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LotjaGi4g1v0373000.3

Overview

Field Value
Gene ID LotjaGi4g1v0373000
Transcript ID LotjaGi4g1v0373000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Actin-related protein 2/3 complex subunit 4; TAIR: AT4G14147.1 binding protein; Swiss-Prot: sp|F4JUL9|ARPC4_ARATH Actin-related protein 2/3 complex subunit 4; TrEMBL-Plants: tr|A0A061EK66|A0A061EK66_THECC Actin-related protein 2/3 complex subunit 4; Found in the gene: LotjaGi4g1v0373000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:75291446..75294305) extracted from Lotus japonicus Gifu genome v1.2.

GGCAGCAACACCTTGCGGTTATACTTGACCTGCATTCGCAACACCCTCGAAGCCGCAATGTGCCTCCAGAATTTCCCCTG TCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGTATGAATCATTCAATTCAATTCAATCTCTCTTCGTAT CCAATTAAACCTAATTCATAGAAAAATTTGAATGATTACATGAATTTTGATATGTTCATTCAGATTGAAATTGAAAAATT AGATTACGTTTGATGCAAATTCTGTTTACTTCTGAATCTGAAACATCTTGCAAATTGCAATATCTTCATAGCATTAGATC AATCAGCTGAACTTACAGTTGCTAATCAAGTTGTTGATTGTGCTTGTTTGTGTGCAGGACCAGCCCTGAACTACTGCTCA ATCCTGTAAGATCAATCTTACTATTTCATAGACTCTTTTTTTCATTTTAACTACTTAGTTAATAATTGCTGGTAATTTTT AGAGTTTCAAAAATTTAAGTATGAAAATGACATCTTTGCTTGCGAGTTTGCGTTGTTTGTGATTTTTTCTTTATTTGGGA TGATGACGAGAGCTATTTAATTATCGAAAAGGAGGAACATGAAAGATGTTTTCTGCTGCACTAATTATAAAGATTTTTCG GATCTATGCTCGTTTGTTATCATCGCTTGCACTAAATATAAAGTTTTTTCTAATCTTCAGCCTAAATAGGAATTTCCTTT GATTTATGCATGGTTTCATTAGGATTAACTTGACTTTATAGAGGTGCCGATTGTGCCTTGATAAGACCTTTTTTTACTGT CTTTGTAAATGGTGAAGGCTTTATTACCATTAAAGCTGATTCCTAGAGGTGGTAAATTATTTTATGTATTTATGCTTATA GAGAAATGTGTGCAAATATGTTGTTACAGGTTTTGATATGTCGAAATGAGGCTGAAAAGTGCTTAATAGAAACATCTATC AATTCATTGAGGATAAGTCTCAAGGTAAACCTTTTTTTTTGTGAAATTATGTTTTTATTATGTTCTGTTGGAGTTTTCCG AAAATAGTTTCTACCCCTGATGATATGATGATTAGTTCCCTGAGTAGGCTTATTAAATTTGTCGTGTTTCTTTAAGATAT GAACTGTATGTTCAGGATTTGGACATTTTTCATGTACTTTGGGTTTTTCTTTAGAGCTCCTTTTTATTGTAGGTTTCCTT CATTTAGTTTGATGTTATAAAACTTCATATTGCTTTACTGTGCAGTCTGTACCTTGTAAAAGTATTGAGATGTGTTCAAC TAAATGAATTGGAATAACTATGCAGAGAATGGATAGGTAAAGAAGATGAGTTGAATGTGGTAAAAATAACAGAAAAAGTA ATAATTATATACCAATATTCATTATAATTTAGCCATAATTCCTAATTCTATTTTATTTCATCTTGTCCAGGTGAAGCAGG CTGATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGAGGCTTTCCAAGTATTGAGG AGAAAGCCTGTGCAGGTTTATATCTAATGGCCATTAAACTAGGGTTGTTTATTTTTATTGTTATTTTACTTAACAACGGT GCCTGGTGATAATTTTCTAGTTAAATAATGTATGCTTAGTTATTGGTAGTGGACATCTATTGGTGATAGACTGATAGGTA AAAAGTCTGCGTGAAAGAGGGATAAATTTATGTGAAGTTTCATTGAATGTCTTCATCATAAAAATACTTGTTCAAGTGCC CTCATAGATATTGTGTGTTGCATGTTTCTGAGGTTATGCTTGGATTGATGCCTTGTCATTATTACCAAGGGTAGGCAAAA GCATACAACATACATTCAAGTCTCTTCTTGTTTATTTTCTAATTAACGCCTGATTGAAATGGTCAATGAAAAATTGAAAA TCCTCTTACACGTGGGTAATCCTAGCATTTAATTTATTGTTTCCCCTTCAACTCTGGCATCCATATATGTACAGCATATA CTGGATGGTGTTTAAAATAATCGATTTATTTAGGCCTTCCATGCAATGTTTCTATTCTCATGGGGGGGGGCAATTACTAC AGCAAGTGACAGCCATGCAGATGCTGTTACTACTTTATTCTGTACATGTTGTTAGACTTGATATTTTTTTAATTCACTTG GTAGGGGACAAAATTTCTTATTATACTTCAACTGTTCTTGGTAACTTTTCAAAAAGACCGCAAATGTCATCTTTTTGTTA TTTGACTTATTTCTTTTGTCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGTGAGGACATGCAGAAGCAGA AACTCATAGATTTTATTGTGCAATTTATGGAGGTAAGACTTTTATTGACACTATAACTTAGTTTTGCATTTCATTTTTTG GTATAAACAGTGACATTCTATGAAGTGACTATCAAATTCGAAACTCTGAAATGTTATTTACCTGGATGTTCTAAGTAGTT GAGTAATTATTAACACTTACCATTTAGAAATCATCAGCATGAGGTTCTATAGTTGAGTTATTCTGGAATCTGGAGGCATG CCCGCTACACTTTATAATTGCCTTGAAATATTTACTGACAACATGAATTAGAGCAAGATGTTAATTTTTATTGTTTAGTT CTTCTATTACTTTCCCAACATGTCCTTTGTGTAGGAAAAATTGTCCATATATTTCTTTTCTTTTTCTACCGTCCTTGTAA TTCTGTTGACATCTAGAACTAGAAGAATACTGAAGACTTTCAAATTACAGGACATTGATAAGGAGATTAGCGAGCTCAAA ATGTCGGTGAACACACGGGGGAGGCTGGTGGCTACAGAGTTTCTGAAGCAGTTTATCTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0373000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGCCTCCAGAATTTCCCCTGTCAAGAAGTCGAACGGCATAACAAACCCGAAGTTGAACTCAAGACCAGCCCTGAACT ACTGCTCAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAGTGCTTAATAGAAACATCTATCAATTCATTGAGGATAA GTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATACTGACCAAGAAATTTCTGAGATTTTTGTCCATGAGAGCTGAG GCTTTCCAAGTATTGAGGAGAAAGCCTGTGCAGGGATATGATATTAGCTTCCTTATAACAAATTACCACTGTGAGGACAT GCAGAAGCAGAAACTCATAGATTTTATTGTGCAATTTATGGAGGACATTGATAAGGAGATTAGCGAGCTCAAAATGTCGG TGAACACACGGGGGAGGCTGGTGGCTACAGAGTTTCTGAAGCAGTTTATCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0373000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAE AFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF039100
1 150 150 5.1E-79
IPR008384
Pfam
PF05856
1 148 148 1.6E-70
IPR008384
PANTHER
PTHR22629
1 149 149 4.3E-85
IPR008384
SUPERFAMILY
SSF69645
1 149 149 5.49E-68
IPR034666
Gene3D
G3DSA:3.30.1460.20
1 149 149 6.5E-77
IPR034666

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005885
Cellular component Arp2/3 protein complex A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.
Subterm of
Part of
GO:0015629
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Subterm of
GO:0030041
Biological process Actin filament polymerization Assembly of actin filaments by the addition of actin monomers to a filament.
Subterm of
GO:0030833
Biological process Regulation of actin filament polymerization Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
Subterm of
Regulates
GO:0034314
Biological process Arp2/3 complex-mediated actin nucleation The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0373000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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