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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0352100 |
| Transcript ID | LotjaGi4g1v0352100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT5G19080.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3; TrEMBL-Plants: tr|A0A0L9TTV9|A0A0L9TTV9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0352100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73055471..73059590) extracted from Lotus japonicus Gifu genome v1.2.
CGTTTATGTAATAAAACCATCTTGTACGCGGTGGAATTGTCCTAGTCTCCTAGACAAGAAAAGAAGAAGAAAGGGAAAAG TAAGTATTAAAAATTTGCCAATTTGTTCAGAAAAAGGAACAAGTCAATGTCTTCCATTCGCATTTTCTAAGAATCAACGG ATCTAGAACCTGACTTGAAGTTTCTTCTTCTTCTTCTTCTCAATTTGGCAACTGAGATTGAACCAGAAGACGAAGAAGAT GGGTGTTTCATGGAGCAACAACAACAGCAACAGAAGAAGGAACAACTACCCTCACGCACCACCACATCTCCCACCTCCTT ACTACTACTCTCACCACCCCCACCATCCACAACCGGCACTGCCGCCACCACCGCCGCAAGGCTACTACTACACCTCAACT AACCCTTCCGCCGCTAACTACGTGGCTCCTCCGCAGTTTTACTCAAATGGGTATGCTGCCAATTCCATGCCGGCGCGGTT CCACAACCAGCAGACTCCGTTTTTCGTGAATCCGGGTCAGGGTCAGGGTCAACCCGGTGCTGTTCCTCCTCCCTATGTTG ACCATCAAACTGCTAAGAAGATCAGGAATGATGTGAACTTGCATAAACACACTCTGCGCCTTGATTTTGATCCTAACAAC CCTGATCACCACTTGATTTCCTTCGTTTTTGATGCTCTTTATGATGGCAGGTTGGTCAATGCTAACCTCAATTCTTGTGT TCAATTTATTTTTTGTTAGATCTGTTAAGCATTAATTGATTCTAACTGTGATTGTTGTAAGAGTCTAGTCTTTTGCACTC AGAATAATATGCACTTACTGCACTAGCTTGTAGCCTTGTAGCTTGTTTCAATTGGTGGTGTCACACATTCCTAAGCACAT TGACCCTGTAGGCTGTAGCTTCTCAGAAGTCATTATAGAATTTCTCACCTTAGACTCTTACAGTGCTATTAATTGAGCAT GCTGATTTGGTTGGTGTTTTATCTTGATGAAGCTGCTAATGTGAATTGAGTAGAAATTTTCTGCATGCTGTAGTAGTAGA GTTGCCTCAGGATATGATATGACCCTCTGTGGTGATTATTATTGTTTGATTAAACTATAAACATGTAAAATGCAATTTTT GGGGACACATTAATCAATAAACCATCATATTTTTCATTGCTGGTGTCTAAAGTTTTTAACTTGCGTTTGCACCTTCATGT GTTGGAAGAAGCCAAATCTGCAATGCTTCCTATTGTAATGGTTTATGCTCTTGAATTTAATTTTTCTGTATGCTCTGATT ATGAGCTGTTTTTTTTTAAGTATTGAAACCAATCTAACAAGTTCGCGTGCCAATGGAAGGGCCATTTGAAACGAAAATCT ATTTGCAATAACTTTTTTTGGTTGATTGTCTTATCTAACGAATATTTTATTTTTTTGGTTGATTGTCTTAGATAAGCTTG CAGGCTCTTCTGCTTATCTAACGAATATTGAATGTATATAATTCAGTATTTTTTGCTCTTAATATTATTCTCCTTTCTTT TGTAATGGGCAGCATCACAATCTACTACTTTGCCAAAGAAGAAGAAAAATGCAGGTTTACTCCACTATTTCCTGAAGCAT TTGAGCCAATCACTTTCCCATTTCAGAAAGGAGCTGGCCTGAAGTTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGT TTCTTTGAGTTGGATGATCTCTCAAAGCCCTCACCAGGAGAAGATGTATTTCCCCTCGTGATATGTGCTGAAACAACTTC AACAACTCCCTTGGAAGATGAAACTCCTGGTATTCCCATTCTAAATGCATCTCCTCACATGCAAATAACTCAAGCTGTCT TAGAGAAAAGCAGTGGTAGTGGTCCATTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAG CTGAGAGAGTTATACGGAATAGGAAGCTCAACAGCAGCGGATTTTGATGATAATGATCCTCAGAAGGAATGTGTAATATG CATGACTGAACCCAAGGACACTGCTGTCTTACCTTGCCGACACATGGTATGATTTCCTTCCAAACGTACTTATTTTAGGA GCTGATGCTGTTTTTCAAGGAAAAAGTATTTCTTATGGTCTTATTATAATGCATTGATGATGGTCCATGCACACAAACTT GCCATCATTCGGTATCTGTAAGGGTTTGCTTATAGAAAATCAAGGTTGGTTTTAATACTTCTAAAAGACTAAAATGTTTT GCTTGGTGATCCTTATATTGCCCAATTTTTCCTTTTTTCTCCTAACATTAAATGTTTATGCCAACATAATTGGTAAGTAA GGACAAGTCACTTCTCCTTAGAAGTTTGTCTGTTTGATATCATTGCCAATGTGAGGGCCGTATTGGTTGGCGATCTGTAA GCAACCTATGGTTCTGGAGGCATGCCCTAGCCTGTGGTGGTGATGAACCCACACAAACTTTTATTTACAAAAAAATTTCT TTATATTGTGATATGGTACTCATACATAAAATAAATTGTTGCAAATTATTACCTGATCATTCATGTATTGTTTGCTGTCT CTCTGGAGAAGTCTTAAACACAATGCATGGATCAGTACTATGTTTATTATCAGATTACATTTGTTGTTTCTATTTTCCAG TGTATGTGCAGTGACTGTGCGAAAGAATTACGGTTACAATCAAATAAATGCCCTATATGCCGTCAGCCTATTGAAGAACT TATAGAGATCAAGATAAACAATGGCGACCAATGACATCTTTTCACGTGATGCGAAGCTGAAGTGCATGGTATTTTGCCCC CCATTTTGTAAATTGCAGTCAATAACCTGTTTATAGTTCACATGTAATGTGATTGAAAGAAAATTAGATAATATGATGTC CTCCTTTACTCTCACGTCATCTATATTGTACAGGTGATTATCTTCCTTTGTGTTTGTCTGCGAGTAATGTTTAAGGGGAT CCTTTGTAGACATGGTTTGGTTGCAGGAAAACCTCCATTGCATATTTTGAGGTTGAAGGTTCCTCTGATGAATTATGTTT GAAAATTTTATAAGGTTTAATTCAATTATATATAAAGCTAGTGTTCAATATTCTTGCTCTTCTTTTATGTTCTTCATATA TCGCAGGGTTATTAATTTAAAACTTGTTTGTCTCATGCCTTTGCTAAAGAAGTTGGTTTATCAATGAGTGTGACATAGGT TGTATGAAGAAAATAAATAGATTTTAGGTGTTGGACAATTTTTTCTTCTTCACCAAGAAGAAGAAAGAGGGTAAAACTAA TATTACCATACAAGGTAGCATTTATGTATGTAGGTAGAAAATCAGAATCTTGGAGGTTTGGATAGATTATAAGACTATAA CTCTTGAACCAATGAATATGTTAAAGCAATACCAATGTATCAAGTCTTGTTTTTCTGTATTTTATTTGTACTGGGTTTTC TATATTGGCTTTCACAAATCTGTGGTTTGCAACTGCTTAGAGTGTGTTTGGTTTCTAGTGTAAAGCACATTCAAATGACA TATTGGCTTTCTTGGATTGAGAAAAAACACATTCACGTCCAATTCGATGGATAACCGAACACACTCTTAAGGTGTAGCAA ATATCTATTCCTCAAAATTGTTCCAACTTGCACAGTTTCACCTGCATCTGAGTATTCAAACATTCCCTGCTGTATTTGGA ATTCTGTTCCTGTAGTATTACATTGTTTTATATTCAAGTTGCACATGCTTATATTTCACAGTTATGCCAAAAACTGACAA CATTGGAGTCAAATCTAGAGTTTTTCTTTTTCCAGAATGAAACTGGACTCTTAATAGTTAAAAATTGCATCACATGTACC TAGATATCTTTTAGGTTATTATAATTCATTTATTTTAAGTGCTTTTGTTTTGGGTCAACAAATTCATTTACCTGCTAAAC CAGCAAACAAGGGAATAAGTTAGAAGGAAGATTTTAAACAATAATACCTTTGGATTTTATAATTCTTACGCATGACATTA AGATTCAGCTTAGAATGATAACAATTAACAAGTTTAGATTTGAGCTTTTGAAGAAACTTAAGGTTGTGAGTATTATTATA TTCCATGCCCATATGGCCTCTCTTGCAATTCACTTCTCAA
CDS sequence (LotjaGi4g1v0352100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTTTCATGGAGCAACAACAACAGCAACAGAAGAAGGAACAACTACCCTCACGCACCACCACATCTCCCACCTCC TTACTACTACTCTCACCACCCCCACCATCCACAACCGGCACTGCCGCCACCACCGCCGCAAGGCTACTACTACACCTCAA CTAACCCTTCCGCCGCTAACTACGTGGCTCCTCCGCAGTTTTACTCAAATGGGTATGCTGCCAATTCCATGCCGGCGCGG TTCCACAACCAGCAGACTCCGTTTTTCGTGAATCCGGGTCAGGGTCAGGGTCAACCCGGTGCTGTTCCTCCTCCCTATGT TGACCATCAAACTGCTAAGAAGATCAGGAATGATGTGAACTTGCATAAACACACTCTGCGCCTTGATTTTGATCCTAACA ACCCTGATCACCACTTGATTTCCTTCGTTTTTGATGCTCTTTATGATGGCAGCATCACAATCTACTACTTTGCCAAAGAA GAAGAAAAATGCAGGTTTACTCCACTATTTCCTGAAGCATTTGAGCCAATCACTTTCCCATTTCAGAAAGGAGCTGGCCT GAAGTTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGTTTCTTTGAGTTGGATGATCTCTCAAAGCCCTCACCAGGAG AAGATGTATTTCCCCTCGTGATATGTGCTGAAACAACTTCAACAACTCCCTTGGAAGATGAAACTCCTGGTATTCCCATT CTAAATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAGTGGTAGTGGTCCATTCCAGGTAAAAGT AGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTGAGAGAGTTATACGGAATAGGAAGCTCAACAGCAGCGG ATTTTGATGATAATGATCCTCAGAAGGAATGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCTTGCCGA CACATGTGTATGTGCAGTGACTGTGCGAAAGAATTACGGTTACAATCAAATAAATGCCCTATATGCCGTCAGCCTATTGA AGAACTTATAGAGATCAAGATAAACAATGGCGACCAATGA
Protein sequence (LotjaGi4g1v0352100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSWSNNNSNRRRNNYPHAPPHLPPPYYYSHHPHHPQPALPPPPPQGYYYTSTNPSAANYVAPPQFYSNGYAANSMPAR FHNQQTPFFVNPGQGQGQPGAVPPPYVDHQTAKKIRNDVNLHKHTLRLDFDPNNPDHHLISFVFDALYDGSITIYYFAKE EEKCRFTPLFPEAFEPITFPFQKGAGLKFCQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETTSTTPLEDETPGIPI LNASPHMQITQAVLEKSSGSGPFQVKVVRQILWIDDVRYELRELYGIGSSTAADFDDNDPQKECVICMTEPKDTAVLPCR HMCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNGDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| PANTHER | 1 | 359 | 359 | 1.2E-178 | – | |
| PANTHER | 1 | 359 | 359 | 1.2E-178 | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 19 | 50 | 32 | - | – | |
| Gene3D | 289 | 357 | 69 | 3.2E-18 | ||
| Pfam | 301 | 348 | 48 | 4.4E-17 | – | |
| CDD | 303 | 343 | 41 | 8.69574E-28 | – | |
| SUPERFAMILY | 303 | 349 | 47 | 1.84E-13 | – | |
| SMART | 304 | 342 | 39 | 2.4E-4 | ||
| ProSiteProfiles | 304 | 343 | 40 | 11.589 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0352100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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