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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374100 |
| Transcript ID | LotjaGi4g1v0374100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 10; TAIR: AT1G26665.1 Mediator complex, subunit Med10; Swiss-Prot: sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b; TrEMBL-Plants: tr|C6TKB8|C6TKB8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0374100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75349931..75353172) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTCATCACAAGGTGCAGCTGTGGGGGGATATGGTGGGAGTGGTGGAAATGGACCGTTGGCCTCTCAAGCTAATGA CACAACAGCTTCTGCTGCTGCAGCAGGAGGTTATGAATCTATTCAGGAGCTGCACCAGCTTGACATTTCTATTCAGAGAA CTCTGGGCATTATCCATCAGCTTTACCTTACTGTATCTACCTACAATGCTGCCTTTCAAATGCCTCTCCTCCAACGCATG TATCTTCCTCTGGTCCTTTTACTGTCATGCATTTTTATTCTTCTTTGTTTCACTTCTTTTTCCATGTTCACAATTGATCA TTTTTTACTTCAATTTTCCAGCAATGTGCTGGTTGGGGAGCTTGACACCATGGTTAAATTGGCAGAGAAGTGCAATGTTC AGGTTCCTATGGAGGTTGTGAAGTAAGTCTTTTTGCCTGTGTTTGTGCTTCTATAGTTTTTCTACAACATAATATATGCT TCTTCTTTTTTCATTTGAAACCTAATTGTTTATTGCTGGTTTAGTTTGATTGATGATGGGAAGAATCCAGATGAGTTTAC CAAAGATGTTATAAACAACTGCATAGCAAAGAATCAGATCACCAAAGGAAAAACTGACGCATTAAAGGTTGATTCTCATT CTTGATTTTTATTAGATATGAGCACTCATTTTGTTTCCATTTTTTTTTCTTCACATATATTTAATTAGCTGCTTTAGTCC AACTTAGCATTTTCTGTTTGGGGCAGGATTTTCGCAAGCACCTTTTCGAGGAATTGGAGCAAAACTTTCCTGATGAGGTT GAAACTTTTAGAGAGAGTCGTGCTGCTGCTGCTGCTGTAAGTATTACTTATCTCGTGCCTTGTCGTGATTCTCATACTCT ATGACCTGACCACACAACAACTCATATGCCCGAAGACTCCTTTGAGAACTCCACAAATTTATTTTGATATATTCTCTGTA GTTGTTGGTTGTCTTCAAAGTTCAAAGAAACGAGAGGTACCTAAATCTGGGAGGCATACCTTCATACTGAAAGCACTATT CATTCTCTTTAGAGCCACTAGGTTGGCTTACTTCTTCCATAACAAAAGAAGTCCATCCGGATGTGCTGAGTTGTTACATT TATATTGCCTCCTGCCCTTTTTTCCATAGTTGTCAAAATCATGCTCCCACTTGTAGACTGTTACATGTTTTATGTGTTTC TCTGGCTTCTGCAACCCTCTTGGCGCATCATTTTGCTGCATCAGTGGTGAAACGTGTGCAAGATTGTCACAGTGTGTGAT TTTCTGACCAGACATCTGAGCCCTTCATATAGATGATTCATGTATTGGGTAGATGAAGAACTAAAAACCAGCATAGCCTA AAACTTTTACCTATCCACACTTGAATGACATTTTTTACTGCATTCTTTTACCCAACTGAACCTAATTTCATCTGTCCAAA ATATTTGACACCAACCCTTTGAAGTTTCACACAATTGATGCTTTCCCTGTGTGACTTGTCTCTGGTCTTGGCTGGGCTGT GTAACCTTGTCTGGGTTGTGGAATGGACGTTGACTAAGATTTGTCAGACTTTGATCGAGTAACTTGGTCTTTGGGACTGG GATTTGGAATTAGTTCTCACTTCTCTGACTTCTCCTGTGTTTGGGTTTGTGTTAGTTCCTCTTGACTCTTGTGTTGTTTT TGACATTCCTTGTTTCTGGGTGTTATGAGACAGAGTTAATCTCCTGTTTTTGACTTGTGATGATTGTAGCATTATAACTT CCTTTAGCTGACTTTTGAGACAACCTACTCCTATCTATTATGCATTTTGAAACAGAAGATATTGAAATGTCAGCTGTGGA TTGGTATTCTATTGTTATTCTGGCTTATCTGTGGGTGGGTGTAGGGAGCGTGTCGTGCGAGAGTGTTAGGAGAGTTAATC CTGACAATCCATGTATATATGATATTAAGATTGACTCTTCACTTCCCATGCCCTCACTTGATATGCCCCTATATATTATT GAAATATTGTTTATGACAGATAGGATCTTATGTTTCATGTTACTGGACTTAGGTATCATCTATGATTTTGACAACCTTGC TTTCTGCATTTTTCTCTTATCAACCTTCTTCACTGGAATGATTGATGGTTTGACTGGTAGCCATCTTAGCAATCTGTCCA CTTATTTCCCTCATCACCTACGCACCCGCATCAGGCATGACCTTGAGTTCTGATATAGAACTCTATTTTAACCAGATTAC CATACTACTCTTCTATCTTCTTTCCGGAACTTTTGATGGAAGAAAACAAGCAATAAACCCCAGGAATAGAGAAACAAAGA TATAATTCTCAAGAATCTAAGAAAGAAAGGAAATGCAGAAAAAGGGTAGTTCAGATCTTAGAGGGTGTGCAATCATCCCC CACTTACTCACCCAGTTTGTCCCTTCCTTCCCACTCTCTAGTTCTAATAATTTTCGCTAACATATCAGACCTTATGGCTA ACATATCAATCCTCCCTTCCTCATGGTACTATCCATGTGGCGATCTACTGTCTTAGGGCCCTTACACGGCATGCCTATCA AGTTTCTCTGGACTCTCAAATTAAACCAAATGATATACTGCCAAGTGAGTAGATAAACTGACAAGTTGATCCAGCTTAAC CATAGGTGTCAGGTTCGAATCTTGGACATGCAGTTGTGTTATAAATACTTGAAGACAGAGCTTTGCGGCCCATAGTAATC ATCCCATCTCAAGCTAGATTGTCTCCAATGAAAGATTTGTGTGAGCTAGATAAAAGAAATTAAACAAATGATATAGCCAA GAGAGGTTGTACATATTTTATGAAGAACTTGGCATGCATTATTATTGCATTCGATTCTACTACATTGAACCACTTATAGG TACTTGGTTAACAGTTACCTGTTGCTACCTATAACATCTAGGATCCCTTGTTCAGATTAAGATTACATATTCTCAATAAC TAATCCCACACAATTTAAATATTTTGGGTTTTCTTTCTGCTGCTTACACTGCATATCACATGGTTAATTTGGTACTTGGC TACTTTGTTGCTAATATTTTTTAATGGGCTTTGAATGCAAAAAGATGAAACCTGGTTAGTGAATTAAAATGTTTTAACAT TTGTTTTTCGTTTTGAGTTAACATATCTTGGTCTTATTGCATCTTTGCAGGAGTTGAAACGTCTGGCACAAGCACAAAGT GCACTACCAAATGGGGATGTGAGGGTTAAAGCAGAGCATTGA
CDS sequence (LotjaGi4g1v0374100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCATCACAAGGTGCAGCTGTGGGGGGATATGGTGGGAGTGGTGGAAATGGACCGTTGGCCTCTCAAGCTAATGA CACAACAGCTTCTGCTGCTGCAGCAGGAGGTTATGAATCTATTCAGGAGCTGCACCAGCTTGACATTTCTATTCAGAGAA CTCTGGGCATTATCCATCAGCTTTACCTTACTGTATCTACCTACAATGCTGCCTTTCAAATGCCTCTCCTCCAACGCATC AATGTGCTGGTTGGGGAGCTTGACACCATGGTTAAATTGGCAGAGAAGTGCAATGTTCAGGTTCCTATGGAGGTTGTGAA TTTGATTGATGATGGGAAGAATCCAGATGAGTTTACCAAAGATGTTATAAACAACTGCATAGCAAAGAATCAGATCACCA AAGGAAAAACTGACGCATTAAAGGATTTTCGCAAGCACCTTTTCGAGGAATTGGAGCAAAACTTTCCTGATGAGGTTGAA ACTTTTAGAGAGAGTCGTGCTGCTGCTGCTGCTGAGTTGAAACGTCTGGCACAAGCACAAAGTGCACTACCAAATGGGGA TGTGAGGGTTAAAGCAGAGCATTGA
Protein sequence (LotjaGi4g1v0374100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSQGAAVGGYGGSGGNGPLASQANDTTASAAAAGGYESIQELHQLDISIQRTLGIIHQLYLTVSTYNAAFQMPLLQRI NVLVGELDTMVKLAEKCNVQVPMEVVNLIDDGKNPDEFTKDVINNCIAKNQITKGKTDALKDFRKHLFEELEQNFPDEVE TFRESRAAAAAELKRLAQAQSALPNGDVRVKAEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 194 | 155 | 2.5E-78 | – | |
| PANTHER | 40 | 194 | 155 | 2.5E-78 | – | |
| Pfam | 51 | 162 | 112 | 4.9E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi4g1v0374100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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