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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0366400 |
| Transcript ID | LotjaGi4g1v0366400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT5G43270.1 squamosa promoter binding protein-like 2; Swiss-Prot: sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12; TrEMBL-Plants: tr|A0A1J7GZ95|A0A1J7GZ95_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0366400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74610386..74615679) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAGAGCTCCATCCTACTGTGTCCAACTGTCACCTGCTACCACTACTATTTCTGCCTCTCCTCATCCCAACCCAAAT GGAATTCAAACCATTTTCTCCCTTTCTCCCTCTTCACCATTCCAGTAAGTTCCACTCTCTCTCTCTCTCTAAATTTCATT GATTTTCCATTATCACAGTATGAGATTCTTCATATTCATCTTCTTCAGTATTAATATTATTTAATGAAGATTAATGATTA CTGTGTGTGGCTACTGCTATGCTCTGCTAGTGTTACTTTTGCACTGTTTGTTTCCATTTCTGGTAGAGTCAGATTGCTAC TTCCTTTTTCTCTCAACACTTGAATAATCAATGAAAATTAAAGTAAAGGTTGCACCTTTTCACACCCCCAAAAAAAGGTG CTTTTTTTCCTTTCATTGGTTTCACTCCTTCGTCTTCTTTCCCTTCTCATCTTTGTCTGCATACCCTTTTCTCATTTTCT TGGGAATGCAGCTTCGCTGAGAAAAGCTAGGTTTTTTCATCAAAATTGCTTCCCTTTCTTCTCTCACTCTCTCACTGTGC TTTTTCAAGGTAAAGGGACCAGCACTTTCCTCTGTACTTCACTAGCTAGTAGCAATTAGTAACCGAATTCACGGGGTGCC ATTATATCTCAAAACTTTAGCACCACAAGGATAAAAATCCAATCTTTTGTTTTTTTTTCAAATGATATTTATGTGTGTTA TTTTTGTGTATGAAGAGTGAGTAATTAGTAATATTACATTCTACCTTTTTTCTATGTTGATGCTTTTGAGTTCAATGATA GATAGGGTCATGTTCATAGCAAAAATGATAGGTCATTTTCTTGTAGGTCCCATGAAGTAGCATTTGATGTAAATGCTCTA CTATTATTGCTGTGTTTTTGTTGGGGGGTCTTGATTGATTGGTTTAGGGTATTTATGATTAGGGAGGTTGGTTGTTGACC TTAATTTAGAAAGTAAATCAAAGGGCTAACACTGGCTACTGTTTGTTTTCTGAGTGCTAAAAGTCATGCTATGTTTATAT AAATCACCTTATGTGGGTCTTTTGTTGGGGAGGCTCCTTCAATTAGCAACTACTTCTGACATTGTGGTGGTGATACATGC TAATTATTTGTTTGAAGCTTCCAATGTTGAAAGGGAAGTTTTGCTAACTGTAGGAGGAGATCAAACACATCACTGCCTTA GGGGGAATACCTTGCAGGTGTAGTTTAAGGAATTGATAGTACTTTCTGTTCATGCTATGAAGTAATTATAAGATGTCCTT CTAAATGGTAGTGAAGTTTAGTTTTTGGAAATTGGTGTAGAGTTTACCCTGTGCAGGAGCTAAGCTATTTGGTTTGCATT TAAAATTTACCAGGACAAAGTACAAATTATAAATGTATGATACCACTAAACTGCAGCCACCTATCTGCCTGCCAACCCAT GTTTGGGATTTGCAGAACATTGTTGATTTAATGTTGTCATTGTAAGATTAATGATGATTGCCTTAGCAATTAGTACTACA TTAGTTATTTTAAACTTGTTGCAGTTTCACATTTTTTAGGTGTCACAAATGCTCCTCCTATGTGTTTTTATGATTTCTCT ACTGAATCCACACAGTGATTCTTGATACCTTTTGCTTCTTGTGAATAGTTAGTCCAATTTTTGTGTGGTTTCTTTGACTT GTTAAATTTCCTTAGAGATTTGTTTTACTTTTCCTTCTTCTAGAGAACCTGTAACAGCAGCAATTTCATTTGAACTATAG TTTGCAGAGTGCTGAATTTCTGAGCACTTCTGATGGAGTGGAATTCAAAATCGCCCTCGCAGTGGGACTTGGAGTACTTA TCATTCTTCAATCCAAAAGCAACAGAAAATCCAAAATTACAACCAGTTAACACGAGTGCTGAAGAGAACCAAGAAATCAA TGCTGGGATGTTGGACACATCTGGTGGCAGTGGTTGTTCGGGGTCTGAGCTAATACATGCTTCTTCATCAAGGAGTTCAA AATCAAATTCTATCAGCTCATCATCAAATAGGGATAGCAAAACATCTACATTCACTTTTGAAAGTTCCAGTGGTAAAAAA GAATTATCTAAAGAAGAGCCAGTTGAAACTTCTCAGGCACCAGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTCACTCT GAAGCTCGGTAAGCGTTTGTACTTTGAGGATGGGTACCCAGGAAGTGATTCTAAAAACCTATCTTTCTCCGGGGCTCCTA TTTCATCTTTGAACACAGGAAAGAAATGTAAATCCAATGGTCAGGACATACATTATCCATGCTGCCAGGTTGATGGCTGT GGCCTTGACCTTTCATCAGCTAAAGATTATCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGT CATTGCTGGTTTGGAACGTCGATTTTGTCAGCAATGTAGCAGGTAAAGCTTATAAACAAACATATGATTGCTTGGATGAA ATTGACATTGAGAAATTAATATTTTTCATGTATTGATAAATTCTCTGTACCATATCATTAAGAATTAGTCAATCTGATTC AGCTTTCTGTCTTGTGTTGAATAAACTGGGTAAGATTGATCACTTTGCTTATAACGTTGAAGGTTTCATGGACTGCTAGA GTTTGATGAAAAAAAGCGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCTAGGCGACGTAAACCTTATCCTCAAGCTG TCCAACTAAGTCAATCAGCTTTGTCTTCACCTCACTGTGGTATAACTCTTCAAACTCAGTAATGCCCCCTTCCTAGGGAA AGTCAGTCAATCTTGTCAGATCAACTTAGTTTGTAGTTTAATTTAAATTTCTGTTGCATGTTGGATATCTTATAGTGATT TTGTTTGTAATCATAACTGTTTCTCGGCTGGTGATAATACTTGTTTTGCCTTAGTTTTCCATTTTATCTTAAACTTCTGC TGGTAATCTGTTTTTGGTTGTTAAAACTAAAAAATGATATCTAAAAGTTCAGTACAAAGTTAGGAAGGCCTTAGCTGACT ACTCATATTGCTGAATAAAAAAATATTGAATTGATTTACTTTACTTCTTAACTTTTTTCTGCTGTCCTAGTTTACCTGCA TTAGAACGTAAAGTTAAGTGTAACATGATAGAACTTCTTAGTCTTCCACAATTTCTTTTCGTTTGAACCTGTTACAAATT CTATTAATTTATCTTTTATATGGATTTTATTGATTTTTCAGTTGCTATGTATCTGAACTTAATGATTGTTGGTCATCTGT GACACACATAAGTTAAGCCATGTTCAAAAATTCTAGCGGTTACAGTTCCATTATTAACCATGTCTCTCTGCGTATAAGAG CCATAATAGTTATGTTGTTTAGTCAAATATTTTATCTGTTTGATCATTTATTACTGTCAGAAGAGATTTTACTATCACAG TTGTGGATACTGAGATGGTTGAAGTTACAAGACACAGTAAATCGCCAAAGTCTTGAGAAAACTAGGGGCATGTTCTATGT GAACCCAAAGAAATGTTTCTGGCATCTTTTACAACAGCAAAAGATGCAAATAATTGTCAAGATTGCTTGTGCGTGAGTAC TGACATTTTACTTGCGGGATTTATGCATGTATGGATATGTCCTTAGTCTGTTACAAACCTGATTTAGTAAAAATGCTTCA AACTGTGCTGCTAGTCATAACTTAAGCCAAAGAATGGCCAATTTTAGTGTGTTCTAGACTTCTAGTTAGTAGGTAGGTTA CAGTTAATTGTAAGCTAGTCACTTCATATTGATGCAAGTTTTACAATTCACTCCTATCTTATATCTTTATTCTGCAGATG GGACACAACAGATGAGTCCATTTGCTTATTCAAGGACTACTACAAATGTAGCTTGGCAAAACATTCACAGAAGCAATGTC AACCATACAAAAGATCTTTTCATGAAGCCTGCAAAAGCCAGTAATGAGATACCAAATATTTTCTCCATTCTTTCTGATGA TTCCAATATCTGTTTTGCATCCAAAGGCATTGCAACCAAGAACATTAATCCAGGTTGATTTACATCTTAATTTCATAATC TTTGCCTTAGGTTGTTGTATTTATCATGTAGATATACCATAATTATGTTGGCGACATTGATTGCTAACTTCATCTTAGAA TTACTAGTTTTTTCCACCTATTCATGTGAAAATAAATGTATACTTCAAAGAATTTTGGAAAGGTTATACTTGAAGGCAAT ATTACTCATTTGGTACAATATCTTCTGCAGGTATAGAAGATAACATTACCTCGGAAGCAAATGCTACACAAGATTTTCAC AGTGCTCTCTCTCTTCTGTCAACAAATTCATGGGGTTCATACGAGACAAAACCCTTTTCTCTAGAACAGCCCAATCACAC AACCAGTAACACTCAGCCCATGATAAATGCTATGAGTCCACGCTTTCCTCCTGCGTCATCTGAATATTGGCACGCTGATC AACAAGTGAATTCCACCGCGTGGATCTCGTACTCAAATTCTGATGACAGTAACCGCTTTCATGAATTCCCACTTTTCAGA GACACATACGAGTCTGGTTTTCCTTACGACCAGTTGGGTTAACACGAATGTTCTCATCTGAATAGTTTCAACCTGATGAT CATGCACACCAGGTTAGTTCCATCTGATGTTGTCTGTTTATGCCGCCTAATTTATTGTTTGCAATGACCATATTTATTGT TAGCTGACTTTACTTTCAGACTAGTGGAGCTTGATTTGAACATAAAATGGAAATATTGAACATTTAAACATCTTGTTTGC TATTTTTTTTTATCCAGTATCTGTTCTATTCTAATGCTCATTCTTACCTCTTATCAATTTTCCTCTTCCTAACTCTAACT CTTTTCTACTTTCCAGGTTGCACCTCAGTTCTTTTGCTCGATTTGCTGTTACTATCTTGTTCATCAATGGTTCACTGTAT GTCTCCTGAAGTTGAATCTCCTCTAGGAGTAACACTAATATCATGATAGTTCAACATGATCAATATCACTTGATGAATTC TCGGTCTAAGAAGATTTCCTTTACCCCTTTGTATTGCACATGTCACAGAAAACGTGCATCACTCAAGTGTTTTTCCTTCT AATGATTTGTTGACCTTTATAGGCGATTTAACTTCTACTTATTATGTATTCGACTTTGCAACTTATCTCTTCTACGTTTA TAAATTAATCTCCCCGTTTCGATGTTGGATCGGGATCCCCGGTCCCAAAATGATGTCTCATTCTCTGTCCTAACCAATAA AATAATAACCTTAC
CDS sequence (LotjaGi4g1v0366400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGAATTCAAAATCGCCCTCGCAGTGGGACTTGGAGTACTTATCATTCTTCAATCCAAAAGCAACAGAAAATCC AAAATTACAACCAGTTAACACGAGTGCTGAAGAGAACCAAGAAATCAATGCTGGGATGTTGGACACATCTGGTGGCAGTG GTTGTTCGGGGTCTGAGCTAATACATGCTTCTTCATCAAGGAGTTCAAAATCAAATTCTATCAGCTCATCATCAAATAGG GATAGCAAAACATCTACATTCACTTTTGAAAGTTCCAGTGGTAAAAAAGAATTATCTAAAGAAGAGCCAGTTGAAACTTC TCAGGCACCAGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTGAAGCTCGGTAAGCGTTTGTACTTTGAGGATG GGTACCCAGGAAGTGATTCTAAAAACCTATCTTTCTCCGGGGCTCCTATTTCATCTTTGAACACAGGAAAGAAATGTAAA TCCAATGGTCAGGACATACATTATCCATGCTGCCAGGTTGATGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTATCA TCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTCATTGCTGGTTTGGAACGTCGATTTTGTCAGC AATGTAGCAGGTTTCATGGACTGCTAGAGTTTGATGAAAAAAAGCGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCT AGGCGACGTAAACCTTATCCTCAAGCTGTCCAACTAAGTCAATCAGCTTTGTCTTCACCTCACTGTGATGGGACACAACA GATGAGTCCATTTGCTTATTCAAGGACTACTACAAATGTAGCTTGGCAAAACATTCACAGAAGCAATGTCAACCATACAA AAGATCTTTTCATGAAGCCTGCAAAAGCCAGTAATGAGATACCAAATATTTTCTCCATTCTTTCTGATGATTCCAATATC TGTTTTGCATCCAAAGGCATTGCAACCAAGAACATTAATCCAGGTATAGAAGATAACATTACCTCGGAAGCAAATGCTAC ACAAGATTTTCACAGTGCTCTCTCTCTTCTGTCAACAAATTCATGGGGTTCATACGAGACAAAACCCTTTTCTCTAGAAC AGCCCAATCACACAACCAGTAACACTCAGCCCATGATAAATGCTATGAGTCCACGCTTTCCTCCTGCGTCATCTGAATAT TGGCACGCTGATCAACAAGTGAATTCCACCGCGTGGATCTCGTACTCAAATTCTGATGACAGTAACCGCTTTCATGAATT CCCACTTTTCAGAGACACATACGAGTCTGGTTTTCCTTACGACCAGTTGGGTTAA
Protein sequence (LotjaGi4g1v0366400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWNSKSPSQWDLEYLSFFNPKATENPKLQPVNTSAEENQEINAGMLDTSGGSGCSGSELIHASSSRSSKSNSISSSSNR DSKTSTFTFESSSGKKELSKEEPVETSQAPEPSSVSGEPLLTLKLGKRLYFEDGYPGSDSKNLSFSGAPISSLNTGKKCK SNGQDIHYPCCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNA RRRKPYPQAVQLSQSALSSPHCDGTQQMSPFAYSRTTTNVAWQNIHRSNVNHTKDLFMKPAKASNEIPNIFSILSDDSNI CFASKGIATKNINPGIEDNITSEANATQDFHSALSLLSTNSWGSYETKPFSLEQPNHTTSNTQPMINAMSPRFPPASSEY WHADQQVNSTAWISYSNSDDSNRFHEFPLFRDTYESGFPYDQLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 93 | 71 | - | – | |
| MobiDBLite | 23 | 118 | 96 | - | – | |
| PANTHER | 36 | 408 | 373 | 4.5E-90 | – | |
| PANTHER | 36 | 408 | 373 | 4.5E-90 | – | |
| Gene3D | 161 | 232 | 72 | 2.4E-33 | ||
| ProSiteProfiles | 168 | 245 | 78 | 32.573 | ||
| SUPERFAMILY | 169 | 250 | 82 | 2.22E-38 | ||
| Pfam | 171 | 244 | 74 | 1.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0366400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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