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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0373300 |
| Transcript ID | LotjaGi4g1v0373300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|K7L624|K7L624_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0373300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75304615..75307514) extracted from Lotus japonicus Gifu genome v1.2.
CTATGACCCTATAGCAATTTGTTACACTTGTTTGGAAATAGAAACTGAAAACAACAATTAATGACTCTCTTTCTCTCTGA CTCTCATTAATATCTTTGCAAAAATGACAATTGCTCTCCACTTGAACAAAAAATAGACTATAACAGCAACAAACATATCA ATGGTTTCTAGTTTCTAGTCATTAACTGCCCTGTGACACCAAAAGCTCTCTCCAAAAGCTCTTGTTCTTTCTTTTGTTCT TCTCCTAAGGTTCGTTTCATTTTTTTCTCCATCTTTCTCTCCATTTCTGATCTGAGGAAAGAATTTGCTTCTGCTCCCCC TTCTTGTATGGTTTTGGACATTTTGTTACACAATGTAACAGAAAAAATGTTACTTTTTTTTTCTTATTCATTTTTGTTTG TTTAATCTCATTACATAATAGATAATGTAACCAGATAGATGCTGAGACTCAAAAAATTTGTGCTATTTTTTAAAATGTTA TATGGGAATGGGGCCTTAGTTTGTGGTTTATACTATCAAGTAGGGGTTATTTTCTGTTTTTTATTCATTGTATTAGTACA TGTTTGGATGTTTGGTAAATTTGGAGAATTGATTCTGGAAGAAGCTACTCTTGTTGCAGATGAGTATGGGTTCCAGTAGT CAACCGAGCAAGAGAAAGGCCCCAACTGAAGAGGCTGGTCCTGCTGATTATGTCCACTTTTCAATCAAGGGTCAGGTATG TTTGGCTCTTCTCCATTACTTCAATTTCCCTTAGGTTTTCCCTCAGAATCCTATTTTTGTGCTTTTGTTTTATCAACTAA TAACTCTGTTTGCGTTAACAGTGTTATAGGGTGATTTCCTACTTTACAAGTTAGTCCTTCATATGTAATAAATTTTCTTA GGCTAGCTTGACAACATTAGGGATTTGTTTGTAGTGTTTTGTTCTGGTGTGTGGTTCATCACCATATGTTGTCGCTGTCG AGTTATGACCTCCACCAAAGTTGACTTACACAGTGGCCGAGTTACGACTTTCATATTTGCCGACTTACACTGTTACACAA GAATGAAGGCCATAACTTGCCACTGTGTAAGTTGGCCTTGGTGGAGGTTGTAACTTGGACACGACGTATGGTGTCAAACT GCACAGCGAAACAATAGTCTCCTAGCTCACTCTGACCTTCACTACGAGTGATGACCTGAGATACAAGGTATGTTGGCTGA AGCGCTAGGTGTTGAACCACACTCCGCAATAGTGTGTTTGGAATGCACCTTCAATACATATGAAGTGTAGCTTGTACTTT TAGTTTTTATGTTTAGATGTGAGATATGTTTATATAGTGTGTTTGAATTAGTGGTAGACACACAATCTAAAACACGGTAA CCCGAGAAGGCAGAAGCTACACCCGATAGTTTCTTCCCATAAATGATTATGAGGCTTCCCACCGCAGAAGCAAACACGCC AAATCCAATATAGGGGAGAGTGATTTCTAACCAGCAAAATATACCTTATAATGTGTCCAATTGTCCATATGCTTTTATAC TCTAGTTCTCACATTTTCTTCCCTGTTTTCTAGTTGTGTGTCATTCATTCAGTCATTCTCATTCCCTTCATTCATTCAAG TGTAGGATGGGCGTCAATTGTTCTTCAAGGTGAACAAGGAGGCCAAGTTATTTAATGCATTCAGTAGCTACTGTGAGCGA GTGAACTTGGAATATGAGACCATGCAGTTTTTACATGATGGTCAGTATGTCAAAGGGAAACGTCAAACACCAAAAATGGT TAGTTAATTTCTTTCATAACTGCAACACAAAGCTTCTTTGTTTCTGTCATTTTTGTGATTAGTCAACTTAGTTGTTTCAA TATCACTTAATTAGAGATCACTTCTTAAAGACTGTGTTCATTCATTTTTTAGAGAATTGGACTAATAAAAATTGAGTGGT TTAAAAAATAAAAATCTCTCTCACTTTTCAACTGTTCAGTGTCCATGTTTCATGCTTGAAACGGTGCATTGGTTGAAAGT TATAAATTGGTCATAGACTCATATCTAATGCCAAAGCAAATCAGAAAGGATTATTGAATATTCCTGCATTCCACTTCAAT TTATGAATTTCTTTGGCTTCTTCACATCTCATAGTAAAGACTAATTCTTGGAAATGAAATTTACCCTATTGGCTTGCTCG AATATATAGTACCTGTTTGGGAAATTGTTATCACAATTAACTATAATAGAATTGATGTTGGTAAAATTAGTTACATTAAA AGTGATTTGAAAGTGAAGTAATTTATCTTTGGATACATTTGTGAGAAAAGTGATTTTTGCAAGAGTACTATTATGAAATC AACTTGTGAAAGGTCAAAATTAAGGATTTCTAGCTTTATCCCATAATTAATTTTGGGTCTATTGTAAAATATAACATCCA AACAACCCAAAATTGATTTTGAGAGTAGAGAATCAATTCTTACACTTGTAAATGTGGAACCAAACATGCTATAACAATGT TACAGTGGTCAGGATATTTTCTAATTTTCATTTCAGGATATCTTCGTTTGTTGCTGTACATCTTAAATCGTTACTGCTTG TAAACAAGTAATGTTTTAGATCTCATTGAACTTAATAGATCTGTTCTTTTACATTGATGTTACATAACTACAGCTCAATC TGAAAAATGGTGATGAGATCGTTGCAGTGAGACACCAATCAGGAGGAGGTGTTGCATAACTTAACTTTTAACAGGGATGA TATGACTCAGTATTGTTGTTCTACTTGTTAGTTTGTTTAACTGTTATTTACATTCAGAAAAGTAAGTAAGCAAACAGTTT GTAAGTGAATTGAATGCTCAATTTGGCTCAAACTATTATCATATTAGACAAAATATCACTTTTCGCATCTCAAAATATTT CGAGTGTTAAGACTTTTAAA
CDS sequence (LotjaGi4g1v0373300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATGGGTTCCAGTAGTCAACCGAGCAAGAGAAAGGCCCCAACTGAAGAGGCTGGTCCTGCTGATTATGTCCACTT TTCAATCAAGGGTCAGGATGGGCGTCAATTGTTCTTCAAGGTGAACAAGGAGGCCAAGTTATTTAATGCATTCAGTAGCT ACTGTGAGCGAGTGAACTTGGAATATGAGACCATGCAGTTTTTACATGATGGTCAGTATGTCAAAGGGAAACGTCAAACA CCAAAAATGCTCAATCTGAAAAATGGTGATGAGATCGTTGCAGTGAGACACCAATCAGGAGGAGGTGTTGCATAA
Protein sequence (LotjaGi4g1v0373300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMGSSSQPSKRKAPTEEAGPADYVHFSIKGQDGRQLFFKVNKEAKLFNAFSSYCERVNLEYETMQFLHDGQYVKGKRQT PKMLNLKNGDEIVAVRHQSGGGVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 2 | 101 | 100 | 3.2E-21 | – | |
| SUPERFAMILY | 15 | 101 | 87 | 1.12E-15 | ||
| PANTHER | 18 | 103 | 86 | 3.4E-33 | – | |
| PANTHER | 18 | 103 | 86 | 3.4E-33 | – | |
| CDD | 24 | 95 | 72 | 1.48354E-13 | – | |
| ProSiteProfiles | 25 | 101 | 77 | 8.59 | ||
| Pfam | 29 | 92 | 64 | 5.4E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0373300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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