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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0354100 |
| Transcript ID | LotjaGi4g1v0354100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT2G01940.1 C2H2-like zinc finger protein; Swiss-Prot: sp|F4IPE3|IDD15_ARATH Protein SHOOT GRAVITROPISM 5; TrEMBL-Plants: tr|I3SCM2|I3SCM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0354100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73261239..73264605) extracted from Lotus japonicus Gifu genome v1.2.
GACTTGCCCCTCAACCTTACCTGCTCGAGGTGAGAGGTCAATGAAACAACAAAGCAAGAAAAGCAAAGAAAAAGCTAGTA GCTACCAAAAAGCCTTTAAGAAAGCTGATTACATAAAGCAACACCTTTTTCTCTCTCTTCCTCAGTTTTCATTTTCCCCC TCTCTCTATCTCTATCTCTTCCTTTGTTGTGCCATTATCATTTCTCATTTTCTTCCCATGAATAAAGCTGAAACCCACTA TCACACCTTCACCAGCTGTAGTACTAGTTGTGGAAATTAACTCATCCACAATACATATAGTCCTAAAAAGCCTCACAAAA ATCCCACCACCCATGTTAGACAATACTGCTTCTTCTTCTGGTGCACCATCTTCTTCTGATATTGCTGCTTTTGCATTATC AGAAAATGGAGTGCTTAACAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGGTAAGAGCTCCACAAAAAGTTTCCCCT TTTGAGAATCAAATTTCTTCCACCCTTCCCCCAAGTTCTTTTCTCACAAACAAAATTTGTATTTAAATATTTTAATTTTA ATCAAAAAATTTGGGGTTTACCACTTCCTACGGCCACAGGGATCAATCACTGTTGTCGGTCCTTAATCACAAACAAATTT TGTGGAGCTTTAATTTTTAATCAAAATTTGTGGGTTTACTGGTTCATGTGACCACCAGCCAGAACATTAGTCATGGCTGC CGGTGGTCACATGCGCGGAGAGAATTAGTTATTGTTGTCGGCCACGCGGTGAACGGTGAATATCTGGTCTCACACAAAAT TGTAACTTTTGTGTCTCTAAATTTCAGATCCAGATGCTGAGGTGGTGTCCCTCTCACCCAAGACCTTACTAGAATCAGAC AGGTATGTGTGTGAGATCTGCAACCAAGGCTTTCAGAGGGACCAGAATCTGCAAATGCACAGGAGAAGGCACAAGGTGCC ATGGAAACTCCTGAAAAGAGAAACCACACAAGGGCAGAAGAAAAGGGTGTTTGTGTGCCCTGAGCCAAGTTGTTTGCACC ATGACCCTTGCCATGCCCTTGGTGACCTTGTTGGAATCAAGAAACACTTCAGGAGGAAGCACAGCAATCACAAGCAGTGG GTTTGTGACAAATGTAACAAAGGGTATGCTGTGCAATCTGATTACAAGGCGCATGTCAAAACATGTGGTACCAGAGGGCA CTCGTGTGACTGTGGCCGTGTGTTTTCCAGGTTTGCTTTCCCTCTTTTCTTATCATGTTCATTATTCTTTCATCTTTCCA TTTTTTTTTCTCTTTCTTTCTTGGTGTCTGTGTGTTTGGTTTATGAGATTCAGTCCCTCACGCTGAGGAATTGATTTTGT TCTTAACGGAAACCAGATTATTAGTACTATTACTTTACTAGTTCTTAAATTATATTATTATATTAATGATTATTCTCCTG CTAGGTCAAACCCTAAAATTCTAGCTACAGTGATAGAAGAGAGAGGCACAAATTTAAAGATTTTGCATCTTCTTGATATT ATTATCACTATATAAATTTCCTATCTTGGGAATTCTAAAGCATTATGAGTTGAAAATTTCAAATCCACAAGCATTATGTT TGAATATTACATACTCCCTTATCCGCCTTATTCTGGCATTGTACAGTCTAGGACTAGGAGAGCCCATGATAGCTTTAAGT TTAAAGATTTACAGAAATGATATTTACTTGGTTCACTAAGAATAATGTTTCCTTAATATTTGAAACACATCTGCACCTAG TTAGATATGAGAAGAGATTAAAAGAAATAAATAATGATATGATAGATGATTAATCGATCAAAATTTATTCTGAAGAGTAT CAGTTCTATATAGGATTTGATTTTGATAGAAATTGAACTGAAGTCGTAATATATATTTATAAATGCATGATAACATTCCA TTTGTCCCTTATTATAAGGTCGTTTATTGTTTTACAATAAGGGGTTTTATAATAAAAAACGAGGAGCTGAGTATAATATA TGACCTCTTTTGATTAATCAGCTAAACTTGTGTCCTTTCAGGGTGGAGAGTTTCATAGAACATCAAGATACATGCAATAT GCGGCTGCCACGGCAAGAGTTACAAGCACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAATG AGGCCAATTTTAGCATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCACCACCAGCTGATCAGCCATCAACTTCAAAC ACACACAACTTAGAACTTCAGCTCTTATCACCTTCTTCAACAATCCCCAAAGAAAATAGAAATCCCAGGGAAAACCATAA TGAGACCCGTTTGAAGCTCTCAATAGGTTCATGTACTAATAATGATGGTCACATAGGGAATGAAGAATCAGAAAGGAATA ATAATAATAATGTTGTGGGTGATAATTCCATTTTCGAAGTGGCAAGGCTGAAAGAGTTTGCTGGTGAGGAACTCAAGTTG GCGATGGCGGAGAAGGCTTACGCGGAAGAGGCTAGGAGAGAAGCGAAGCGCCAAATTGAGATAGCTGAGGTTGAGTTTGA GAATGCTAAGAGGATAAGGAAACAAGCGCAAGCTGAGCTCGGAAAAGCTGAAGATTTGAGAAAGCAAGCAATGAAGAAGA TTAGCTCCACTGTTATGGAAATAACTTGTCAAGCTTGCAAGCAGCAGTTTCAGAACTCAACTGTTGCATCAGATCAAGAA ACTTCCATTGTGGTGAGTTACGTGTCCTCAGCCAACACAGAAGGCGAAGCTGCAGAAGAATGATATAGTGTGTGTTTGGA TATCAGTTTAGTGTAATTGGATGGACTATTAATTTATCTCGAGTTCTGCTTTCATTTTATCTCGAAGTCAGTGCTAACGA GCATCCAAACCTATGCATTTATAGTATACTCCATTATGCTGTTCTGCAGAAAAAGAAAGAAGAAAAGCTAAACTCCACCT AACAGCCTTAGGGAAATTAAAGATGATTGCAGGAAAAAAGTTTGTAAGAAGTCATCTTGTAATTTTTTTTTCTTTCATGT TTTCTTTTCTCTTGGATAGATGAAATTTGTATTATTTGAAAATAGTTCATATTCTTTATTAATATTGTTTAGGAGTGTTT AGGAGTTTGAGATTTACAGTTGTTCGTCAAGGATTGTTAAAAGTGAGAGTTGTAACCTGTTTTGATGGTTACGTTTAACA TATTCATCTGTTCATTTGTTGTGTTAAAGCTCATGGTATGTTAGCTTTACCCTTAGAGCATCTTCAATGCAAGGTTTTTA GTTCTTATTTTTTAGTTAAGGGGATGACATGAAGTTCTTAGTTCTTAAAAATAAGAACTAGGTTCTTAGAGCATCTCCAA TGGTGAG
CDS sequence (LotjaGi4g1v0354100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGACAATACTGCTTCTTCTTCTGGTGCACCATCTTCTTCTGATATTGCTGCTTTTGCATTATCAGAAAATGGAGT GCTTAACAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAGGTGGTGTCCCTCTCACCCAAGACCT TACTAGAATCAGACAGGTATGTGTGTGAGATCTGCAACCAAGGCTTTCAGAGGGACCAGAATCTGCAAATGCACAGGAGA AGGCACAAGGTGCCATGGAAACTCCTGAAAAGAGAAACCACACAAGGGCAGAAGAAAAGGGTGTTTGTGTGCCCTGAGCC AAGTTGTTTGCACCATGACCCTTGCCATGCCCTTGGTGACCTTGTTGGAATCAAGAAACACTTCAGGAGGAAGCACAGCA ATCACAAGCAGTGGGTTTGTGACAAATGTAACAAAGGGTATGCTGTGCAATCTGATTACAAGGCGCATGTCAAAACATGT GGTACCAGAGGGCACTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACATGCAA TATGCGGCTGCCACGGCAAGAGTTACAAGCACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAA ATGAGGCCAATTTTAGCATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCACCACCAGCTGATCAGCCATCAACTTCA AACACACACAACTTAGAACTTCAGCTCTTATCACCTTCTTCAACAATCCCCAAAGAAAATAGAAATCCCAGGGAAAACCA TAATGAGACCCGTTTGAAGCTCTCAATAGGTTCATGTACTAATAATGATGGTCACATAGGGAATGAAGAATCAGAAAGGA ATAATAATAATAATGTTGTGGGTGATAATTCCATTTTCGAAGTGGCAAGGCTGAAAGAGTTTGCTGGTGAGGAACTCAAG TTGGCGATGGCGGAGAAGGCTTACGCGGAAGAGGCTAGGAGAGAAGCGAAGCGCCAAATTGAGATAGCTGAGGTTGAGTT TGAGAATGCTAAGAGGATAAGGAAACAAGCGCAAGCTGAGCTCGGAAAAGCTGAAGATTTGAGAAAGCAAGCAATGAAGA AGATTAGCTCCACTGTTATGGAAATAACTTGTCAAGCTTGCAAGCAGCAGTTTCAGAACTCAACTGTTGCATCAGATCAA GAAACTTCCATTGTGGTGAGTTACGTGTCCTCAGCCAACACAGAAGGCGAAGCTGCAGAAGAATGA
Protein sequence (LotjaGi4g1v0354100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDNTASSSGAPSSSDIAAFALSENGVLNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRR RHKVPWKLLKRETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVKTC GTRGHSCDCGRVFSRVESFIEHQDTCNMRLPRQELQALQPACSSRTASSTSPSNEANFSIAPLQGLPLPKPPPADQPSTS NTHNLELQLLSPSSTIPKENRNPRENHNETRLKLSIGSCTNNDGHIGNEESERNNNNNVVGDNSIFEVARLKEFAGEELK LAMAEKAYAEEARREAKRQIEIAEVEFENAKRIRKQAQAELGKAEDLRKQAMKKISSTVMEITCQACKQQFQNSTVASDQ ETSIVVSYVSSANTEGEAAEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 2.8E-210 | ||
| PANTHER | 1 | 418 | 418 | 2.8E-210 | – | |
| MobiDBLite | 24 | 48 | 25 | - | – | |
| SUPERFAMILY | 59 | 158 | 100 | 2.36E-5 | ||
| Pfam | 60 | 82 | 23 | 0.0038 | ||
| SMART | 60 | 82 | 23 | 0.0052 | ||
| ProSiteProfiles | 60 | 82 | 23 | 10.97 | ||
| ProSitePatterns | 62 | 82 | 21 | - | ||
| SMART | 102 | 132 | 31 | 210.0 | ||
| Gene3D | 123 | 196 | 74 | 3.5E-6 | – | |
| SMART | 138 | 165 | 28 | 52.0 | ||
| MobiDBLite | 200 | 220 | 21 | - | – | |
| MobiDBLite | 200 | 270 | 71 | - | – | |
| MobiDBLite | 237 | 259 | 23 | - | – | |
| Coils | 319 | 374 | 56 | - | – | |
| CDD | 321 | 374 | 54 | 5.37507E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Gravitropism | The orientation of plant parts under the stimulation of gravity. |
Expression pattern of LotjaGi4g1v0354100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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