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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0352700 |
| Transcript ID | LotjaGi4g1v0352700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein trichome birefringence; TAIR: AT3G06080.2 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9LDG2|TBL10_ARATH Protein trichome birefringence-like 10; TrEMBL-Plants: tr|I1KNA1|I1KNA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0352700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73129971..73133733) extracted from Lotus japonicus Gifu genome v1.2.
TCCTGTCTCTTTAATTAGTTGGGCTTTTGTGACTGAAATTTGTTTTGGGCTTGGTTTTTTGGCCTGCTATACAAATGTTG ACCACGTGTCATCTAACCGTTACCCCATTTTCCCCCAGTTTCCATAGTGTACTCATTGGTTTGTTTTCTGCAGCAAACAA AATCTTCATTGCTTGCTTTCAAATCTTCACTCTACACAAACAAGAAAACAATTGAAAATCGTTGAATGAATGAGTACTCT TTGCTTCCTCTTTCCTCCATTGATTGATGATGGTATTTACTAAACTCACCTACCAAGCAAAGACAAGCTTCAATTTGATT GTTTCTGAATTCTGATGATTTCTGTGGGGCATGAATGAATGTCATGTTACTTGCATGCCACTCTTCTAAATCCTTAAAAC TTCCCGTCATTTTCCCAGTGTGTCACTATCTGTGACCGTTATAGCGATACCCACTTGAATTTTTTCAAATGTCTGAAGAA GTTGAAGCCATGATGCCCATGACAGTTTTTGAAGGTTTCAGAAGAGTTAAGCGCTTTCGGTTGTTCGAACCGTCTCTGGG TGTTCTTGGGTTCGTTGTTGTTACCGCCATTGTTGGTTGCTGCTTCTTCTATTTGGGCAACAGAGACGTTGCTGCTAGAT TCGGGTTCTTGGACCAACCTCAGAGTTTTCCTTGGTTGCGGTTGAAGGAACAAAGCAGAGTTGAGTTTCTTGGAGAAAAT GGTGTTGTTGGTGGTGGTGGGTGTGACTTGTTTGATGGGGAATGGGTTTGGGATGAGAGCTACCCCTTGTATCAGTCAAA AGATTGCATGTTTTTGGATGAAGGGTTTCGGTGTTCTGAGAATGGACGACGTGATTTGTTTTACACCCAATGGAGATGGC AACCTAAAGATTGCAACATGCCCAGGTTTGTGTTTATGCTTGTTGAGTTGTTGATCACTTGATTGTGTTCTCCACTGCTT TCAATTTCATTTTAGGACTATCAAGTTGATTATGTTTTTCATTGCTATCAGCATTAATAAGGATAGAGATGTTCAATTCA AATTATATGGCTTCCTGCAAAAAGTGTTTGTGCTTAATTTTGAATATTGGGAAAATGTGATTTTGGATGTCTTGAACTAT GTTATCAGGCATGTTGGCCAGGGTTGTTAATGGCGGATAGCGTAGCGTAGCGGCAAGCCCAAAAAACTATTTCGAGCACT ATTGCGGCGCTATAGTGGCAAATAGCGGACAATAGCAGCAAATAGGGTGAATAGTGGAGTAGCGGTTAACCCCCAGGGTG CTACGCTATAGCGCTATTGCGCCACTATGGCGCGCTATTAACAAGCCTGATGTTGGCCCATTATAATATTGCTATGTAGG TTTACAAACATTGCTACTTTGCAACTAACATTGCTAGTGCCTAGTGTTACTCAATGCTAAAATCAAAGACTAATTTTGTC CCAGTTGTGTATGGATGAAATCAATGGTTATGTATTCAATTGTTTCATCTATTCGATTTTTTAATATTGTTGTCTCTGAT CGAATGTAAAGGTAAATGAAGTAAGCTTACACCCTTGGTTTATCACTAATAAAAACAGGTTCAATGCAACAAAGATGTTG GAAAGACTGAGAAACAAGCGCGTAGTGTTTGCTGGGGACTCAATAGGGAGAAACCAATGGGAATCGCTCTTATGCATGCT CTCTTCTGGAGTTTCTAACAAGGAATCAATCTATGAAGTGAATGGAAACCCAATCACAAAGCACAAGGGGTTCTTGGTTT TCAAATTCAGGGACTTTAACTGCACAGTGGAGTACTATAGAGCTCCATTTCTTGTATTGCAGAGTCGGCCTCCAACAGGA GTTTCTGGAAAGATTAGAACAACTCTAAAAGTGGATAAAATGGATTGGAATTCTTTGAAGTGGAGCAATGCAGATATCCT GATTCTTAACACAGGGCACTGGTGGAATTATGAGAAAACCATAAGAGGGTATTTCAATCTTCCCTAGACTTTCATTGCTT AAGCATTTACTTTCACCATGTTAGTTTTAAATTAGAAAACGTTTTCATAGCGAATAATGTTCAAACAGGATGATATTTTA GAATTGAGTTCCATCAGGTGTTAGCTTTCCCAACTGTTCACTATAGATGAAATGCATTATTGTTCACCTCTTGATGGATT TTCTATTATATTCTATGATCTTTTGCTGTTAGCTAGACAGCTGCAGATGGTGACAATGGAATTATAATTATGATAATGAT TACTTGATCATGAAAATGGTAGTTGAGAGAATGGTCATAAGAGTATCATCTCTATATTGTTTTTCTTCCTCTTGTCTCCT TTTTTATTTGTCCTTCCTTTATTCTAGATTAATATTTATTTTTGTTGATGATATTGTTTTTCAATTCTCCATAATCTGGT TTTTGATCGAGTACCATGGTGTAGTGTGATCCATATAGCCGACCTCACTGAGTGGGATAAAGCTTTTGTTGTTTTTGTTT TTCAAGATTTGAGCTACCTGACCCTTTATGCTGAATTAAAAGTTCTGTTGATTGGATTATATAATAAGAGAAATCATGGT ACTAGGACGACCTTGAAAGATTAATTGTGTGCCTTCTTAATTCATTCCTTGAGCTTTAATCATTCCACATTAATGGTCGG CATCACTGTGAACTGTGAACCTGTGACATTTATCCATATTTGTTCAGGGGTTGTTATTTCCAAGAAGGCACGGAAGTTAA GTTGAAATTGCATGTAGAAGATGCATACAAGAGGTCCATGGAGACAGTGTTGAACTGGATGCAAAGTTCAGTAAATCCTA GCAAGACACAGGTTTTCTTTCGCACTTTAGCACCAGTTCACTTCAGGTTTGTTTCACAATTCAATAACGAATTCCCTGCT CTTTAACTAATTTCTCTCAGTATCTAGAAACTAATTGCTCTGATATTTAGCAGAGGCGGGGATTGGAGAAATGGTGGAAA TTGTCACTCGGAAACACTACCAGATCTCGGTTCTTCATTGGTTCCTAATGACAACTGGTCGCGATTCAAAGCAGCCAACG CGGTGCTATCATCACATACAAATGCTTCTGAAATTATGAAAATCAAGGTATTGAACATAACCCACATGACTGCTCAGAGA AAAGATGGACATTCATCTATCTATTATCTCGGTCGTGTTGCGGGTCCTGCTCCTCTCCATCGCCAAGATTGCAGTCATTG GTGTTTGCCCGGCGTACCTGATACATGGAATGAGCTGCTTTATGCTATGCTTCTTAAACATGAAGTTGATCAGAGATGGA ACTTGTTCCAGTCATGAGAGACTGAGAATTATGTTAATTGTGCTGCTCGGAAGAATCATGGAGCTTTTCTGTGCAGGAAT ATACCTATTCTTTCATAGAATAGAAGTGTTACAGAGAACAAGATGAGATATTTTACAGCAGAGATCTGCAGTGAAGGACT GAGGTATCAGATTTTTTTGCTGCAAACACCAATGAGAATTATTTGCCTTTAGAAGGAGCTCAACATTTTGGAGCCATTGA CATCAGTTTTGAAATACAATGCTGGTAGCTTCAAGAAACCAATAGTTTCTCACTTTTGGTTATCTTGTGATTAGATGAGG GAAAGAACAAACTGTAATTTATCAATTTTTTGTATGCTATTAGGACACAGTTTTGGTTACAATTGAAAAGATAATAGTAA AGGAAAAATGCTTCTTCAAACTCATTATGCTAGCTATTACTCTTTGGGAGGGAGTATGTTTTAGGGTTAATTGTCATTTT AGT
CDS sequence (LotjaGi4g1v0352700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAAGAAGTTGAAGCCATGATGCCCATGACAGTTTTTGAAGGTTTCAGAAGAGTTAAGCGCTTTCGGTTGTTCGA ACCGTCTCTGGGTGTTCTTGGGTTCGTTGTTGTTACCGCCATTGTTGGTTGCTGCTTCTTCTATTTGGGCAACAGAGACG TTGCTGCTAGATTCGGGTTCTTGGACCAACCTCAGAGTTTTCCTTGGTTGCGGTTGAAGGAACAAAGCAGAGTTGAGTTT CTTGGAGAAAATGGTGTTGTTGGTGGTGGTGGGTGTGACTTGTTTGATGGGGAATGGGTTTGGGATGAGAGCTACCCCTT GTATCAGTCAAAAGATTGCATGTTTTTGGATGAAGGGTTTCGGTGTTCTGAGAATGGACGACGTGATTTGTTTTACACCC AATGGAGATGGCAACCTAAAGATTGCAACATGCCCAGGTTCAATGCAACAAAGATGTTGGAAAGACTGAGAAACAAGCGC GTAGTGTTTGCTGGGGACTCAATAGGGAGAAACCAATGGGAATCGCTCTTATGCATGCTCTCTTCTGGAGTTTCTAACAA GGAATCAATCTATGAAGTGAATGGAAACCCAATCACAAAGCACAAGGGGTTCTTGGTTTTCAAATTCAGGGACTTTAACT GCACAGTGGAGTACTATAGAGCTCCATTTCTTGTATTGCAGAGTCGGCCTCCAACAGGAGTTTCTGGAAAGATTAGAACA ACTCTAAAAGTGGATAAAATGGATTGGAATTCTTTGAAGTGGAGCAATGCAGATATCCTGATTCTTAACACAGGGCACTG GTGGAATTATGAGAAAACCATAAGAGGGGGTTGTTATTTCCAAGAAGGCACGGAAGTTAAGTTGAAATTGCATGTAGAAG ATGCATACAAGAGGTCCATGGAGACAGTGTTGAACTGGATGCAAAGTTCAGTAAATCCTAGCAAGACACAGGTTTTCTTT CGCACTTTAGCACCAGTTCACTTCAGAGGCGGGGATTGGAGAAATGGTGGAAATTGTCACTCGGAAACACTACCAGATCT CGGTTCTTCATTGGTTCCTAATGACAACTGGTCGCGATTCAAAGCAGCCAACGCGGTGCTATCATCACATACAAATGCTT CTGAAATTATGAAAATCAAGGTATTGAACATAACCCACATGACTGCTCAGAGAAAAGATGGACATTCATCTATCTATTAT CTCGGTCGTGTTGCGGGTCCTGCTCCTCTCCATCGCCAAGATTGCAGTCATTGGTGTTTGCCCGGCGTACCTGATACATG GAATGAGCTGCTTTATGCTATGCTTCTTAAACATGAAGTTGATCAGAGATGGAACTTGTTCCAGTCATGA
Protein sequence (LotjaGi4g1v0352700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEEVEAMMPMTVFEGFRRVKRFRLFEPSLGVLGFVVVTAIVGCCFFYLGNRDVAARFGFLDQPQSFPWLRLKEQSRVEF LGENGVVGGGGCDLFDGEWVWDESYPLYQSKDCMFLDEGFRCSENGRRDLFYTQWRWQPKDCNMPRFNATKMLERLRNKR VVFAGDSIGRNQWESLLCMLSSGVSNKESIYEVNGNPITKHKGFLVFKFRDFNCTVEYYRAPFLVLQSRPPTGVSGKIRT TLKVDKMDWNSLKWSNADILILNTGHWWNYEKTIRGGCYFQEGTEVKLKLHVEDAYKRSMETVLNWMQSSVNPSKTQVFF RTLAPVHFRGGDWRNGGNCHSETLPDLGSSLVPNDNWSRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSSIYY LGRVAGPAPLHRQDCSHWCLPGVPDTWNELLYAMLLKHEVDQRWNLFQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 12 | 441 | 430 | 1.1E-238 | – | |
| PANTHER | 12 | 441 | 430 | 1.1E-238 | ||
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 28 | 49 | 22 | - | – | |
| Phobius | 50 | 449 | 400 | - | – | |
| Pfam | 91 | 143 | 53 | 5.7E-22 | ||
| Pfam | 144 | 434 | 291 | 2.2E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0352700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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