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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0350600 |
| Transcript ID | LotjaGi4g1v0350600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CASP; TAIR: AT3G18480.1 CCAAT-displacement protein alternatively spliced product; Swiss-Prot: sp|Q9LS42|CASP_ARATH Protein CASP; TrEMBL-Plants: tr|G7L912|G7L912_MEDTR CASP carboxy-terminal protein; Found in the gene: LotjaGi4g1v0350600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72927289..72934802) extracted from Lotus japonicus Gifu genome v1.2.
TGTGCTGCTCCACAAAACTATTGTCAAAAGCAGAATGGAAAAACTTGTGGTGCAATAATATTTTTTTTTTCTTTTCAGAT TTTGACTTGGAGAAGGAGAAATCCATATTGGATGAACAAGGACTTCGAATTGCAGAGAACCAGGAAAACAGTCAGAAAAA TAGGCGGAAGCTTGCAGAGAGCACTAGAAGTATGCATACCTTCACTCGATACTATTTCCAGATTATAGCAAAAAGATACA CATAACATAAGGGCTACATTGTGAATCCACCTTACAAGCATTTTAAGTATAATAATTTGGGCTTACATTGTGATCACAGC TGCATTATCGTTCTTTTCCGTAATCTTCACTTCAGTGATATTCATCATTAGTATTTGTCTGAATTCTGAAAGATTTCCCA TTATGCTGTATACAGATTTCAAGAAAGCTTCACCGGAGGATAAGTTGAATTTGTTTAATACCTTGCTTAGGGGGTATCAG GAAGAGGTTGATAATCTTACGAAGAGAGCAAAGTTTGGAGAAAACGCTTTCCTCAACATCTATCAAAAGCTCTATGAAGC CCCAGATCCTTATCCAGCTCTTGCCTCAATTGCTGTGAGTTCCCGCATTACTTAAATGCTCCATGACAATAACTTGCAGT AAAAACATGACTGTCAATTTTAATGCATATTTTTCTTTTTCATACCTTCATGATAGTACTTCTATGATTTTTATGTTTAT GTTAGTGTATTACAGCATGAGAGGAGATGGTTCTGTATATCTTTTTCTCATATCTAAACTATAGAAAAAGTTATTTCTCA AATCTTATGATGTCTTGCTCCTAAATATCAACTGACCCCTCTTTCTTTATGATTATATATTTTCGGGTTTCAGTTAATGG CTAGATGAAGTTGGTTTACATGATTATAGATACTGGTTCAGATTCCCTTAAGAATTTTCTACTTAGCCTGCTTGCACAGT TATATATATGAAACTTGTGTGCATCTACTTGCTTGCTTTTGGGCTATTGCCACCTATTTTGCTTGTTCATTTTTTGATAT ATTTATTTGGATAGGAGCAAGATCTCAAGATGTCTGAGCTCGAATCTGAAAACCGAAAAATGAAAGTTGAGCTTGAGGAA TTTAGAACAGAGGCAACTCACTTGAAGAATCAGCAGGCTACGATACGAAGACTTGAAGAACGAAGTAGGCAGTTAGAGCT GCAGGTTATTAATATTTATGATAGTGTTCACTGACTCACTGTACACAATTACATATAGTAATAGGCTGTTTGTTTCATCC CTGGAGATTAAGCATCAGATTTCTATTTGACATTTAAACTTATGTGTTAGATGGAAGAGAAAGTAAAAGAAATTGTGGAG ATTAAGCAGCGCAATCTGGCAGAAGAGAATCAGAAAACATTAGAAATTTTAAAAGAAAGGTATCTTTTTGGTTCGTATCA TCGGTTGTTTGTATATTCAATTAAATACACGAGAACAGTGGACATAATTTGTTTGTCTGTCCAGCTTTATACATTGACTA TGATATTGGAACCATCCTTTCGCTACCTTGTCATTGCTTACCTAGGGAAATTATTCCTTTATATGTAGGGAACAGTTACT GCAGGACCAACTGCAGAGTGCAAAAGAAAGTGTTTCTACTATGCAGAAATTACATGAACTTGCACAAAACAAGTTGTTTG AACTTCGTGCTCAATCTGGTAATCTTATAGTTTTCAAACACTGACCATGCTTTTTTTACCTGAAATGCAAATATCACAAT ATAGTCTGACTGCAGCACTGTGCCTTTTCTTTCTGCATATTGAAATTATAATTGCTCAAAGATTATTCTATATTGAAGAA AATGATATTTTTTATTGAGATTTCAGACGAAGAGAGGGCAGCTAAGCAAGCTGAGGTCAATCTGCTGATGGATGAAGTTG AACGAGCACAAACAATGCTTCTTGGCTTGGAGAGAGAGAAGGTATGTTTCACAAAAAAAATTTTGATATCAAAATGTATT GTTTGTGTTCATGTGTAGGATGCTCGATTGTTTATTTTTTCATGTTTTTGGCTTTCTCCTTTTTTTCCTCAGCATTTACA AATATTATCTCTGTTTTTGCTCCATATTAGCTACTTCCGAAGTTATAACACTTTGCTGCTTTTATTCTGATAGTGAAAAA AATTAATTTTCTCTGCTGTTGTCAATCTAAAGCCCTGGTGAATACTCCTTTCCCACGCAAAGAAAAATAAGTAATACAGG AGCAATTTTGTGACAAAAACAATATATGAAACCTGAAAGAATTGTTCCTTTTGGAATGACTTTGTTTTTGTAGTCAATTA TTATTCTGGAGTTTGGATTTTTTTCCATAACAGGTTTCTCAATATATTTTTCCTTTCCAGTTAAATTCCTTCTAGATTTT TGTAAGCTATCTTGTATGCACATGATTTCAGCTGACAATTCTACTTTAAACTTTTACTCATTATCCCTTTATCTTAAATG CTTAATGTTCTTTCCAGTTCCACCCATAGGTATAAGTAATAGGATTCTGTGACTATATTATCCAGAAAGGCTATTATCAA TGGCTGTAAATGGAATGTTTGTGTTTTTTCCCCTCTGATTGAATGAATTTTGTCTCAAGCTGCTGATGACTTTCATATTG AGCTAGTCTTGCTGTTTGTTCTTGTTATCCTTTTTTACATGCAGGGGGTTCTCCGATCTCAGTTACAAACCACAAATCAA GATGGTGAAATTAAGAAGAGGTAAGAGTAAGACGGTCCTGTCTTCTTCTTTTTTTCTACTTTTTGGGTAAATGATATCCT GTCACCAAATGTGAACAACACAAACAACTTGCAGCGATAGCTGTACCCATTCACATTTTCCTTTCTAAAATTAAAAAAGG ATTCATTTTCAATTTCAAAATCATGGAAAGAAACATATCACTTTTTTAGTTAAAGAATTAATTATGACCACGCCCATCCC TAGCATTATTTTTAATACACATTCAGTTTTGCATGTCCTCCAAAGATTCTTTGGTATTTTCCTTCCAAAGATTATTGTTG AAAATAACCCCAGTTCAATTTGATAAGAGTGGCTGGCTGAAATACTTTCATCTTTGAGTAATATAATCAGTTTACTTTAT GCCATCATACTTTTAGCTTATGCTTTTGTCGGCAATTTTCTACCCAAAATTTAGCACCATAAAGCTTCAGTGGCCTTACG GCTATTTGGTAAAATTTTACTTCCAGTTTGATAGACACTTTCCATTCACATATTATATTATACTTAAAGCTATCCATTTC GCCTAGCTCAAATTCAATATCTCTTTTAATCTCTCTATTCTTTATAATGAACACGTCATAGTAAACTTATTCTTCGGTGA ACGGCTAGTCAACGTGTATCCATCTGCCTGGCTATCTATATTTGCACACTTACTAATAAAGACTGCCCAAATCCTTTTCC TTGTTTTTTTTCTTTTTCTATTACTATATTACTATTTTTGTTTTTGCAGTGATAATTCAGACTCAACTGTTGCACTTGAG AATTCTTTAATTGCCAAAGATAGGCAAATCTCTGAATTGAACATGGAGCTACACAATATTGAAACAACCTTATCAAATGA ACGTGAAGAACATATGAAAGATGTCAAAAAATTTACTGCACTGCTCAATGAAAAGGTGATATCACAAGTGTAATATCAGT CCCTTACATCCTGCCTCTCTATTTTCTTTGATCTATTTCAATCTGACCATTCTTTAAAAAGGACCATAGTTCTAATTTTC TTGTTCAAAAAATATTTAACTTAACAGCTTTTTCATGACGACTGCACCAAAGATTGTCAATGCCCGAAGATTTCAATCTC ATGTTTTGGGTTTTTTATATTTTGAATGAGCCACAGTCCCAATCCCAAATCAGATGCACTACTGGTAGCTGTGTCCTGTT TTGTAATTAAAACTAAAGTATATAAATCTATTTACGCATGCAATTTTTTTTTGTCCTTTTCCTGTTTATCAAATTATTGA ACCTTTTTTTCTTGACGAGTGGTTTTTGACCATCTTGTTCACATTATCTCATCTCATTGGGGCATGGAGGATCTTAATGA AGTGTTGCTTCTAGGATGATGAGAATTTGTTGTCCTTACTTGAGATATGAAAATGCTTCATAATGCACTTCCTTTGTGGG ATCTGGTGTATGATTTCCTCACTTTATGAGTTAGTAAAGCCTTCTCTAACGATAAAAGAATAAAATTCTCATAGTATAAA CAATTATATTATGTGTCTGCTTGTGACTTCAAGGCTTTTTATAATTGTTTTTTCAGTGTATTTTGCTAAATTGTGCATGT TCTATGTTTTAGTTGTTCGGTTACATTTTTCCGGTATCCTTATCTTAATATAGGAGGCTTCTATTGAGGCAATGAGGAAA GAGCTTCACGCAAGGCCAACAGAAAAGATGGTTGATGATTTGCGTAAGAAAGTGAAGATTTTGCAGGTGATTTATTGTTC TTTTATATTGGCCTTTTACGTAACCTCTCATTTTGGGCACTCAGCTCTGCACTGTCCATCTTACTCATGGCTATTCATTC AGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTAGCAACAAGTGGGGAGGAGATGAGCAAGATGGAATCT CTTCTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAATTGAAGGTACGACATGGTTCTTATTTCTTAAGCAA TTAAGACTTCTGATCCCATCCCCAATCTTCTTAAGAAACTAATAATAGGTAAAGCATCAATCAACTCACATAATTCTAAC TATGTTTGGTATAGTTTCCCACGAAGCTGTGGACTAATAGTGCTTCCTGTACTTTGTGCATTTGACCCTTACTCATGTTG TGGGATCATTGAACATTGGAAAAAACTTATTTTTCAAGAGATGATCTGCCAGTGTTATCTCTATTGTTATTTAAATGTAG TTCTACCATTTTTCCAGGTGAAACTTTCTGAAAAAACTTCTTCACTCGAAATAGCAGAACAGAAGGCAGTGGAACTTACT ACTAAGGTTAATGAACAACAAAAACTGATACAAAAGTTGGAAGATGATATATTAAAGGTTTGGAACAACTACTACTGAAT TACTGTATCTACCACTAATAGAAGACAATCCCCTTTATTTTTCTCCTTTCTTCTGCTTTTTATTTATTAAATCACCTAAC TGCTCTTTGGTTCAGGGCTATAGTTCTAATTCCAAAGATCATAAAGGATTCCCTGATGACTGGGATCTATCCGAGGCTGG TAGGAGTGAGGTGTCTGAGGTGAATTTCTCTTTCCAATATGCTATTTTGACCAACCTTCACTAGTTCTGAATCATATTCT TCGACAGAAGCGGAATATGAGCAACTGAAAAGATTTATAATCTTGATCGTGGTTTATCACTGTTGTTTTCTTATGAGCAA ACCTAATTAATTATCATTATTGATCTTGGACAGAATTGAAAATTTTCTTCTTGTATTAGATAATTTTCTTGTGTCTGTTT GGCTACACTTTGAAGATTTTCTTCTGCATAAAGTTTCATTTCTGCTCGCTTAAACTTTAAGTTTTCTTATATTGCTTCTG CTGCATCAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAGAGCTCAATGCTTAAGGTAATCTGTAATCAGAGAGA TCGATTCAGAATACGCTTGCGAGAGACAGAAGAGGTATCTTTATAGTCAATATCGATTTAGAACACTCATCTGTTCTTTC TATTTGACATTACTTCCATCAAATTTTAGATTTTATTGTGATGGTGGACTTGGGTGAATTCTTCACGTTTAATAGGAAAT AAGGCAGTTGAAGGAGAAGATTCGGGTACTAATAGGGGAACTTGAAAAGACCAAAGCAGATAATGTCAAGCTATATGGGA AGATTCGTTATGTCCAAGATTACAATACGGCGAAAGTGGTCTCTAGGGGTTCTAAAAAGGTGATGTAAATTCTCTTTATT TAAACACCGTGCTATTACTTTCTTAAATTTTTCCCCTAACCTAGTTTATCCTGAAGAGGAGATTTATTTGTGATTTTTTG TTCAGTATGCAGAAGATCTTGAAAGTGGTTTCACGTCAGATGTTGAATCTAAATACAAGAAGATATACGAGGATGATATA AATCCTTTTGCTGCATTCTCAAAAAAGGTGGGGCATTTTCTATACCATCACATCCCCTAAGTGAAGTGTCATTACCTTTT TATCAGTATACGTCTTTTTGAAGTTTTTGTTTAGTGCCACATGAAGTCTGTATAAGTTGACTCAGCAAATTTTTCTGCCT AATATAAAAAAACCATATAGTAAGATTTTCAAAAGAAGGTTCATTAATAGCTTAAGTGCTTAACTTCACTCTAACAACTG TTTGTGTTTGCAAAATAATTTCTATCTAAAATATGAAGTTTTCTGTTACAATAATGAGATTGGAAAATAGGAATTTCACT AGTAATCAGCTCAGGGAACAATGACTCATGTCTTGATGGGTTGGAAAGAGTGGAGAGAGAAAGAATCAAAAGGAATCCTC ACGTAATGTGTATGAGAGTGAACATCTGTGTCACCTAGTATCATATTTATGTTCATGTTACAGTAGTACAAAGATTAGTG CAATAGTATAAATAGTAATGATTAATATATACAGTAAGGAAACTACTTCTACAGAGAAAATCCGAACTTTTGTTTCAGTA CATGAGAAAGACCGAACTTCCATTCGTTAAATAGCTTTTGTTGAAGCAATTGAACACTGGTACTAGGGGATTTGTTTATG AGAAATTATTCTGTTTAAATCTCCTTATATCATCCCCCACTTTACCTTGCACGGAGAGTGGAGCAAGGAATTGGGTTGAT CTTAGAAACACGAAAAGTTGAGCTCTCACTATATATGCTTTATTTTCAATCAAATACCATTCAATTCTGGTTTTAAGCAG ATCTATCTGTGCTACATGAAATTAGGAAAGGGATCAAAGATACAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCA GCGGACGTTTTCTTCTTGGTAACAAGTAAGCTTCTGCCTCATTGCATATGCTCTCCAATTCCAATGTTTCTAATTTCTCC TGTTTGAATGATCTGTTCATCTGTTTGGTATTGTGATTGAGGGAGAAAACTTTTCAAGTCCTTGTAATACAATGATAATG ATACATCCTTCCAAATGGTAATTTTAACTATTGCTGTTTGTTTATGTGAATAGTTATTTGATTAAGAATGCTCTTGCAGG TATGCCCGTACCTTTGCATTCTTTTATACCATCGGGCTGCATATGTTGGTCTTTACCTGTCTCTATCGAATGTCGGCTCT GAGTTATCTTAGGTATATATCTGATGATAAACTTCGTTGTTATGACTTCTACACATGAATTTCACTTACTCTCGTCCTTT TCATTCCATTCAGCCATGGCCCAGAGGAACCTCTGATCGGAGCGAGGAAGGTTGATCTTCCGCGTGGACCTTAG
CDS sequence (LotjaGi4g1v0350600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGCTCGAATCTGAAAACCGAAAAATGAAAGTTGAGCTTGAGGAATTTAGAACAGAGGCAACTCACTTGAAGAA TCAGCAGGCTACGATACGAAGACTTGAAGAACGAAGTAGGCAGTTAGAGCTGCAGATGGAAGAGAAAGTAAAAGAAATTG TGGAGATTAAGCAGCGCAATCTGGCAGAAGAGAATCAGAAAACATTAGAAATTTTAAAAGAAAGGGAACAGTTACTGCAG GACCAACTGCAGAGTGCAAAAGAAAGTGTTTCTACTATGCAGAAATTACATGAACTTGCACAAAACAAGTTGTTTGAACT TCGTGCTCAATCTGACGAAGAGAGGGCAGCTAAGCAAGCTGAGGTCAATCTGCTGATGGATGAAGTTGAACGAGCACAAA CAATGCTTCTTGGCTTGGAGAGAGAGAAGGGGGTTCTCCGATCTCAGTTACAAACCACAAATCAAGATGGTGAAATTAAG AAGAGTGATAATTCAGACTCAACTGTTGCACTTGAGAATTCTTTAATTGCCAAAGATAGGCAAATCTCTGAATTGAACAT GGAGCTACACAATATTGAAACAACCTTATCAAATGAACGTGAAGAACATATGAAAGATGTCAAAAAATTTACTGCACTGC TCAATGAAAAGGAGGCTTCTATTGAGGCAATGAGGAAAGAGCTTCACGCAAGGCCAACAGAAAAGATGGTTGATGATTTG CGTAAGAAAGTGAAGATTTTGCAGGCAGTGGGTTATAATTCAATTGAGGCTGAAGACTGGGAAGTAGCAACAAGTGGGGA GGAGATGAGCAAGATGGAATCTCTTCTTCTTGATAAGAACCGAAAAATGGAACACGAGCTAACACAATTGAAGGTGAAAC TTTCTGAAAAAACTTCTTCACTCGAAATAGCAGAACAGAAGGCAGTGGAACTTACTACTAAGGTTAATGAACAACAAAAA CTGATACAAAAGTTGGAAGATGATATATTAAAGGGCTATAGTTCTAATTCCAAAGATCATAAAGGATTCCCTGATGACTG GGATCTATCCGAGGCTGGTAGGAGTGAGGTGTCTGAGCATCAGAATATGGATCAAAGGCATGCCTTAGATCAAGATCAGA GCTCAATGCTTAAGGTAATCTGTAATCAGAGAGATCGATTCAGAATACGCTTGCGAGAGACAGAAGAGGAAATAAGGCAG TTGAAGGAGAAGATTCGGGTACTAATAGGGGAACTTGAAAAGACCAAAGCAGATAATGTCAAGCTATATGGGAAGATTCG TTATGTCCAAGATTACAATACGGCGAAAGTGGTCTCTAGGGGTTCTAAAAAGTATGCAGAAGATCTTGAAAGTGGTTTCA CGTCAGATGTTGAATCTAAATACAAGAAGATATACGAGGATGATATAAATCCTTTTGCTGCATTCTCAAAAAAGGAAAGG GATCAAAGATACAAGGAGTTGGGATTCAGGGACAGAATCACACTCAGCAGCGGACGTTTTCTTCTTGGTAACAAGTATGC CCGTACCTTTGCATTCTTTTATACCATCGGGCTGCATATGTTGGTCTTTACCTGTCTCTATCGAATGTCGGCTCTGAGTT ATCTTAGCCATGGCCCAGAGGAACCTCTGATCGGAGCGAGGAAGGTTGATCTTCCGCGTGGACCTTAG
Protein sequence (LotjaGi4g1v0350600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELESENRKMKVELEEFRTEATHLKNQQATIRRLEERSRQLELQMEEKVKEIVEIKQRNLAEENQKTLEILKEREQLLQ DQLQSAKESVSTMQKLHELAQNKLFELRAQSDEERAAKQAEVNLLMDEVERAQTMLLGLEREKGVLRSQLQTTNQDGEIK KSDNSDSTVALENSLIAKDRQISELNMELHNIETTLSNEREEHMKDVKKFTALLNEKEASIEAMRKELHARPTEKMVDDL RKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQK LIQKLEDDILKGYSSNSKDHKGFPDDWDLSEAGRSEVSEHQNMDQRHALDQDQSSMLKVICNQRDRFRIRLRETEEEIRQ LKEKIRVLIGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKKYAEDLESGFTSDVESKYKKIYEDDINPFAAFSKKER DQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHMLVFTCLYRMSALSYLSHGPEEPLIGARKVDLPRGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 89 | 89 | - | – | |
| Phobius | 1 | 505 | 505 | - | – | |
| PANTHER | 2 | 533 | 532 | 3.0E-151 | – | |
| PANTHER | 2 | 533 | 532 | 3.0E-151 | – | |
| Coils | 115 | 142 | 28 | - | – | |
| Coils | 182 | 202 | 21 | - | – | |
| Coils | 207 | 227 | 21 | - | – | |
| Coils | 287 | 328 | 42 | - | – | |
| Pfam | 304 | 531 | 228 | 4.0E-61 | ||
| Coils | 377 | 418 | 42 | - | – | |
| Phobius | 506 | 527 | 22 | - | – | |
| TMHMM | 510 | 527 | 18 | - | – | |
| Phobius | 528 | 555 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intra-Golgi vesicle-mediated transport | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). | ||
| Cellular component | Integral component of Golgi membrane | The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0350600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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