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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0372600 |
| Transcript ID | LotjaGi4g1v0372600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl transferase type-2 subunit beta; TAIR: AT5G12210.1 RAB geranylgeranyl transferase beta subunit 1; Swiss-Prot: sp|Q84J75|PGTB1_ARATH Geranylgeranyl transferase type-2 subunit beta 1; TrEMBL-Plants: tr|A0A0B2SUM0|A0A0B2SUM0_GLYSO Geranylgeranyl transferase type-2 subunit beta; Found in the gene: LotjaGi4g1v0372600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75256736..75260206) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTGGTGTACATAGTTTACTTGCAAGATGGGAGAGCTGGTTTCTGAGAAACATGTTCGATATATATTATCTGTTGAA AAGGTACATTCTTTCGGAGAAGATAAAGAAAAAGCTCCACTTTTATGCTTAGATAGGAAGTTGGGTGTCTTCAGTTTCTT TTTTCATGTTCATTTCCTTTGGTTTCCAGAGGAAAGATAATTTTGAATCGGTGGTGATGGAGCATCTGAGAATGAATGGG GCATACTGGGGATTGACTGCTCTGGATCTGCTGGGGAAGCTGCACACTGTGGATGTTGATGAGGTTGTTTCATGGGTGAT GAGTTGTCAGGATGAGTCAGGTTGTTTTTTTTTCACTATGAGAACTAGAAATTAATTTAGACATTAGTTACTGAAGACAA AAATTTTTCTTATATTTGTTGTTATAAAGGGGGATTTGCTGGAAATGTTGGACATGACCCACACATCTTGTATACGCTTA GCGCTGTGCAGGTGTTGGCTCTCTTTGATAAGCTGGATGCTATTGATGTAGATAGGGTGACAAATTGTATCCTTTAACAC ACATATTGGCTGACTTTGAAGTTTCTCTAATCTTCTCACACAAGTATTGTATGATACAAGAGAAGCTTTGTTCTTTTTTA TCGTTCTTTTCAAATGCTAGCAACACACTCTCTAACACATTATTTCCTGTACACTTCTATTTTGTTGAAATTCATGTAGG GTTCATTAAATATGAGGATCTCACTCCCAATTTGATTGGCCTCACGCTCATTTTGGTAGGATTCACATGAATTTCAACCA ACAGAGAGTATTTGTTAAATAGTGTGTTGTTAGCATATCGGGAAGTGTAACGCTAGCTGGCCATCATACTTAATTACTTA CTCTGATGTGCTTAAAAGTCTGTTTGTTGTGAATTTTGATTAGTTACCAAAATTATAATAGTGAAGTTTTATAAACTATA GAGTATACCAGATCTTGTGTTTCTTAATAGTTATGTCAGATATTGTCAGCCTCCAAAATGAAGATGGGTCTTTTTCAGGG GATACGTGGGGTGAAGTTGATACACGGTATGTTTCTTAATATCTTTTTTTCATTATTGAGCATGCATGAGTTTATGTGTT TTTGGCTAAAATTCACTGACTTCTTTCTTAGGTTTTCATATATTGCTATTTGTTGTCTATCGATATTACGTCGCTTGGAT AAAATCAATGTGGAGAAGGCTGTGAAGTACTTTATAAGTTGCAAAAACATGGATGGTGGTTTTGGTTGCACACCTGGTGG AGAATCTCATGCTGGACAAAGTACGTGATATATTATTCATGACATTTACATCAATAATACTTTCGCTATGTTACTAAATG TGTCTGCTTTTGACTTTTTTGTGTGCTCGAAATTTACCCCATTTCAATTCTGTATTTATACTAGTTTAAATCAAGCCTAC GGTGAACTTGTTAACTATATCAAAGCCTTTATTGAAGGTAGTTGATCGATTGTATTGTATTTTGTGTTCAAGGAATGGAT ATAGGACTTCTTTTTTTATCAGTGAATGCTTGATTCCATAAGTCTGCTTTGATTTTATGTTTTTTCTGAATTACAAATGA AAGAACGAAATGAGCTGTAGACTTGTAGAATTGATGCATCAGTGAAAGATATTGTTTTTCCTATTGTCAGTTTTCTGTTG TGTGGGGGCGCTTGCTATAACTGGGTCACTAGATCTTGTTGACAAGGACCTACTTGGTTGGTGGTTATGCGAGCGACAAG TTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAGCTCCCTGATGTGAGTAGTTCTTTTCAAACTTAGATTAGTGCTTTA AATGCTCTTATTGTTTTTCTCATTTTCTTTTACTAGCTTTTAGATCATCTCAGGTGTGCTACTCATGGTGGGTTCTTTCT AGCCTGATCATGATTGATAGGGTTCATTGGATCAGTAAGGAGAAACTTATAAAGTTCATCTTAGACTGCCAGGTTAGTTG TTTGAATTCCTCTTCTGTGTTTATACATCAGCATGTTCTTATTTCTTCTTTTCAGGTATTAACTGTGCTTAGATTAGTAT TTCTCAAAGGAAAATCCTAAATGGTACGAGTACGAAAGTCAAGAAATACATGTGGCTTTCAGTGATTTGTCTTCAATTTG TTTTTTCTATAAATAACCCAACTTGATTTCTGTCAAAGTAAAATTTAATTGCTAGAAAGCATTATTCTTACAAATCGTAA TCTGATCTTTCGTACGAAATAGCAAAGCTCTTTCTCAAATATCGTTTATGTTGAATTTATAAGGACACGGAGAATGGTGG AATTTCAGATAGGCCAGACGATGCTGTGGATGTCTTTCATACTTACTTCGGGGTGGCTGGTATGAGTAATTTTTGCCTTT TTAGTTTTTTCCATTTGTTCTTTATTTGGTTGTGCTAAAGTCTTGTAATCTAGGGTTCTTAGGGATGGAAGCAAGGCGTG GCATCCCGCCTTCAAAATATTTTTATTGTTTATGATAAATTTTATGATACTAGAGTTGCCTCCTTATTTTTACCATTAGT CCTTTACTATTAATATGACTTGTATATTGGTTGTGAATCAATCAACTATGACTTGGCCCAAGGACAAAATATCACTTACC AATGCAAACACTACAATCAGAAACACATACACAAGAAAAAAAACTAATCCTAATTGGAAAGAATAAATGTAGCAACGAGA AACACCACAATCGTATTTCTACATATCTGATTTTAATCCCATTAAGGTAAATAAGTTTCATGTTAAAAAAATATTAAACT ATCATGTGTGTGCACTTTAGTTGGATAAACATATAGTGCATTCTAGTTTTTGACAGCTTCATTGAGGATTTGAGGTAGAG TTTGACTCTTTTTTTCACTTTGTCCCCTTGATATGTTGTTTTTAGGCATTTCTTTTTAACTTTCCTTTCCCTTTCTCATG CACTGAGATTACCCTGATATGGGAATGATTGCGAGTTGTGGCATTCAGTCATCCAGTCAAACAAGAGTGACAAAAAAGCC ACTCTTCATGAATTCTAGTGAATTTCTGTTGCTAGCTTGATGTTCAGATAAAGATCAATGATAATAGTTCAACATGCTTA TAATGATACATTTGAACTGGATATGCAACATCTTATTACTTTAGTTGAAGGTTTAAGGTGAGGTTATACGTGAATTATAA AACTTGATGTTATTCAATGCTTCATTTTTATATAGCTTTCCCAAAGTAAAACGGAATGTAACTTAAGATATCCATATTTA TCCTTTACTGATTATGCAGCTGCTTTTATTAAACTCTTATATACTTTCTGCACAATAAAACTAACGATGCTGAAGCTGTT TTGTTTGTTCTTGCAGGTCTTTCACTTCTTGAATATCCAGGATTGAAACCGATAGATCCAGCTTATGCTTTACCTGTTGA TGTAGTAAATCGAATCTTCTTTAGTAAGTAA
CDS sequence (LotjaGi4g1v0372600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGCTGGTTTCTGAGAAACATGTTCGATATATATTATCTGTTGAAAAGAGGAAAGATAATTTTGAATCGGTGGT GATGGAGCATCTGAGAATGAATGGGGCATACTGGGGATTGACTGCTCTGGATCTGCTGGGGAAGCTGCACACTGTGGATG TTGATGAGGTTGTTTCATGGGTGATGAGTTGTCAGGATGAGTCAGGGGGATTTGCTGGAAATGTTGGACATGACCCACAC ATCTTGTATACGCTTAGCGCTGTGCAGGTGTTGGCTCTCTTTGATAAGCTGGATGCTATTGATGTAGATAGGGTGACAAA TTATATTGTCAGCCTCCAAAATGAAGATGGGTCTTTTTCAGGGGATACGTGGGGTGAAGTTGATACACGGTTTTCATATA TTGCTATTTGTTGTCTATCGATATTACGTCGCTTGGATAAAATCAATGTGGAGAAGGCTGTGAAGTACTTTATAAGTTGC AAAAACATGGATGGTGGTTTTGGTTGCACACCTGGTGGAGAATCTCATGCTGGACAAATTTTCTGTTGTGTGGGGGCGCT TGCTATAACTGGGTCACTAGATCTTGTTGACAAGGACCTACTTGGTTGGTGGTTATGCGAGCGACAAGTTAAATCTGGAG GTCTGAATGGGCGTCCTGAGAAGCTCCCTGATGTGTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGG GTTCATTGGATCAGTAAGGAGAAACTTATAAAGTTCATCTTAGACTGCCAGGACACGGAGAATGGTGGAATTTCAGATAG GCCAGACGATGCTGTGGATGTCTTTCATACTTACTTCGGGGTGGCTGGTCTTTCACTTCTTGAATATCCAGGATTGAAAC CGATAGATCCAGCTTATGCTTTACCTGTTGATGTAGTAAATCGAATCTTCTTTAGTAAGTAA
Protein sequence (LotjaGi4g1v0372600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSWVMSCQDESGGFAGNVGHDPH ILYTLSAVQVLALFDKLDAIDVDRVTNYIVSLQNEDGSFSGDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYFISC KNMDGGFGCTPGGESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR VHWISKEKLIKFILDCQDTENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 312 | 312 | 1.9E-196 | – | |
| Gene3D | 1 | 312 | 312 | 3.2E-126 | – | |
| PANTHER | 1 | 312 | 312 | 1.9E-196 | – | |
| SUPERFAMILY | 3 | 309 | 307 | 1.32E-113 | ||
| CDD | 4 | 287 | 284 | 0.0 | ||
| Pfam | 53 | 93 | 41 | 4.2E-11 | ||
| Pfam | 100 | 142 | 43 | 3.4E-13 | ||
| Pfam | 148 | 191 | 44 | 1.6E-12 | ||
| Pfam | 197 | 239 | 43 | 3.9E-12 | ||
| Pfam | 245 | 287 | 43 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Rab geranylgeranyltransferase activity | Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family. | ||
| Biological process | Protein geranylgeranylation | The covalent attachment of a geranylgeranyl group to a protein. |
Expression pattern of LotjaGi4g1v0372600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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