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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0373000 |
| Transcript ID | LotjaGi4g1v0373000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related protein 2/3 complex subunit 4; TAIR: AT4G14147.1 binding protein; Swiss-Prot: sp|F4JUL9|ARPC4_ARATH Actin-related protein 2/3 complex subunit 4; TrEMBL-Plants: tr|G7LHV2|G7LHV2_MEDTR Actin-related protein 2/3 complex subunit 4; Found in the gene: LotjaGi4g1v0373000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75290807..75294564) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGACTTAATTCAAAATGAGACATTAAATACGAGATATGACTAAAACTGATTCATTCTCTTTCTTTCCTGTGATTCAT TCATTCACTTACACTCTACTTCTACTTTTCCATCACTGATTTGATTTCCAAACAAAAACTCTCTCTCTCTCTGTTCATCA GATTCAGAGTCAATCTCATGGTACGAACCCTTCTCTCTCTCTCTCTGTCTCTGATTCTTCAACAATTTCAATTCACCATT TTCGGAAATCGCATTTCAGGGCAGCAACACCTTGCGGTTATACTTGACCTGCATTCGCAACACCCTCGAAGCCGCAATGT GCCTCCAGAATTTCCCCTGTCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGTATGAATCATTCAATTCA ATTCAATCTCTCTTCGTATCCAATTAAACCTAATTCATAGAAAAATTTGAATGATTACATGAATTTTGATATGTTCATTC AGATTGAAATTGAAAAATTAGATTACGTTTGATGCAAATTCTGTTTACTTCTGAATCTGAAACATCTTGCAAATTGCAAT ATCTTCATAGCATTAGATCAATCAGCTGAACTTACAGTTGCTAATCAAGTTGTTGATTGTGCTTGTTTGTGTGCAGGACC AGCCCTGAACTACTGCTCAATCCTGTAAGATCAATCTTACTATTTCATAGACTCTTTTTTTCATTTTAACTACTTAGTTA ATAATTGCTGGTAATTTTTAGAGTTTCAAAAATTTAAGTATGAAAATGACATCTTTGCTTGCGAGTTTGCGTTGTTTGTG ATTTTTTCTTTATTTGGGATGATGACGAGAGCTATTTAATTATCGAAAAGGAGGAACATGAAAGATGTTTTCTGCTGCAC TAATTATAAAGATTTTTCGGATCTATGCTCGTTTGTTATCATCGCTTGCACTAAATATAAAGTTTTTTCTAATCTTCAGC CTAAATAGGAATTTCCTTTGATTTATGCATGGTTTCATTAGGATTAACTTGACTTTATAGAGGTGCCGATTGTGCCTTGA TAAGACCTTTTTTTACTGTCTTTGTAAATGGTGAAGGCTTTATTACCATTAAAGCTGATTCCTAGAGGTGGTAAATTATT TTATGTATTTATGCTTATAGAGAAATGTGTGCAAATATGTTGTTACAGGTTTTGATATGTCGAAATGAGGCTGAAAAGTG CTTAATAGAAACATCTATCAATTCATTGAGGATAAGTCTCAAGGTAAACCTTTTTTTTTGTGAAATTATGTTTTTATTAT GTTCTGTTGGAGTTTTCCGAAAATAGTTTCTACCCCTGATGATATGATGATTAGTTCCCTGAGTAGGCTTATTAAATTTG TCGTGTTTCTTTAAGATATGAACTGTATGTTCAGGATTTGGACATTTTTCATGTACTTTGGGTTTTTCTTTAGAGCTCCT TTTTATTGTAGGTTTCCTTCATTTAGTTTGATGTTATAAAACTTCATATTGCTTTACTGTGCAGTCTGTACCTTGTAAAA GTATTGAGATGTGTTCAACTAAATGAATTGGAATAACTATGCAGAGAATGGATAGGTAAAGAAGATGAGTTGAATGTGGT AAAAATAACAGAAAAAGTAATAATTATATACCAATATTCATTATAATTTAGCCATAATTCCTAATTCTATTTTATTTCAT CTTGTCCAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGA GGCTTTCCAAGTATTGAGGAGAAAGCCTGTGCAGGTTTATATCTAATGGCCATTAAACTAGGGTTGTTTATTTTTATTGT TATTTTACTTAACAACGGTGCCTGGTGATAATTTTCTAGTTAAATAATGTATGCTTAGTTATTGGTAGTGGACATCTATT GGTGATAGACTGATAGGTAAAAAGTCTGCGTGAAAGAGGGATAAATTTATGTGAAGTTTCATTGAATGTCTTCATCATAA AAATACTTGTTCAAGTGCCCTCATAGATATTGTGTGTTGCATGTTTCTGAGGTTATGCTTGGATTGATGCCTTGTCATTA TTACCAAGGGTAGGCAAAAGCATACAACATACATTCAAGTCTCTTCTTGTTTATTTTCTAATTAACGCCTGATTGAAATG GTCAATGAAAAATTGAAAATCCTCTTACACGTGGGTAATCCTAGCATTTAATTTATTGTTTCCCCTTCAACTCTGGCATC CATATATGTACAGCATATACTGGATGGTGTTTAAAATAATCGATTTATTTAGGCCTTCCATGCAATGTTTCTATTCTCAT GGGGGGGGGCAATTACTACAGCAAGTGACAGCCATGCAGATGCTGTTACTACTTTATTCTGTACATGTTGTTAGACTTGA TATTTTTTTAATTCACTTGGTAGGGGACAAAATTTCTTATTATACTTCAACTGTTCTTGGTAACTTTTCAAAAAGACCGC AAATGTCATCTTTTTGTTATTTGACTTATTTCTTTTGTCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGT GAGGACATGCAGAAGCAGAAACTCATAGATTTTATTGTGCAATTTATGGAGGTAAGACTTTTATTGACACTATAACTTAG TTTTGCATTTCATTTTTTGGTATAAACAGTGACATTCTATGAAGTGACTATCAAATTCGAAACTCTGAAATGTTATTTAC CTGGATGTTCTAAGTAGTTGAGTAATTATTAACACTTACCATTTAGAAATCATCAGCATGAGGTTCTATAGTTGAGTTAT TCTGGAATCTGGAGGCATGCCCGCTACACTTTATAATTGCCTTGAAATATTTACTGACAACATGAATTAGAGCAAGATGT TAATTTTTATTGTTTAGTTCTTCTATTACTTTCCCAACATGTCCTTTGTGTAGGAAAAATTGTCCATATATTTCTTTTCT TTTTCTACCGTCCTTGTAATTCTGTTGACATCTAGAACTAGAAGAATACTGAAGACTTTCAAATTACAGGACATTGATAA GGAGATTAGCGAGCTCAAAATGTCGGTGAACACACGGGGGAGGCTGGTGGCTACAGAGTTTCTGAAGCAGTTTATCTGAT GCTTGTTAGAATTAGAGCTACTAAATCCGTGTAAATTGTATTATTGCAGATTTAGTTCCACCTTCAAAAGTGCTAATGCT TGTGCTTTTATGATATTTAGCTGCAGCGCAGGGTAATTTTTTTTTAAAGTTTAATACGATATCTGAAGAAAAATATGTAA AACATACAGGCCACACGAGGAAAAGAGGCTACTAAAAAAAGTAATTAATGAAAAGATTAAAAAAAAAATCACAACAAATG ATCACAGTCCTAGGTAGGTTCTATGCCTTTTAGTCTCAAATTTAAATTATAATGTGAAATCTTTTCACAAGCACAGCGAT GCTTTAAATGGTGTTGAAGACATCTTGCCAGAACAGAACATAGAACATGAGTGTTCTCCTTTCAAACATCCACTAATTCA TATCAATCTTCGATTTAATTACAAACTAGTGTAACCCTAAAAATTATCAAATGATCGATAAAAGCATGAAATGCATAGGA AAATACTGAACAATGAAAGAAAACCAACTCCATCAGTGAAAGAGTATTTTGAACAAACTACATAATAAATTACAACATCC TAAATACGCTTACAAGAGGGAGGAAGGAAAAGATGAAACTGTAGGGAAAGAGACGAATCCTTTCAACCTCACTCTTGG
CDS sequence (LotjaGi4g1v0373000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGCAACACCTTGCGGTTATACTTGACCTGCATTCGCAACACCCTCGAAGCCGCAATGTGCCTCCAGAATTTCCC CTGTCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGACCAGCCCTGAACTACTGCTCAATCCTGTTTTGA TATGTCGAAATGAGGCTGAAAAGTGCTTAATAGAAACATCTATCAATTCATTGAGGATAAGTCTCAAGGTGAAGCAGGCT GATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGAGGCTTTCCAAGTATTGAGGAG AAAGCCTGTGCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGTGAGGACATGCAGAAGCAGAAACTCATAG ATTTTATTGTGCAATTTATGGAGGACATTGATAAGGAGATTAGCGAGCTCAAAATGTCGGTGAACACACGGGGGAGGCTG GTGGCTACAGAGTTTCTGAAGCAGTTTATCTGA
Protein sequence (LotjaGi4g1v0373000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQA DELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRL VATEFLKQFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 170 | 169 | 1.0E-87 | ||
| Gene3D | 2 | 169 | 168 | 4.3E-85 | ||
| Pfam | 3 | 168 | 166 | 7.9E-79 | ||
| PANTHER | 3 | 169 | 167 | 1.1E-94 | ||
| SUPERFAMILY | 4 | 169 | 166 | 1.22E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Arp2/3 protein complex | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament polymerization | Assembly of actin filaments by the addition of actin monomers to a filament. | ||
| Biological process | Regulation of actin filament polymerization | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. | ||
| Biological process | Arp2/3 complex-mediated actin nucleation | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
Expression pattern of LotjaGi4g1v0373000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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