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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0353900 |
| Transcript ID | LotjaGi4g1v0353900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT2G01970.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q9ZPS7|TMN3_ARATH Transmembrane 9 superfamily member 3; TrEMBL-Plants: tr|I1K3B1|I1K3B1_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0353900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73237326..73242965) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGAAGCAAGTGGTCAACGTTGCTCTTCTTCGTTCTCGCAATCCTGCACGGAACTCACGTGAGATCCGATGCCTC CGATCACCGTTACAAGGACGGTGACCTCGTTCCTCTCTACGCCAACAAAGTCGGTCCATTCCACAACCCCAGGTTCGATC TCTCTCCTCTTCCATTCCAATCGCTTTGTCTTGCACAGATCCACATGCATTCATTTCATCACTCTCCCCCCTCACTTTCT CCGTTGCCCAACACTTGGTTTCCACGTTTTCCACCGTTTGAGATGATGGGTCGTCGTCAAAATCTGATCTTGTGTTGAAA TTCTCCTTCCATGATGGTGGTGGTGGTGTTTCGTTTCTGTGTGTTTGTTTTATGAGATGAGAAAGTGTTTATTAAATTTT GTTGTCGTTTTCTGATTTCTTGTTCATTTAATTTGATTGATTTCAGTGAAACGTATCGATACCTAGACCTGCCATTCTGT GTAACAGGTAACTATCTGAATTTGTGCTTTAGATTTTGGTATTTATTACTTCCTTTAAAGCTCATTATTTGTGTGATTGT GTCGGTGGTTTCTCTTTAGTTTTTCTAATTATGGATATCAAAGTGCTATATAACTTGCAAAATTTCATTTCATTTTATAC TTATTTGTTTGCTGTTTCAGTTTTAGCGGGTTAGAATGCTCCATTGCTTTTTCCTGTTGAGATAAACATGTTGCTATGAA TGTTTAATTAATTTTTCCAATTTTCCATACTTTGATGGGTTCTTAATTCATGTCATTCTAAAATGAGTACACCCAAATGG CAGGTAAAGAGAGAGAGAAAACGGAAGCACTTGGCGAGGTGTTGAATGGAGATCGCCTTGTTAGTGCTCCGTATGAGCTT GATTTTAGAAAGGAGAAAGACTCTAATGTTGTGTGCAAGAAGAAGCTCACAAAGGCGCAAGTTGCTCAGTTCCGAGAAGC AGTTAAGAAGGACTATTATTTCCAAATGTATTATGATGACTTGCCAATCTGGGGATTTATTGGAACAGTTGACAAAGAAG GAAAGACCGACCCTAGCGAGTACAAGTATTTTCTTTACAAGCACATTCAGTTTGATGTTCTGTACAACAAAGATCGTGTG ATTGAGATCAGTGCCCGGATGGATCCTCATTCCGTTGTGGACCTGACTGAGGACAAGGAAGTTGATGTTGAGTTTATGTA TACTGTAAAGTGGAAGGAGACAGATACTTCTTTTGAGAAGAGAATGGATAAATACTCGCAGTCTTCTTCTCTGCCACATC ACTTGGAGATTCATTGGTTCTCAATCATAAACTCATGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTC ATGCGTGTCTTGAAGAATGACTTTATGAAGTATGACTTACTTGCTCATCTATCACCAGATTGTCATCTTATTATTACCCA TGGCATTGTTTTATTTAATGTTTTCCCCCTTGTTTCTTGTTGTCTGCTCCAGATATGCTCAAGATGAGGAAGCTGCTGAT GATCAGGAGGAGACGGGATGGAAGTACATTCATGGTGATGTTTTCCGGTTTCCTAAGTACAAGTCCTTGTTTGCAGCAGC CCTTGGTTCTGGCTCTCAGTTATTCACTCTGTAAGAATCTTTTTGATGTCTCTTCTCCCCTTCTGTGCTGAAGCGTTTTT CCTCTCTACATTATAAACTTAAGTGTGTGTCATTTTCTATTCCTTCGTGCTTGTGCAGTACAATCTTCATTTTTATGCTT GCACTGGTTGGTGTATTTTATCCCTATAACCGAGGAGCTTTGTTTACTGCACTGGTGGTCATTTATGCTCTTACATCTGG CATTGCTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGATCTAACTGGGTATGTATAGACTGCTTGTGCTTGT GGTTGCACAGCGGTTTGTATTTATTGATTCAATTGTTGTGAAGTTAAGTTATATGATTTATACGTCTATTTTCTTGTTTG ACAGGTTAGAAACTTATTGCTGACAGGGTGCCTCTTTTGTGGCCCTCTTTTCCTCATGTTCTGCTTCCTTAACACAGTTG CAATTGCTTATAGTGCAACCGCTGCTCTTCCATTTGGCACAATTTTGGTGATAGTCCTAATATGGACATTGGTTACGTCG CCATTACTTGTGTTGGGTGGTATTGCAGGTAAAAATAGCAAAACTGAGTTCCAAGCTCCTGTCCGCACTACAAAGTATCC CCGAGAGATTCCACCTCTGCCTTGGTACAGAAGTACCATTCCACAGATGGCAATGGCAGGGTTTCTCCCTTTCAGTGCCA TATACATAGAGCTGTACTACATTTTTGCTAGTGTATGGGGCCACAGAATTTATACTATCTACAGCATACTCTTCATCGTC TTTATTATTCTGTTGATTGTCACCGCGTTCATCACTGTGGCTCTGACATATTTCCAACTTGCTGCTGAAGATCATGAATG GTGGTGGAGGTAACTTATCTTATTGCTGCCTTCTACTGTAGTTTTTTAGCGTTTTTTACTGCCTATATTATTGTCTAAGC TTATATCAGCAATTGAATTAGTTTTCATATTGTCTGTTCTAGAGTTAAAAGAAATTGTCAATGGTTAGGAAAAGAGAGAA GAAGATTAGAATAGAAGGTGCAAGCTTATTTGTATTTTTACTACTGATATAGTAAACAAGAAATACCTCTTCTATCTTCA GTTTCTAACTATGGAATTTGAAAAGAATTCTTTACTATAGTGGCATTCGCATAATTTTTGCATGAAATGTTAAAAAATTT AAGGTAAGAAAATGGTACTAAATCATAATATATAGTATCAGATCATTGTTCATTTTACTTTCTCCATTCTTCTCTTTTTT CTCATCCTGTTAATGTTACTCTCTTAACATGACAAACACATGTATGTTAACTGAACCTAAGTATAGAATCAACTTTATGC AATTTATGTTTTATACTAAGTTGCAGTGTTGGTAAATGCCAGCCATTGTGGTATTTTAAGGCCCTGGCATAGTGGCTTTC ACCTGGCGGGCCTCGGTGGACACTATTCCATGGCGGGCATGGCGTCTAGTGTCCATGATGGAAAAAACACCAAAATCCAA TTTTTTTTTGTTGAAAAAAGACCAATAACATAAACCCACCCATTTAAACCCTAAACCCCATAATTCAATTCTCCTTTTTC TGTTATGTACTTCTCTGTTTTTAAGTCTCTACTCCCTTCTCTTCCTCCTATTCTATTCTTGATATGTGTGTATATATATA TCTGATTTGATATTTCGTGACTTCCTAAGTTTCTCTAGCTACAATTGACTTCGCTTTTTGGTACATTTTTTCCACAGATA TTGGTACTGTAATTTTCTGTAAAATGTATTTGTATTTTGAATCATGTATCTTAACTATGTCAACCTAAACCATTAATTTT CTCTTCTACTTTTGAGCACACTTGACAGACTCAGGGGCATTGAGCTGCGATTGATTCAGGGTAGAGTAGGTGGAAAGTAC AAATCCAGTGTTTATTATATCTAAAATGATTTCTTATTTGACCCTTTTTCGTATTCCATCTACTCAAACTAACAGACCCT TGAAACAGGGCATCATAGTAAACTCGAATGGTTGAGATTGCTTGAGAGGAACCCTCTCAGCACTAAAATTTATAATAGTT AAATAAAATACCAGTCACAATTTGAAAATGGTACACCCTTAGTCCAAGTCTATAATAGGAGGAAGAAACAACATGGAACA GAATGAAATGGGCCAAAGGAACAGTTTGGGCCACTGTAGAGAGGATAAATAAGGAGGGAATTGCAGGAGCTCTTGATTTT AGGGATGATCGGCACTGTAGATGAATGGACATGGAAAGGAAGGGTCAAAGAAAGAGGCCTTGAAATCATTAGTAGTTAAG CCAGCTGGTACAAGCTGATTGGAATGGAAATTACTTGTGTATCAATGTAGGGTAAGTTGGAGGAAGGGGAGAGCGAAGAG GCAGACAATTCTGTGGTGAAGTGAGAAGGGTCGGAGTTTCCTTCGTGTTTGGAACCACTGGATAGTTATTTTTGTTGGAT CTGGATCCTCTAAAGTGAAAATCTCACTTTATATGGTAAAGTAAGTCACATTTACCGTTGATTCATTGACTTTTCAAAGT AGGTTATCATTATTAATGGTCATGATGACTTACTCTACCCTCTAAAGTGCCTCTCACGTTTGAGGAGTCTAACCCATATT TGTTTCTAGTGTCTATTGGCACTAATGAATTGCCTCTGAATTTAAAAGTTCTATTAGAGTACAACTCAAATGCCTAAATC CCTAAAATTTAGGGATTGATATATCTCCTAACTAAAAATGCATTATACACCTAATTTATGGGGTAATATTAGATTAACTA TACAACAATATTAATGGTCTGCCTCAAGATGGTTACCTATATCAACAATATGCATCAAGCTTGTTACTTATGTGTTACCC TAGGACCCTGAATAGACTTAGAGAAGATGTCTACTAGTCGATCATTAGAATTCATAAAGGACGCGGTAGTTTCTCCTAAA AGTAAAAAGAGCTTTTTCTCAAACAAATAAAAAAACTGTGTCGGATGTAATGTGAGAAGTTACTTGTTTGTTGCAACTTT CATACCAGCTTATTTCGAAGAACAATAATTTTTGAACATTTGCTTCAACCATATTAGTTAACATGTGTAAAGAGCCATGG CTCAATACTCTGCTCCTGCACTAGATCTGACGACTACATTTTTTGTCTTGCTTTTCCATGAGATACAATTTCCTTTAATA ACATTATATCCTGAAGTTGATTATTGTTGGAAATAAACTGGTAGAAAGTGAGAAAATATGAGGAAATGAGAGAAAAGTTC AGAAAGAATCTTCTGAATTCATTCATTGAATAGTGTGTACTGCACTGCTATATATAGTTGCAGTGTGAGAGATCTAACAA TATGTAACAAATCTAACTGAAAGCTGTTGTCTCTACTTGAAACAAATAATGTCATCCACATGGCCTACAATTTCGGTGTA GTGATTAAAGATGTGTTTACTGAATACAATGTTATATGCTTCACTATGAACCACACCAAATTGCTATATAATTGTGTGAA TTGTGAAACCATCCAAACCATGCTCATGGACATTATCTCAATTCTCAAGCTACATAGGGACTCGTGGGATAAACAATTGA GTCTTGATTCTCCTTTAGCAACATCCCTGATTTATGAAATGTGGAATTGAAATGTTTTAGGATTTTAGCCTATATTGTGA TTGTTATTTTCTTTTCTATTCAATAACCAAAGATGTTCTGAATCTATTTAAAGTATATGCAACTTAAACTTTGTAGACAA TCCATTTGCCTTCGTTACTGGACGTTTTCTTCATGATATTGATGTCTGTTTGTGTTACAGGTCTTTCCTTTGTGGTGGAT CAACTGGCTTGTTCATCTATGGTTACTGCCTGTATTATTACTATGCACGATCAGACATGTCTGGTTTCATGCAAACCTCG TTCTTCTTCGGTTACATGGCCTGCATCTGCTATGGCTTCTTTCTCATGCTCGGTGCTGTAGGTTTCCGTGCCTCGCTGCT CTTTGTCCGCCACATATACAGGTCCATCAAGTGTGAGTAG
CDS sequence (LotjaGi4g1v0353900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTTGAAACGTATCGATACCTAGACCTGCCATTCTGTGTAACAGGTAAAGAGAGAGAGAAAACGGAAGCACTTGG CGAGGTGTTGAATGGAGATCGCCTTGTTAGTGCTCCGTATGAGCTTGATTTTAGAAAGGAGAAAGACTCTAATGTTGTGT GCAAGAAGAAGCTCACAAAGGCGCAAGTTGCTCAGTTCCGAGAAGCAGTTAAGAAGGACTATTATTTCCAAATGTATTAT GATGACTTGCCAATCTGGGGATTTATTGGAACAGTTGACAAAGAAGGAAAGACCGACCCTAGCGAGTACAAGTATTTTCT TTACAAGCACATTCAGTTTGATGTTCTGTACAACAAAGATCGTGTGATTGAGATCAGTGCCCGGATGGATCCTCATTCCG TTGTGGACCTGACTGAGGACAAGGAAGTTGATGTTGAGTTTATGTATACTGTAAAGTGGAAGGAGACAGATACTTCTTTT GAGAAGAGAATGGATAAATACTCGCAGTCTTCTTCTCTGCCACATCACTTGGAGATTCATTGGTTCTCAATCATAAACTC ATGTGTAACAGTTCTTCTTTTGACTGGTTTTCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGACTTTATGAAATATG CTCAAGATGAGGAAGCTGCTGATGATCAGGAGGAGACGGGATGGAAGTACATTCATGGTGATGTTTTCCGGTTTCCTAAG TACAAGTCCTTGTTTGCAGCAGCCCTTGGTTCTGGCTCTCAGTTATTCACTCTTACAATCTTCATTTTTATGCTTGCACT GGTTGGTGTATTTTATCCCTATAACCGAGGAGCTTTGTTTACTGCACTGGTGGTCATTTATGCTCTTACATCTGGCATTG CTGGCTACACTGCTACTTCCTTCTATATTCAACTTGAAGGATCTAACTGGGTTAGAAACTTATTGCTGACAGGGTGCCTC TTTTGTGGCCCTCTTTTCCTCATGTTCTGCTTCCTTAACACAGTTGCAATTGCTTATAGTGCAACCGCTGCTCTTCCATT TGGCACAATTTTGGTGATAGTCCTAATATGGACATTGGTTACGTCGCCATTACTTGTGTTGGGTGGTATTGCAGGTAAAA ATAGCAAAACTGAGTTCCAAGCTCCTGTCCGCACTACAAAGTATCCCCGAGAGATTCCACCTCTGCCTTGGTACAGAAGT ACCATTCCACAGATGGCAATGGCAGGGTTTCTCCCTTTCAGTGCCATATACATAGAGCTGTACTACATTTTTGCTAGTGT ATGGGGCCACAGAATTTATACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATTGTCACCGCGTTCATCA CTGTGGCTCTGACATATTTCCAACTTGCTGCTGAAGATCATGAATGGTGGTGGAGGTCTTTCCTTTGTGGTGGATCAACT GGCTTGTTCATCTATGGTTACTGCCTGTATTATTACTATGCACGATCAGACATGTCTGGTTTCATGCAAACCTCGTTCTT CTTCGGTTACATGGCCTGCATCTGCTATGGCTTCTTTCTCATGCTCGGTGCTGTAGGTTTCCGTGCCTCGCTGCTCTTTG TCCGCCACATATACAGGTCCATCAAGTGTGAGTAG
Protein sequence (LotjaGi4g1v0353900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVETYRYLDLPFCVTGKEREKTEALGEVLNGDRLVSAPYELDFRKEKDSNVVCKKKLTKAQVAQFREAVKKDYYFQMYY DDLPIWGFIGTVDKEGKTDPSEYKYFLYKHIQFDVLYNKDRVIEISARMDPHSVVDLTEDKEVDVEFMYTVKWKETDTSF EKRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPK YKSLFAAALGSGSQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGSNWVRNLLLTGCL FCGPLFLMFCFLNTVAIAYSATAALPFGTILVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRS TIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGST GLFIYGYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGAVGFRASLLFVRHIYRSIKCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 178 | 178 | - | – | |
| PANTHER | 4 | 544 | 541 | 0.0 | ||
| PANTHER | 4 | 544 | 541 | 0.0 | – | |
| Pfam | 6 | 501 | 496 | 3.3E-170 | ||
| SUPERFAMILY | 177 | 361 | 185 | 2.09E-6 | ||
| Phobius | 179 | 202 | 24 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| CDD | 196 | 361 | 166 | 5.86348E-4 | – | |
| Phobius | 203 | 243 | 41 | - | – | |
| Phobius | 244 | 272 | 29 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 273 | 277 | 5 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 278 | 302 | 25 | - | – | |
| Phobius | 303 | 313 | 11 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 314 | 339 | 26 | - | – | |
| Phobius | 340 | 344 | 5 | - | – | |
| Phobius | 345 | 367 | 23 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 368 | 404 | 37 | - | – | |
| TMHMM | 403 | 425 | 23 | - | – | |
| Phobius | 405 | 424 | 20 | - | – | |
| Phobius | 425 | 435 | 11 | - | – | |
| Phobius | 436 | 462 | 27 | - | – | |
| TMHMM | 438 | 460 | 23 | - | – | |
| Phobius | 463 | 473 | 11 | - | – | |
| TMHMM | 470 | 492 | 23 | - | – | |
| Phobius | 474 | 494 | 21 | - | – | |
| Phobius | 495 | 505 | 11 | - | – | |
| TMHMM | 505 | 527 | 23 | - | – | |
| Phobius | 506 | 534 | 29 | - | – | |
| Phobius | 535 | 544 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0353900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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