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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0373000 |
Transcript ID | LotjaGi4g1v0373000.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Actin-related protein 2/3 complex subunit 4; TAIR: AT4G14147.1 binding protein; Swiss-Prot: sp|F4JUL9|ARPC4_ARATH Actin-related protein 2/3 complex subunit 4; TrEMBL-Plants: tr|A0A151TL49|A0A151TL49_CAJCA Actin-related protein 2/3 complex subunit 4; Found in the gene: LotjaGi4g1v0373000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75291446..75294305) extracted from Lotus japonicus Gifu genome v1.2.
GGCAGCAACACCTTGCGGTTATACTTGACCTGCATTCGCAACACCCTCGAAGCCGCAATGTGCCTCCAGAATTTCCCCTG TCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGTATGAATCATTCAATTCAATTCAATCTCTCTTCGTAT CCAATTAAACCTAATTCATAGAAAAATTTGAATGATTACATGAATTTTGATATGTTCATTCAGATTGAAATTGAAAAATT AGATTACGTTTGATGCAAATTCTGTTTACTTCTGAATCTGAAACATCTTGCAAATTGCAATATCTTCATAGCATTAGATC AATCAGCTGAACTTACAGTTGCTAATCAAGTTGTTGATTGTGCTTGTTTGTGTGCAGGACCAGCCCTGAACTACTGCTCA ATCCTGTAAGATCAATCTTACTATTTCATAGACTCTTTTTTTCATTTTAACTACTTAGTTAATAATTGCTGGTAATTTTT AGAGTTTCAAAAATTTAAGTATGAAAATGACATCTTTGCTTGCGAGTTTGCGTTGTTTGTGATTTTTTCTTTATTTGGGA TGATGACGAGAGCTATTTAATTATCGAAAAGGAGGAACATGAAAGATGTTTTCTGCTGCACTAATTATAAAGATTTTTCG GATCTATGCTCGTTTGTTATCATCGCTTGCACTAAATATAAAGTTTTTTCTAATCTTCAGCCTAAATAGGAATTTCCTTT GATTTATGCATGGTTTCATTAGGATTAACTTGACTTTATAGAGGTGCCGATTGTGCCTTGATAAGACCTTTTTTTACTGT CTTTGTAAATGGTGAAGGCTTTATTACCATTAAAGCTGATTCCTAGAGGTGGTAAATTATTTTATGTATTTATGCTTATA GAGAAATGTGTGCAAATATGTTGTTACAGGTTTTGATATGTCGAAATGAGGCTGAAAAGTGCTTAATAGAAACATCTATC AATTCATTGAGGATAAGTCTCAAGGTAAACCTTTTTTTTTGTGAAATTATGTTTTTATTATGTTCTGTTGGAGTTTTCCG AAAATAGTTTCTACCCCTGATGATATGATGATTAGTTCCCTGAGTAGGCTTATTAAATTTGTCGTGTTTCTTTAAGATAT GAACTGTATGTTCAGGATTTGGACATTTTTCATGTACTTTGGGTTTTTCTTTAGAGCTCCTTTTTATTGTAGGTTTCCTT CATTTAGTTTGATGTTATAAAACTTCATATTGCTTTACTGTGCAGTCTGTACCTTGTAAAAGTATTGAGATGTGTTCAAC TAAATGAATTGGAATAACTATGCAGAGAATGGATAGGTAAAGAAGATGAGTTGAATGTGGTAAAAATAACAGAAAAAGTA ATAATTATATACCAATATTCATTATAATTTAGCCATAATTCCTAATTCTATTTTATTTCATCTTGTCCAGGTGAAGCAGG CTGATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGAGGCTTTCCAAGTATTGAGG AGAAAGCCTGTGCAGGTTTATATCTAATGGCCATTAAACTAGGGTTGTTTATTTTTATTGTTATTTTACTTAACAACGGT GCCTGGTGATAATTTTCTAGTTAAATAATGTATGCTTAGTTATTGGTAGTGGACATCTATTGGTGATAGACTGATAGGTA AAAAGTCTGCGTGAAAGAGGGATAAATTTATGTGAAGTTTCATTGAATGTCTTCATCATAAAAATACTTGTTCAAGTGCC CTCATAGATATTGTGTGTTGCATGTTTCTGAGGTTATGCTTGGATTGATGCCTTGTCATTATTACCAAGGGTAGGCAAAA GCATACAACATACATTCAAGTCTCTTCTTGTTTATTTTCTAATTAACGCCTGATTGAAATGGTCAATGAAAAATTGAAAA TCCTCTTACACGTGGGTAATCCTAGCATTTAATTTATTGTTTCCCCTTCAACTCTGGCATCCATATATGTACAGCATATA CTGGATGGTGTTTAAAATAATCGATTTATTTAGGCCTTCCATGCAATGTTTCTATTCTCATGGGGGGGGGCAATTACTAC AGCAAGTGACAGCCATGCAGATGCTGTTACTACTTTATTCTGTACATGTTGTTAGACTTGATATTTTTTTAATTCACTTG GTAGGGGACAAAATTTCTTATTATACTTCAACTGTTCTTGGTAACTTTTCAAAAAGACCGCAAATGTCATCTTTTTGTTA TTTGACTTATTTCTTTTGTCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGTGAGGACATGCAGAAGCAGA AACTCATAGATTTTATTGTGCAATTTATGGAGGTAAGACTTTTATTGACACTATAACTTAGTTTTGCATTTCATTTTTTG GTATAAACAGTGACATTCTATGAAGTGACTATCAAATTCGAAACTCTGAAATGTTATTTACCTGGATGTTCTAAGTAGTT GAGTAATTATTAACACTTACCATTTAGAAATCATCAGCATGAGGTTCTATAGTTGAGTTATTCTGGAATCTGGAGGCATG CCCGCTACACTTTATAATTGCCTTGAAATATTTACTGACAACATGAATTAGAGCAAGATGTTAATTTTTATTGTTTAGTT CTTCTATTACTTTCCCAACATGTCCTTTGTGTAGGAAAAATTGTCCATATATTTCTTTTCTTTTTCTACCGTCCTTGTAA TTCTGTTGACATCTAGAACTAGAAGAATACTGAAGACTTTCAAATTACAGGACATTGATAAGGAGATTAGCGAGCTCAAA ATGTCGGTGAACACACGGGGGAGGCTGGTGGCTACAGAGTTTCTGAAGCAGTTTATCTGA
CDS sequence (LotjaGi4g1v0373000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCCTCCAGAATTTCCCCTGTCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGACCAGCCCTGAACT ACTGCTCAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAGTGCTTAATAGAAACATCTATCAATTCATTGAGGATAA GTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGAG GCTTTCCAAGTATTGAGGAGAAAGCCTGTGCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGTGAGGACAT GCAGAAGCAGAAACTCATAGATTTTATTGTGCAATTTATGGAGTCTAGAACTAGAAGAATACTGAAGACTTTCAAATTAC AGGACATTGATAAGGAGATTAGCGAGCTCAAAATGTCGGTGAACACACGGGGGAGGCTGGTGGCTACAGAGTTTCTGAAG CAGTTTATCTGA
Protein sequence (LotjaGi4g1v0373000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAE AFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMESRTRRILKTFKLQDIDKEISELKMSVNTRGRLVATEFLK QFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 163 | 163 | 9.0E-73 | ||
Pfam | 1 | 161 | 161 | 3.8E-64 | ||
PANTHER | 1 | 162 | 162 | 6.5E-81 | ||
Gene3D | 1 | 162 | 162 | 2.3E-70 | ||
SUPERFAMILY | 1 | 162 | 162 | 4.71E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Arp2/3 protein complex | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. | ||
Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
Biological process | Actin filament polymerization | Assembly of actin filaments by the addition of actin monomers to a filament. | ||
Biological process | Regulation of actin filament polymerization | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. | ||
Biological process | Arp2/3 complex-mediated actin nucleation | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
Expression pattern of LotjaGi4g1v0373000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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