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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374300 |
| Transcript ID | LotjaGi4g1v0374300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF538 family protein, putative (Protein of unknown function, DUF538); TAIR: AT1G55265.1 DUF538 family protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I1KSA4|I1KSA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0374300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75360477..75361414) extracted from Lotus japonicus Gifu genome v1.2.
TTTAATCATTCACAAAAGTTATCATCTTAAAGGTTTTTTTTTTTATTCGACCTTAATTATATGAATCCATTCCATTAGAG TCTCAAACTCAAAGGCTCTCTCATCTTGCACAATGTCTCCTCTTATCTTAAACTTGTTAATTCTGTGCTCCACATCCCTA TTCCATGTGATTTCTTCCACATCCACAGACATCCACGACCTTCTCCCTGAATACGGTTTCCCAAAGGGTCTCATCCCCAA CAACGCAATCTCCTACACCATCTCCACCGATGGCTTCTTCACAATCCAGCTCGATTCCCCCTGCTACGTCCACTTCTCCG ACCAGTACTTAGTCTACTTCCACACCCGCCTCACCGGAAAACTCTCCTACGGCTCCGTCACAAGAGTCTCCGGGATCCAG GCCCAGATACTCTTCCTCTGGCCCTCCGTTACCGGAATCAAGGTCCACAAGGACTCCGGCATGCTCGAGTTCTTTGCTGG AGCTTTGTCGCAGAAACTTCCGGCGGAGGAGTTTGTGAATGTGCCGGGGTGCTCCCCCAAGGCTTGTCAAGGAGGATCCA CTGCAACCAACCTCGTGGATCGCGTGTGAACAAAAGTCAATGATATGTTTTCATCTTCTGTTACCGTTTCTTCAAATTTA ATGAATCCCTGTTTTACTTTTACCTGAACATAAACGAATAAAAATTCTTTTTAAATGTTCTTGTTGGATATGTTAGTTTT GGTTTCATGATTTTTATGGATATACTTTTTTTTTAATCTATGGATATACTTCACTATTAAACTTTTTTTCATCAACATTT AATGACACATGAAATGATTGAACATTGTACCTTCTAAGTTTGGAAGCCCAAATCCGACTACTTGAATGATAAGTTCGACA AAAAAAAAAATGTCGTTTAAACTAGTCATTTAATTATGACTCTCCGAATTTAAAAGCC
CDS sequence (LotjaGi4g1v0374300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCTCTTATCTTAAACTTGTTAATTCTGTGCTCCACATCCCTATTCCATGTGATTTCTTCCACATCCACAGACAT CCACGACCTTCTCCCTGAATACGGTTTCCCAAAGGGTCTCATCCCCAACAACGCAATCTCCTACACCATCTCCACCGATG GCTTCTTCACAATCCAGCTCGATTCCCCCTGCTACGTCCACTTCTCCGACCAGTACTTAGTCTACTTCCACACCCGCCTC ACCGGAAAACTCTCCTACGGCTCCGTCACAAGAGTCTCCGGGATCCAGGCCCAGATACTCTTCCTCTGGCCCTCCGTTAC CGGAATCAAGGTCCACAAGGACTCCGGCATGCTCGAGTTCTTTGCTGGAGCTTTGTCGCAGAAACTTCCGGCGGAGGAGT TTGTGAATGTGCCGGGGTGCTCCCCCAAGGCTTGTCAAGGAGGATCCACTGCAACCAACCTCGTGGATCGCGTGTGA
Protein sequence (LotjaGi4g1v0374300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPLILNLLILCSTSLFHVISSTSTDIHDLLPEYGFPKGLIPNNAISYTISTDGFFTIQLDSPCYVHFSDQYLVYFHTRL TGKLSYGSVTRVSGIQAQILFLWPSVTGIKVHKDSGMLEFFAGALSQKLPAEEFVNVPGCSPKACQGGSTATNLVDRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 4 | 147 | 144 | 4.6E-57 | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| PANTHER | 4 | 147 | 144 | 4.6E-57 | ||
| SUPERFAMILY | 8 | 142 | 135 | 5.36E-36 | ||
| Gene3D | 14 | 138 | 125 | 4.1E-29 | ||
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 158 | 136 | - | – | |
| Pfam | 28 | 134 | 107 | 7.6E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0374300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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