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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0366400 |
| Transcript ID | LotjaGi4g1v0366400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74610340..74615912) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGTGGCACGCGCCTGGCGGTCACCAACCAGGGCGTGCCACGTGTCTCCGGATACCCCTTTAAACAAGTGTTGAAACT CTTCAACACTTCTCTCTCCCTTTCAACATTAAACTACCCCTTTCAACACCATTATACTACATTTTCAACATTAAACACAT CATATTCAACACCATTGTAACCAGTCTAATAAGTGTGTTGAGAGAGAAAGAGAGACAAAAGAGTGAGAAACAAGAGAGAG AGCTCCATCCTACTGTGTCCAACTGTCACCTGCTACCACTACTATTTCTGCCTCTCCTCATCCCAACCCAAATGGAATTC AAACCATTTTCTCCCTTTCTCCCTCTTCACCATTCCAGTAAGTTCCACTCTCTCTCTCTCTCTAAATTTCATTGATTTTC CATTATCACAGTATGAGATTCTTCATATTCATCTTCTTCAGTATTAATATTATTTAATGAAGATTAATGATTACTGTGTG TGGCTACTGCTATGCTCTGCTAGTGTTACTTTTGCACTGTTTGTTTCCATTTCTGGTAGAGTCAGATTGCTACTTCCTTT TTCTCTCAACACTTGAATAATCAATGAAAATTAAAGTAAAGGTTGCACCTTTTCACACCCCCAAAAAAAGGTGCTTTTTT TCCTTTCATTGGTTTCACTCCTTCGTCTTCTTTCCCTTCTCATCTTTGTCTGCATACCCTTTTCTCATTTTCTTGGGAAT GCAGCTTCGCTGAGAAAAGCTAGGTTTTTTCATCAAAATTGCTTCCCTTTCTTCTCTCACTCTCTCACTGTGCTTTTTCA AGGTAAAGGGACCAGCACTTTCCTCTGTACTTCACTAGCTAGTAGCAATTAGTAACCGAATTCACGGGGTGCCATTATAT CTCAAAACTTTAGCACCACAAGGATAAAAATCCAATCTTTTGTTTTTTTTTCAAATGATATTTATGTGTGTTATTTTTGT GTATGAAGAGTGAGTAATTAGTAATATTACATTCTACCTTTTTTCTATGTTGATGCTTTTGAGTTCAATGATAGATAGGG TCATGTTCATAGCAAAAATGATAGGTCATTTTCTTGTAGGTCCCATGAAGTAGCATTTGATGTAAATGCTCTACTATTAT TGCTGTGTTTTTGTTGGGGGGTCTTGATTGATTGGTTTAGGGTATTTATGATTAGGGAGGTTGGTTGTTGACCTTAATTT AGAAAGTAAATCAAAGGGCTAACACTGGCTACTGTTTGTTTTCTGAGTGCTAAAAGTCATGCTATGTTTATATAAATCAC CTTATGTGGGTCTTTTGTTGGGGAGGCTCCTTCAATTAGCAACTACTTCTGACATTGTGGTGGTGATACATGCTAATTAT TTGTTTGAAGCTTCCAATGTTGAAAGGGAAGTTTTGCTAACTGTAGGAGGAGATCAAACACATCACTGCCTTAGGGGGAA TACCTTGCAGGTGTAGTTTAAGGAATTGATAGTACTTTCTGTTCATGCTATGAAGTAATTATAAGATGTCCTTCTAAATG GTAGTGAAGTTTAGTTTTTGGAAATTGGTGTAGAGTTTACCCTGTGCAGGAGCTAAGCTATTTGGTTTGCATTTAAAATT TACCAGGACAAAGTACAAATTATAAATGTATGATACCACTAAACTGCAGCCACCTATCTGCCTGCCAACCCATGTTTGGG ATTTGCAGAACATTGTTGATTTAATGTTGTCATTGTAAGATTAATGATGATTGCCTTAGCAATTAGTACTACATTAGTTA TTTTAAACTTGTTGCAGTTTCACATTTTTTAGGTGTCACAAATGCTCCTCCTATGTGTTTTTATGATTTCTCTACTGAAT CCACACAGTGATTCTTGATACCTTTTGCTTCTTGTGAATAGTTAGTCCAATTTTTGTGTGGTTTCTTTGACTTGTTAAAT TTCCTTAGAGATTTGTTTTACTTTTCCTTCTTCTAGAGAACCTGTAACAGCAGCAATTTCATTTGAACTATAGTTTGCAG AGTGCTGAATTTCTGAGCACTTCTGATGGAGTGGAATTCAAAATCGCCCTCGCAGTGGGACTTGGAGTACTTATCATTCT TCAATCCAAAAGCAACAGAAAATCCAAAATTACAACCAGTTAACACGAGTGCTGAAGAGAACCAAGAAATCAATGCTGGG ATGTTGGACACATCTGGTGGCAGTGGTTGTTCGGGGTCTGAGCTAATACATGCTTCTTCATCAAGGAGTTCAAAATCAAA TTCTATCAGCTCATCATCAAATAGGGATAGCAAAACATCTACATTCACTTTTGAAAGTTCCAGTGGTAAAAAAGAATTAT CTAAAGAAGAGCCAGTTGAAACTTCTCAGGCACCAGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTGAAGCTC GGTAAGCGTTTGTACTTTGAGGATGGGTACCCAGGAAGTGATTCTAAAAACCTATCTTTCTCCGGGGCTCCTATTTCATC TTTGAACACAGGAAAGAAATGTAAATCCAATGGTCAGGACATACATTATCCATGCTGCCAGGTTGATGGCTGTGGCCTTG ACCTTTCATCAGCTAAAGATTATCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTCATTGCT GGTTTGGAACGTCGATTTTGTCAGCAATGTAGCAGGTAAAGCTTATAAACAAACATATGATTGCTTGGATGAAATTGACA TTGAGAAATTAATATTTTTCATGTATTGATAAATTCTCTGTACCATATCATTAAGAATTAGTCAATCTGATTCAGCTTTC TGTCTTGTGTTGAATAAACTGGGTAAGATTGATCACTTTGCTTATAACGTTGAAGGTTTCATGGACTGCTAGAGTTTGAT GAAAAAAAGCGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCTAGGCGACGTAAACCTTATCCTCAAGCTGTCCAACT AAGTCAATCAGCTTTGTCTTCACCTCACTGTGGTATAACTCTTCAAACTCAGTAATGCCCCCTTCCTAGGGAAAGTCAGT CAATCTTGTCAGATCAACTTAGTTTGTAGTTTAATTTAAATTTCTGTTGCATGTTGGATATCTTATAGTGATTTTGTTTG TAATCATAACTGTTTCTCGGCTGGTGATAATACTTGTTTTGCCTTAGTTTTCCATTTTATCTTAAACTTCTGCTGGTAAT CTGTTTTTGGTTGTTAAAACTAAAAAATGATATCTAAAAGTTCAGTACAAAGTTAGGAAGGCCTTAGCTGACTACTCATA TTGCTGAATAAAAAAATATTGAATTGATTTACTTTACTTCTTAACTTTTTTCTGCTGTCCTAGTTTACCTGCATTAGAAC GTAAAGTTAAGTGTAACATGATAGAACTTCTTAGTCTTCCACAATTTCTTTTCGTTTGAACCTGTTACAAATTCTATTAA TTTATCTTTTATATGGATTTTATTGATTTTTCAGTTGCTATGTATCTGAACTTAATGATTGTTGGTCATCTGTGACACAC ATAAGTTAAGCCATGTTCAAAAATTCTAGCGGTTACAGTTCCATTATTAACCATGTCTCTCTGCGTATAAGAGCCATAAT AGTTATGTTGTTTAGTCAAATATTTTATCTGTTTGATCATTTATTACTGTCAGAAGAGATTTTACTATCACAGTTGTGGA TACTGAGATGGTTGAAGTTACAAGACACAGTAAATCGCCAAAGTCTTGAGAAAACTAGGGGCATGTTCTATGTGAACCCA AAGAAATGTTTCTGGCATCTTTTACAACAGCAAAAGATGCAAATAATTGTCAAGATTGCTTGTGCGTGAGTACTGACATT TTACTTGCGGGATTTATGCATGTATGGATATGTCCTTAGTCTGTTACAAACCTGATTTAGTAAAAATGCTTCAAACTGTG CTGCTAGTCATAACTTAAGCCAAAGAATGGCCAATTTTAGTGTGTTCTAGACTTCTAGTTAGTAGGTAGGTTACAGTTAA TTGTAAGCTAGTCACTTCATATTGATGCAAGTTTTACAATTCACTCCTATCTTATATCTTTATTCTGCAGATGGGACACA ACAGATGAGTCCATTTGCTTATTCAAGGACTACTACAAATGTAGCTTGGCAAAACATTCACAGAAGCAATGTCAACCATA CAAAAGATCTTTTCATGAAGCCTGCAAAAGCCAGTAATGAGATACCAAATATTTTCTCCATTCTTTCTGATGATTCCAAT ATCTGTTTTGCATCCAAAGGCATTGCAACCAAGAACATTAATCCAGGTTGATTTACATCTTAATTTCATAATCTTTGCCT TAGGTTGTTGTATTTATCATGTAGATATACCATAATTATGTTGGCGACATTGATTGCTAACTTCATCTTAGAATTACTAG TTTTTTCCACCTATTCATGTGAAAATAAATGTATACTTCAAAGAATTTTGGAAAGGTTATACTTGAAGGCAATATTACTC ATTTGGTACAATATCTTCTGCAGGTATAGAAGATAACATTACCTCGGAAGCAAATGCTACACAAGATTTTCACAGTGCTC TCTCTCTTCTGTCAACAAATTCATGGGGTTCATACGAGACAAAACCCTTTTCTCTAGAACAGCCCAATCACACAACCAGT AACACTCAGCCCATGATAAATGCTATGAGTCCACGCTTTCCTCCTGCGTCATCTGAATATTGGCACGCTGATCAACAAGT GAATTCCACCGCGTGGATCTCGTACTCAAATTCTGATGACAGTAACCGCTTTCATGAATTCCCACTTTTCAGAGACACAT ACGAGTCTGGTTTTCCTTACGACCAGTTGGGTTAACACGAATGTTCTCATCTGAATAGTTTCAACCTGATGATCATGCAC ACCAGGTTAGTTCCATCTGATGTTGTCTGTTTATGCCGCCTAATTTATTGTTTGCAATGACCATATTTATTGTTAGCTGA CTTTACTTTCAGACTAGTGGAGCTTGATTTGAACATAAAATGGAAATATTGAACATTTAAACATCTTGTTTGCTATTTTT TTTTATCCAGTATCTGTTCTATTCTAATGCTCATTCTTACCTCTTATCAATTTTCCTCTTCCTAACTCTAACTCTTTTCT ACTTTCCAGGTTGCACCTCAGTTCTTTTGCTCGATTTGCTGTTACTATCTTGTTCATCAATGGTTCACTGTATGTCTCCT GAAGTTGAATCTCCTCTAGGAGTAACACTAATATCATGATAGTTCAACATGATCAATATCACTTGATGAATTCTCGGTCT AAGAAGATTTCCTTTACCCCTTTGTATTGCACATGTCACAGAAAACGTGCATCACTCAAGTGTTTTTCCTTCTAATGATT TGTTGACCTTTATAGGCGATTTAACTTCTACTTATTATGTATTCGACTTTGCAACTTATCTCTTCTACGTTTATAAATTA ATCTCCCCGTTTCGATGTTGGATCGGGATCCCCGGTCCCAAAATGATGTCTCATTCTCTGTCCTAACCAATAAAATAATA ACCTTACATCAGTGGTTTTAATTTAAATGACAAATTTTATTGGTGCAAGTGTG
CDS sequence (LotjaGi4g1v0366400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGAATTCAAAATCGCCCTCGCAGTGGGACTTGGAGTACTTATCATTCTTCAATCCAAAAGCAACAGAAAATCC AAAATTACAACCAGTTAACACGAGTGCTGAAGAGAACCAAGAAATCAATGCTGGGATGTTGGACACATCTGGTGGCAGTG GTTGTTCGGGGTCTGAGCTAATACATGCTTCTTCATCAAGGAGTTCAAAATCAAATTCTATCAGCTCATCATCAAATAGG GATAGCAAAACATCTACATTCACTTTTGAAAGTTCCAGTGGTAAAAAAGAATTATCTAAAGAAGAGCCAGTTGAAACTTC TCAGGCACCAGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTGAAGCTCGGTAAGCGTTTGTACTTTGAGGATG GGTACCCAGGAAGTGATTCTAAAAACCTATCTTTCTCCGGGGCTCCTATTTCATCTTTGAACACAGGAAAGAAATGTAAA TCCAATGGTCAGGACATACATTATCCATGCTGCCAGGTTGATGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTATCA TCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTCATTGCTGGTTTGGAACGTCGATTTTGTCAGC AATGTAGCAGGTTTCATGGACTGCTAGAGTTTGATGAAAAAAAGCGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCT AGGCGACGTAAACCTTATCCTCAAGCTGTCCAACTAAGTCAATCAGCTTTGTCTTCACCTCACTGTGATGGGACACAACA GATGAGTCCATTTGCTTATTCAAGGACTACTACAAATGTAGCTTGGCAAAACATTCACAGAAGCAATGTCAACCATACAA AAGATCTTTTCATGAAGCCTGCAAAAGCCAGTAATGAGATACCAAATATTTTCTCCATTCTTTCTGATGATTCCAATATC TGTTTTGCATCCAAAGGCATTGCAACCAAGAACATTAATCCAGGTATAGAAGATAACATTACCTCGGAAGCAAATGCTAC ACAAGATTTTCACAGTGCTCTCTCTCTTCTGTCAACAAATTCATGGGGTTCATACGAGACAAAACCCTTTTCTCTAGAAC AGCCCAATCACACAACCAGTAACACTCAGCCCATGATAAATGCTATGAGTCCACGCTTTCCTCCTGCGTCATCTGAATAT TGGCACGCTGATCAACAAGTGAATTCCACCGCGTGGATCTCGTACTCAAATTCTGATGACAGTAACCGCTTTCATGAATT CCCACTTTTCAGAGACACATACGAGTCTGGTTTTCCTTACGACCAGTTGGGTTAA
Protein sequence (LotjaGi4g1v0366400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWNSKSPSQWDLEYLSFFNPKATENPKLQPVNTSAEENQEINAGMLDTSGGSGCSGSELIHASSSRSSKSNSISSSSNR DSKTSTFTFESSSGKKELSKEEPVETSQAPEPSSVSGEPLLTLKLGKRLYFEDGYPGSDSKNLSFSGAPISSLNTGKKCK SNGQDIHYPCCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNA RRRKPYPQAVQLSQSALSSPHCDGTQQMSPFAYSRTTTNVAWQNIHRSNVNHTKDLFMKPAKASNEIPNIFSILSDDSNI CFASKGIATKNINPGIEDNITSEANATQDFHSALSLLSTNSWGSYETKPFSLEQPNHTTSNTQPMINAMSPRFPPASSEY WHADQQVNSTAWISYSNSDDSNRFHEFPLFRDTYESGFPYDQLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 93 | 71 | - | – | |
| MobiDBLite | 23 | 118 | 96 | - | – | |
| PANTHER | 36 | 408 | 373 | 4.5E-90 | – | |
| PANTHER | 36 | 408 | 373 | 4.5E-90 | – | |
| Gene3D | 161 | 232 | 72 | 2.4E-33 | ||
| ProSiteProfiles | 168 | 245 | 78 | 32.573 | ||
| SUPERFAMILY | 169 | 250 | 82 | 2.22E-38 | ||
| Pfam | 171 | 244 | 74 | 1.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0366400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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