Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0372500 |
| Transcript ID | LotjaGi4g1v0372500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamyl-tRNA (Gln) amidotransferase subunit A; TAIR: AT4G34880.2 Amidase family protein; Swiss-Prot: sp|Q9URY4|YI01_SCHPO Putative amidase C869.01; TrEMBL-Plants: tr|A0A072U458|A0A072U458_MEDTR Amidase C869.01-like protein, putative; Found in the gene: LotjaGi4g1v0372500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75223634..75227533) extracted from Lotus japonicus Gifu genome v1.2.
TATTACAAAATATAATTCTAACATTGCCTTTTGCGGTAGTTGAGAACAACCTCGTCCACTTCTTTATAATATGGATGTTG TGATGGCAAAGCGCATGTTTCATGTGGGACTCTATATACTCAAACAATGTGAGTCAGAATATTACAGTGGCTACTTTGCA GCAAAGTGAGTGCTCTCATGGCTTCAGTACATGGTTACTCTCTCTTCCAATTCTTTTCTGTGATCTTTCTGATCACATCA GCCAATGGATTCTCAATCAAGGAAGCAACTGTGCATGATCTCCAACTTGCTTTCAAGAGAAACCAATTAACCTCTAAGCA ACTTGTTGAGTTCTATCTCAAACAAATACAAATCCAGAACCCAGTTCTCAAAGGGGTGTTGGAGGTGAATCCAGATGCAG TAGCAGAAGCAGAAAGAGCTGACAAGGAGAGAAAAAAGGCTAAGGAAACAGGGTATCTGCTTTCAGGATTACATGGAATA CCAATTTTGGTGAAGGATAACATTGCAAGTAAGGATAAGCTTAACACCACTGCAGGCTCTTATGCTCTGCTTGGCTCTGT GGTGCCTAGAGATGCTGGTGTTGTTGCAAGGTTAAGGAAAGCTGGGGCTATCATATTAGGAAAGGCCAGTTTGAGTGAGT GGTCTTATTTCAGATCCAATGGAGCACCCAGCGGTTGGAGCGCCAGAGGTGGACAAGGAAAGGTAATTTTTCTTCTTGTT CTTACTTATAGCATGTTTGATTCTTATTGGAGATGTTAATTTATTATTAAACTGTATGGACATCTAGAGCATGAAATTTG CAAGAATGAATATATGCGGGTGGCTCATATACAAGTGATCTCCACTAAACGAATCTAGAATAAATATTATACCATGTTAA TGATCAATCACAGAAATGTAGGCATGAAATGAAATCTCTCATGTATTGAATTAACTGAAGATCATTTATATACAAGAGAA TGTTGAACTAGAGTTTGTTATGACTCACTTAACCATCTAACTACTCTGTAACTAACTCACTCGAAGTCATTATAGTTTTC AAAGTTGACTACTTATTCCGGTATGTTTTGATGCTACAAAGTAATTACCTGATTGAAAAACTTTAGAAAATAGCTGAATG ACTATAATGTAAGTGATTCTAAAAAGTCATGAGTTGACACATGTGATTTATGTTTGGCAGAATCCATATACATTGGGTGA TCCATGTGGGTCTAGTAGCGGATCAGCAATATCAGTAGCAGCAAATTTGGTAACAGTTTCTCTTGGTACTGAGACTGACG GCTCCATTTTATGCCCTTCAAATTCCAACTCAGTTGTGGGAATCAAACCAACAGTTGGTCTCACTAGCAGATCAGGGGTA GTTCCAATCAGCCCAAGACAAGACACAGTTGGGTAAGTCTATGACAATAGCTCCATTTTTTTCGAGTGTTATCAACACAC TCTTTTAAACAGGTTTGTAAACAAACTTAGAAAGCCAACACGTTTGACTCACTTCTTAAAAAAATGTGTTGACTTTGAAA AAATCAATCACACTGATTGTGTTGGGAAGTGTGTTGAAAAGAGTGTGTTGTTGACCTATATTTCATTGTAACAAACACTA TTTACAACAAATGTGTAACATTGTCTGGACTGGTATAGACCAATTTGCAGGACAGTATCAGATGCTGCTCTTGTTCTTGA AACTATTGCAGGCATTGATGCTTTTGATAAGGAAACAATTGAAGCATCAAAGTATATCCCAAAAGGTGGCTATACTCAAT ACCTGAAGAAAGATGGACTAAGGGGAAAGAGATTAGGAATAGTTAGGTCATACTATGATTTTGGAGATGATACCTTTCTC GATGAAACTTTTAAGCTACACCTAAAAACATTAAGGTAAGGAAAGTTACTATTTGTGTTAACTATTAGTATTTTTGGATC AGTTTATTTTTCCTCAAAATTAATTTTGGTATTCAGAAGCTACTCACGTAAGCTTCTTCCCAAAATTAATTTTGGCATTA GAATTAATTATAGAAGGATTTCTAAAATGAAGGTTGAGCAAGTCTCATATACTTCCTTCAAACTCAGGCAAAGAGGTGCA GTTTTGGTTGACCATTTGAAGATAGATAACATTGATGAAATATTCAGTGATTCAAGTGAAAGTATTGCTTTGGATTTTGA ATTCAAGTTATCCTTGAATGCATACTTGAAAGACTTAGTTGCTTCCCCGGTTCGAAGCTTGGCTGATGTAATAGCCTACA ACAAGAAACACCCAAAACTGGTGAGTTGTGAGAATTTGTTATTTGTTTATTGTCAACATAGATAAGATAATTGATAGTTT AAAGTAGTTGCGTTGTGACTTTCACATTACCTACAATCTTTCTCCATGTCACCTGGCCTTTTGCAAATGCTGTGTGGAGG ATTTTATCTTGACTGTTCTTTGAGAAAATTCTAGAATTTCCTTTTTTTGTAGAAGTTTCTGATAATTTTTCTCCTTTATT CTGAGGTTGAAATTTAAGCTTTGATTGGAAGACATTTTCAATTGTATCTTCAATAATAGGAACTTGACATTTTTGGTATG GCAATTGCAGGAGAAACTTGATGAGTATGGTCAAGATGTCATGCTGCAAGCTGAAAAGACAAATGGAATTGGGAAAGTAC TGGAGCAAGCATTGTTAAACATGACAAGATTGTCACAAAATGGATTTGAGAAACTAATGAAAAGAAACAAACTTGATGCT GTGGTGATACCTTCTTATAGCTTTAGTAACATCCTTGCTATTGGAGGTTACCCTGGAGTGATTGTTCCTGCTGGATATGA AAAGGGTGTGCCATTTGGAATTTGTTTTGGAGGTTTGAAAGGCTCAGAACCAAAACTGATAGAAATTGCCTATTCCTTTG AGCAAGCAACTATGATCAGGAAGCCTCCTCCACTTAGAAAGTTAAAGGTTTAAACATAATGCTTTAGTACAGAGTGTTAA AATGTAATGCAAATTTCTAGAATGTATTAGAAAGCTCTAGAAAATGATAGAAACATAGGCAATGTCAATTGCTAGAAATC TGTAGAATGAACAAATAATAAAAAATAAAGAACCGACATTATGAGTCGGTAATGTAAGGCCTATAAATAGGCCAGTGATC TTTGCATTGTATCAAGCAGCAAGTTGATCTTGCTAGCTTCACTCCTCCAATCTATATATGTTTCTATATCATTTCTAAAT TCTATCAACTATCAGTACCACATTAATTGCTTCAAACTATTTTCACCAAATACCAACTATTCAATTATCAACAAGAAGTG ATTGTTTATGAAATAAAGTGAAGAAGATATTGCTCGAGAGAGCTTTGAAGAAGAAATGAAGAACTGAATTTCATTATTCA AATTAACTATTTGTGTACATGACTATCCTTTATTACTACATGATTCTAGTGCTAGAAAATAAGAGGGAGTAAACTAGTCT CAAGTGAAAACTGAAAGAGGGACTATATCTAAACAATCACTACTTACAACACAAAGTAGTTAACTGTTAACTAACTAAAA ATGGAAAGCTGAAAACTAACTCCTAACCCTCTCTGCTTTGATCCTCTCTGCCTTTTCTGTGATTCTTCGCGTTACATCCC ACCTCAAGCTGAGCTTGATATCATGTTCAGCTTTGTCACTGGAGTATGAAACCGTGCTGGCTACAAAGAACAAATTAGTT GTTTGATCTAGAGTAGAAATAGGGAGCAATTTCATTAAACAATCTAGTGCCTTCTGTCGAACTATGTGGTAATCTATGCC TAGATGCTTATTTCTCTTGTGAAAGCCTGGATTGGCCGCTATATGAAGGGTACTCTTATTATCACAATACAGGACTATGC TTACTTGAGGTTAATTTTGAAGATCCTGAATCAAATATGTGAGCTATTACAACTCACATA
CDS sequence (LotjaGi4g1v0372500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAGTACATGGTTACTCTCTCTTCCAATTCTTTTCTGTGATCTTTCTGATCACATCAGCCAATGGATTCTCAAT CAAGGAAGCAACTGTGCATGATCTCCAACTTGCTTTCAAGAGAAACCAATTAACCTCTAAGCAACTTGTTGAGTTCTATC TCAAACAAATACAAATCCAGAACCCAGTTCTCAAAGGGGTGTTGGAGGTGAATCCAGATGCAGTAGCAGAAGCAGAAAGA GCTGACAAGGAGAGAAAAAAGGCTAAGGAAACAGGGTATCTGCTTTCAGGATTACATGGAATACCAATTTTGGTGAAGGA TAACATTGCAAGTAAGGATAAGCTTAACACCACTGCAGGCTCTTATGCTCTGCTTGGCTCTGTGGTGCCTAGAGATGCTG GTGTTGTTGCAAGGTTAAGGAAAGCTGGGGCTATCATATTAGGAAAGGCCAGTTTGAGTGAGTGGTCTTATTTCAGATCC AATGGAGCACCCAGCGGTTGGAGCGCCAGAGGTGGACAAGGAAAGAATCCATATACATTGGGTGATCCATGTGGGTCTAG TAGCGGATCAGCAATATCAGTAGCAGCAAATTTGGTAACAGTTTCTCTTGGTACTGAGACTGACGGCTCCATTTTATGCC CTTCAAATTCCAACTCAGTTGTGGGAATCAAACCAACAGTTGGTCTCACTAGCAGATCAGGGGTAGTTCCAATCAGCCCA AGACAAGACACAGTTGGACCAATTTGCAGGACAGTATCAGATGCTGCTCTTGTTCTTGAAACTATTGCAGGCATTGATGC TTTTGATAAGGAAACAATTGAAGCATCAAAGTATATCCCAAAAGGTGGCTATACTCAATACCTGAAGAAAGATGGACTAA GGGGAAAGAGATTAGGAATAGTTAGGTCATACTATGATTTTGGAGATGATACCTTTCTCGATGAAACTTTTAAGCTACAC CTAAAAACATTAAGGCAAAGAGGTGCAGTTTTGGTTGACCATTTGAAGATAGATAACATTGATGAAATATTCAGTGATTC AAGTGAAAGTATTGCTTTGGATTTTGAATTCAAGTTATCCTTGAATGCATACTTGAAAGACTTAGTTGCTTCCCCGGTTC GAAGCTTGGCTGATGTAATAGCCTACAACAAGAAACACCCAAAACTGGAGAAACTTGATGAGTATGGTCAAGATGTCATG CTGCAAGCTGAAAAGACAAATGGAATTGGGAAAGTACTGGAGCAAGCATTGTTAAACATGACAAGATTGTCACAAAATGG ATTTGAGAAACTAATGAAAAGAAACAAACTTGATGCTGTGGTGATACCTTCTTATAGCTTTAGTAACATCCTTGCTATTG GAGGTTACCCTGGAGTGATTGTTCCTGCTGGATATGAAAAGGGTGTGCCATTTGGAATTTGTTTTGGAGGTTTGAAAGGC TCAGAACCAAAACTGATAGAAATTGCCTATTCCTTTGAGCAAGCAACTATGATCAGGAAGCCTCCTCCACTTAGAAAGTT AAAGGTTTAA
Protein sequence (LotjaGi4g1v0372500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVHGYSLFQFFSVIFLITSANGFSIKEATVHDLQLAFKRNQLTSKQLVEFYLKQIQIQNPVLKGVLEVNPDAVAEAER ADKERKKAKETGYLLSGLHGIPILVKDNIASKDKLNTTAGSYALLGSVVPRDAGVVARLRKAGAIILGKASLSEWSYFRS NGAPSGWSARGGQGKNPYTLGDPCGSSSGSAISVAANLVTVSLGTETDGSILCPSNSNSVVGIKPTVGLTSRSGVVPISP RQDTVGPICRTVSDAALVLETIAGIDAFDKETIEASKYIPKGGYTQYLKKDGLRGKRLGIVRSYYDFGDDTFLDETFKLH LKTLRQRGAVLVDHLKIDNIDEIFSDSSESIALDFEFKLSLNAYLKDLVASPVRSLADVIAYNKKHPKLEKLDEYGQDVM LQAEKTNGIGKVLEQALLNMTRLSQNGFEKLMKRNKLDAVVIPSYSFSNILAIGGYPGVIVPAGYEKGVPFGICFGGLKG SEPKLIEIAYSFEQATMIRKPPPLRKLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 13 | 507 | 495 | 1.3E-286 | – | |
| PANTHER | 13 | 507 | 495 | 1.3E-286 | – | |
| Gene3D | 14 | 504 | 491 | 3.9E-170 | ||
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 509 | 485 | - | – | |
| SUPERFAMILY | 26 | 504 | 479 | 7.33E-96 | ||
| Pfam | 49 | 444 | 396 | 2.2E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0372500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…