAACATGACTGTCAATTTTAATGCATATTTTTCTTTTTCATACCT TCATGATAGTACTTCTATGATTTTTATGTTTATGTTAGTGTATTACAGCATGAGAGGAGATGGTTCTGTATATCTTTTTC TCATATCTAAACTATAGAAAAAGTTATTTCTCAAATCTTATGATGTCTTGCTCCTAAATATCAACTGACCCCTCTTTCTT TATGATTATATATTTTCGGGTTTCAGTTAATGGCTAGATGAAGTTGGTTTACATGATTATAGATACTGGTTCAGATTCCC TTAAGAATTTTCTACTTAGCCTGCTTGCACAGTTATATATATGAAACTTGTGTGCATCTACTTGCTTGCTTTTGGGCTAT TGCCACCTATTTTGCTTGTTCATTTTTTGATATATTTATTTGGATAGGAGCAAGATCTCAAGATGTCTGAGCTCGAATCT GAAAACCGAAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAGGCAACTCACTTGAAGAATCAGCAGGCTACGATACG AAGACTTGAAGAACGAAGTAGGCAGTTAGAGCTGCAGGTTATTAATATTTATGATAGTGTTCACTGACTCACTGTACACA ATTACATATAGTAATAGGCTGTTTGTTTCATCCCTGGAGATTAAGCATCAGATTTCTATTTGACATTTAAACTTATGTGT TAGATGGAAGAGAAAGTAAAAGAAATTGTGGAGATTAAGCAGCGCAATCTGGCAGAAGAGAATCAGAAAACATTAGAAAT TTTAAAAGAAAGGTATCTTTTTGGTTCGTATCATCGGTTGTTTGTATATTCAATTAAATACACGAGAACAGTGGACATAA TTTGTTTGTCTGTCCAGCTTTATACATTGACTATGATATTGGAACCATCCTTTCGCTACCTTGTCATTGCTTACCTAGGG AAATTATTCCTTTATATGTAGGGAACAGTTACTGCAGGACCAACTGCAGAGTGCAAAAGAAAGTGTTTCTACTATGCAGA AATTACATGAACTTGCACAAAACAAGTTGTTTGAACTTCGTGCTCAATCTGGTAATCTTATAGTTTTCAAACACTGACCA TGCTTTTTTTACCTGAAATGCAAATATCACAATATAGTCTGACTGCAGCACTGTGCCTTTTCTTTCTGCATATTGAAATT ATAATTGCTCAAAGATTATTCTATATTGAAGAAAATGATATTTTTTATTGAGATTTCAGACGAAGAGAGGGCAGCTAAGC AAGCTGAGGTCAATCTGCTGATGGATGAAGTTGAACGAGCACAAACAATGCTTCTTGGCTTGGAGAGAGAGAAGGTATGT TTCACAAAAAAAATTTTGATATCAAAATGTATTGTTTGTGTTCATGTGTAGGATGCTCGATTGTTTATTTTTTCATGTTT TTGGCTTTCTCCTTTTTTTCCTCAGCATTTACAAATATTATCTCTGTTTTTGCTCCATATTAGCTACTTCCGAAGTTATA ACACTTTGCTGCTTTTATTCTGATAGTGAAAAAAATTAATTTTCTCTGCTGTTGTCAATCTAAAGCCCTGGTGAATACTC CTTTCCCACGCAAAGAAAAATAAGTAATACAGGAGCAATTTTGTGACAAAAACAATATATGAAACCTGAAAGAATTGTTC CTTTTGGAATGACTTTGTTTTTGTAGTCAATTATTATTCTGGAGTTTGGATTTTTTTCCATAACAGGTTTCTCAATATAT TTTTCCTTTCCAGTTAAATTCCTTCTAGATTTTTGTAAGCTATCTTGTATGCACATGATTTCAGCTGACAATTCTACTTT AAACTTTTACTCATTATCCCTTTATCTTAAATGCTTAATGTTCTTTCCAGTTCCACCCATAGGTATAAGTAATAGGATTC TGTGACTATATTATCCAGAAAGGCTATTATCAATGGCTGTAAATGGAATGTTTGTGTTTTTTCCCCTCTGATTGAATGAA TTTTGTCTCAAGCTGCTGATGACTTTCATATTGAGCTAGTCTTGCTGTTTGTTCTTGTTATCCTTTTTTACATGCAGGGG GTTCTCCGATCTCAGTTACAAACCACAAATCAAGATGGTGAAATTAAGAAGAGGTAAGAGTAAGACGGTCCTGTCTTCTT CTTTTTTTCTACTTTTTGGGTAAATGATATCCTGTCACCAAATGTGAACAACACAAACAACTTGCAGCGATAGCTGTACC CATTCACATTTTCCTTTCTAAAATTAAAAAAGGATTCATTTTCAATTTCAAAATCATGGAAAGAAACATATCACTTTTTT AGTTAAAGAATTAATTATGACCACGCCCATCCCTAGCATTATTTTTAATACACATTCAGTTTTGCATGTCCTCCAAAGAT TCTTTGGTATTTTCCTTCCAAAGATTATTGTTGAAAATAACCCCAGTTCAATTTGATAAGAGTGGCTGGCTGAAATACTT TCATCTTTGAGTAATATAATCAGTTTACTTTATGCCATCATACTTTTAGCTTATGCTTTTGTCGGCAATTTTCTACCCAA AATTTAGCACCATAAAGCTTCAGTGGCCTTACGGCTATTTGGTAAAATTTTACTTCCAGTTTGATAGACACTTTCCATTC ACATATTATATTATACTTAAAGCTATCCATTTCGCCTAGCTCAAATTCAATATCTCTTTTAATCTCTCTATTCTTTATAA TGAACACGTCATAGTAAACTTATTCTTCGGTGAACGGCTAGTCAACGTGTATCCATCTGCCTGGCTATCTATATTTGCAC ACTTACTAATAAAGACTGCCCAAATCCTTTTCCTTGTTTTTTTTCTTTTTCTATTACTATATTACTATTTTTGTTTTTGC AGTGATAATTCAGACTCAACTGTTGCACTTGAGAATTCTTTAATTGCCAAAGATAGGCAAATCTCTGAATTGAACATGGA GCTACACAATATTGAAACAACCTTATCAAATGAACGTGAAGAACATATGAAAGATGTCAAAAAATTTACTGCACTGCTCA ATGAAAAGGTGATATCACAAGTGTAATATCAGTCCCTTACATCCTGCCTCTCTATTTTCTTTGATCTATTTCAATCTGAC CATTCTTTAAAAAGGACCATAGTTCTAATTTTCTTGTTCAAAAAATATTTAACTTAACAGCTTTTTCATGACGACTGCAC CAAAGATTGTCAATGCCCGAAGATTTCAATCTCATGTTTTGGGTTTTTTATATTTTGAATGAGCCACAGTCCCAATCCCA AATCAGATGCACTACTGGTAGCTGTGTCCTGTTTTGTAATTAAAACTAAAGTATATAAATCTATTTACGCATGCAATTTT TTTTTGTCCTTTTCCTGTTTATCAAATTATTGAACCTTTTTTTCTTGACGAGTGGTTTTTGACCATCTTGTTCACATTAT CTCATCTCATTGGGGCATGGAGGATCTTAATGAAGTGTTGCTTCTAGGATGATGAGAATTTGTTGTCCTTACTTGAGATA TGAAAATGCTTCATAATGCACTTCCTTTGTGGGATCTGGTGTATGATTTCCTCACTTTATGAGTTAGTAAAGCCTTCTCT AACGATAAAAGAATAAAATTCTCATAGTATAAACAATTATATTATGTGTCTGCTTGTGACTTCAAGGCTTTTTATAATTG TTTTTTCAGTGTATTTTGCTAAATTGTGCATGTTCTATGTTTTAGTTGTTCGGTTACATTTTTCCGGTATCCTTATCTTA ATATAGGAGGCTTCTATTGAGGCAATGAGGAAAGAGCTTCACGCAAGGCCAACAGAAAAGATGGTTGATGATTTGCGTAA GAAAGTGAAGATTTTGCAGGTGATTTATTGTTCTTTTATATTGGCCTTTTACGTAACCTCTCATTTTGGGCACTCAGCTC TGCACTGTCCATCTTACTCATGGCTATTCATTCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTAGCA ACAAGTGGGGAGGAGATGAGCAAGATGGAATCTCTTCTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAATT GAAGGTACGACATGGTTCTTATTTCTTAAGCAATTAAGACTTCTGATCCCATCCCCAATCTTCTTAAGAAACTAATAATA GGTAAAGCATCAATCAACTCACATAATTCTAACTATGTTTGGTATAGTTTCCCACGAAGCTGTGGACTAATAGTGCTTCC TGTACTTTGTGCATTTGACCCTTACTCATGTTGTGGGATCATTGAACATTGGAAAAAACTTATTTTTCAAGAGATGATCT GCCAGTGTTATCTCTATTGTTATTTAAATGTAGTTCTACCATTTTTCCAGGTGAAACTTTCTGAAAAAACTTCTTCACTC GAAATAGCAGAACAGAAGGCAGTGGAACTTACTACTAAGGTTAATGAACAACAAAAACTGATACAAAAGTTGGAAGATGA TATATTAAAGGTTTGGAACAACTACTACTGAATTACTGTATCTACCACTAATAGAAGACAATCCCCTTTATTTTTCTCCT TTCTTCTGCTTTTTATTTATTAAATCACCTAACTGCTCTTTGGTTCAGGGCTATAGTTCTAATTCCAAAGATCATAAAGG ATTCCCTGATGACTGGGATCTATCCGAGGCTGGTAGGAGTGAGGTGTCTGAGGTGAATTTCTCTTTCCAATATGCTATTT TGACCAACCTTCACTAGTTCTGAATCATATTCTTCGACAGAAGCGGAATATGAGCAACTGAAAAGATTTATAATCTTGAT CGTGGTTTATCACTGTTGTTTTCTTATGAGCAAACCTAATTAATTATCATTATTGATCTTGGACAGAATTGAAAATTTTC TTCTTGTATTAGATAATTTTCTTGTGTCTGTTTGGCTACACTTTGAAGATTTTCTTCTGCATAAAGTTTCATTTCTGCTC GCTTAAACTTTAAGTTTTCTTATATTGCTTCTGCTGCATCAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAGAG CTCAATGCTTAAGGTAATCTGTAATCAGAGAGATCGATTCAGAATACGCTTGCGAGAGACAGAAGAGGTATCTTTATAGT CAATATCGATTTAGAACACTCATCTGTTCTTTCTATTTGACATTACTTCCATCAAATTTTAGATTTTATTGTGATGGTGG ACTTGGGTGAATTCTTCACGTTTAATAGGAAATAAGGCAGTTGAAGGAGAAGATTCGGGTACTAATAGGGGAACTTGAAA AGACCAAAGCAGATAATGTCAAGCTATATGGGAAGATTCGTTATGTCCAAGATTACAATACGGCGAAAGTGGTCTCTAGG GGTTCTAAAAAGGTGATGTAAATTCTCTTTATTTAAACACCGTGCTATTACTTTCTTAAATTTTTCCCCTAACCTAGTTT ATCCTGAAGAGGAGATTTATTTGTGATTTTTTGTTCAGTATGCAGAAGATCTTGAAAGTGGTTTCACGTCAGATGTTGAA TCTAAATACAAGAAGATATACGAGGATGATATAAATCCTTTTGCTGCATTCTCAAAAAAGGTGGGGCATTTTCTATACCA TCACATCCCCTAAGTGAAGTGTCATTACCTTTTTATCAGTATACGTCTTTTTGAAGTTTTTGTTTAGTGCCACATGAAGT CTGTATAAGTTGACTCAGCAAATTTTTCTGCCTAATATAAAAAAACCATATAGTAAGATTTTCAAAAGAAGGTTCATTAA TAGCTTAAGTGCTTAACTTCACTCTAACAACTGTTTGTGTTTGCAAAATAATTTCTATCTAAAATATGAAGTTTTCTGTT ACAATAATGAGATTGGAAAATAGGAATTTCACTAGTAATCAGCTCAGGGAACAATGACTCATGTCTTGATGGGTTGGAAA GAGTGGAGAGAGAAAGAATCAAAAGGAATCCTCACGTAATGTGTATGAGAGTGAACATCTGTGTCACCTAGTATCATATT TATGTTCATGTTACAGTAGTACAAAGATTAGTGCAATAGTATAAATAGTAATGATTAATATATACAGTAAGGAAACTACT TCTACAGAGAAAATCCGAACTTTTGTTTCAGTACATGAGAAAGACCGAACTTCCATTCGTTAAATAGCTTTTGTTGAAGC AATTGAACACTGGTACTAGGGGATTTGTTTATGAGAAATTATTCTGTTTAAATCTCCTTATATCATCCCCCACTTTACCT TGCACGGAGAGTGGAGCAAGGAATTGGGTTGATCTTAGAAACACGAAAAGTTGAGCTCTCACTATATATGCTTTATTTTC AATCAAATACCATTCAATTCTGGTTTTAAGCAGATCTATCTGTGCTACATGAAATTAGGAAAGGGATCAAAGATACAAGG AGTTGGGATTCAGGGACAGAATCACACTCAGCAGCGGACGTTTTCTTCTTGGTAACAAGTAAGCTTCTGCCTCATTGCAT ATGCTCTCCAATTCCAATGTTTCTAATTTCTCCTGTTTGAATGATCTGTTCATCTGTTTGGTATTGTGATTGAGGGAGAA AACTTTTCAAGTCCTTGTAATACAATGATAATGATACATCCTTCCAAATGGTAATTTTAACTATTGCTGTTTGTTTATGT GAATAGTTATTTGATTAAGAATGCTCTTGCAGGTATGCCCGTACCTTTGCATTCTTTTATACCATCGGGCTGCATATGTT GGTCTTTACCTGTCTCTATCGAATGTCGGCTCTGAGTTATCTTAGGTATATATCTGATGATAAACTTCGTTGTTATGACT TCTACACATGAATTTCACTTACTCTCGTCCTTTTCATTCCATTCAGCCATGGCCCAGAGGAACCTCTGATCGGAGCGAGG AAGGTTGATCTTCCGCGTGGACCTTAGTGGATATACAACTTATTTTCTGTAGTCAGTTTTCAGATGGAATGAAAACAAAT TGTCAATATTCTAATAATATCAAGTGTCTTGTACATATAACAACAGTGTTTTGTTCTGATATATATATTGATGCAATGAA ATATAGAGGTTCTTTCTGGTGTTAGGCTTTCGTTCCCGTGTCTCTCAGATGGATTTGTCGACGTCGTGTCCATGCTGATG CAGGGTTTAACCATGAACTTCAGAGAGAAAACATCTTCCTTATT
CDS sequence (LotjaGi4g1v0350600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGCTCGAATCTGAAAACCGAAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAGGCAACTCACTTGAAGAA TCAGCAGGCTACGATACGAAGACTTGAAGAACGAAGTAGGCAGTTAGAGCTGCAGATGGAAGAGAAAGTAAAAGAAATTG TGGAGATTAAGCAGCGCAATCTGGCAGAAGAGAATCAGAAAACATTAGAAATTTTAAAAGAAAGGGAACAGTTACTGCAG GACCAACTGCAGAGTGCAAAAGAAAGTGTTTCTACTATGCAGAAATTACATGAACTTGCACAAAACAAGTTGTTTGAACT TCGTGCTCAATCTGACGAAGAGAGGGCAGCTAAGCAAGCTGAGGTCAATCTGCTGATGGATGAAGTTGAACGAGCACAAA CAATGCTTCTTGGCTTGGAGAGAGAGAAGGGGGTTCTCCGATCTCAGTTACAAACCACAAATCAAGATGGTGAAATTAAG AAGAGTGATAATTCAGACTCAACTGTTGCACTTGAGAATTCTTTAATTGCCAAAGATAGGCAAATCTCTGAATTGAACAT GGAGCTACACAATATTGAAACAACCTTATCAAATGAACGTGAAGAACATATGAAAGATGTCAAAAAATTTACTGCACTGC TCAATGAAAAGGAGGCTTCTATTGAGGCAATGAGGAAAGAGCTTCACGCAAGGCCAACAGAAAAGATGGTTGATGATTTG CGTAAGAAAGTGAAGATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTAGCAACAAGTGGGGA GGAGATGAGCAAGATGGAATCTCTTCTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAATTGAAGGTGAAAC TTTCTGAAAAAACTTCTTCACTCGAAATAGCAGAACAGAAGGCAGTGGAACTTACTACTAAGGTTAATGAACAACAAAAA CTGATACAAAAGTTGGAAGATGATATATTAAAGGGCTATAGTTCTAATTCCAAAGATCATAAAGGATTCCCTGATGACTG GGATCTATCCGAGGCTGGTAGGAGTGAGGTGTCTGAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAGAGCTCAA TGCTTAAGGTAATCTGTAATCAGAGAGATCGATTCAGAATACGCTTGCGAGAGACAGAAGAGGAAATAAGGCAGTTGAAG GAGAAGATTCGGGTACTAATAGGGGAACTTGAAAAGACCAAAGCAGATAATGTCAAGCTATATGGGAAGATTCGTTATGT CCAAGATTACAATACGGCGAAAGTGGTCTCTAGGGGTTCTAAAAAGTATGCAGAAGATCTTGAAAGTGGTTTCACGTCAG ATGTTGAATCTAAATACAAGAAGATATACGAGGATGATATAAATCCTTTTGCTGCATTCTCAAAAAAGGAAAGGGATCAA AGATACAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCAGCGGACGTTTTCTTCTTGGTAACAAGTATGCCCGTAC CTTTGCATTCTTTTATACCATCGGGCTGCATATGTTGGTCTTTACCTGTCTCTATCGAATGTCGGCTCTGAGTTATCTTA GCCATGGCCCAGAGGAACCTCTGATCGGAGCGAGGAAGGTTGATCTTCCGCGTGGACCTTAG
Protein sequence (LotjaGi4g1v0350600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERSRQLELQMEEKVKEIVEIKQRNLAEENQKTLEILKEREQLLQ DQLQSAKESVSTMQKLHELAQNKLFELRAQSDEERAAKQAEVNLLMDEVERAQTMLLGLEREKGVLRSQLQTTNQDGEIK KSDNSDSTVALENSLIAKDRQISELNMELHNIETTLSNEREEHMKDVKKFTALLNEKEASIEAMRKELHARPTEKMVDDL RKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQK LIQKLEDDILKGYSSNSKDHKGFPDDWDLSEAGRSEVSENMDQRHALDQDQSSMLKVICNQRDRFRIRLRETEEEIRQLK EKIRVLIGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKKYAEDLESGFTSDVESKYKKIYEDDINPFAAFSKKERDQ RYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHMLVFTCLYRMSALSYLSHGPEEPLIGARKVDLPRGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 503 | 503 | - | – | |
| Coils | 1 | 89 | 89 | - | – | |
| PANTHER | 2 | 531 | 530 | 5.1E-151 | – | |
| PANTHER | 2 | 531 | 530 | 5.1E-151 | – | |
| Coils | 115 | 142 | 28 | - | – | |
| Coils | 182 | 202 | 21 | - | – | |
| Coils | 207 | 227 | 21 | - | – | |
| Coils | 287 | 328 | 42 | - | – | |
| Pfam | 304 | 529 | 226 | 5.9E-61 | ||
| Coils | 375 | 416 | 42 | - | – | |
| Phobius | 504 | 525 | 22 | - | – | |
| TMHMM | 508 | 525 | 18 | - | – | |
| Phobius | 526 | 553 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intra-Golgi vesicle-mediated transport | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). | ||
| Cellular component | Integral component of Golgi membrane | The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0350600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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