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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0375000 |
| Transcript ID | LotjaGi4g1v0375000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein family; TAIR: AT2G44130.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130; TrEMBL-Plants: tr|E7BSD6|E7BSD6_CICAR F-box family protein; Found in the gene: LotjaGi4g1v0375000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75399573..75401277) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCAACCAGATGGACGCGACTACTCGATGAACCGGTACTTAACGGCTGGTCTCTCTATAAATGCTTCATCAAACTCCT TCGAATCTTTCACACTCACACTTCAATATCAACTAAACAAAACAAAAACAAAAAACCATGGATATCACTGAGTTCATCGA GTTAATTCCCGGGTTACCGAGTGAGCTCGGTCTCGAGTGTCTCACTCGCTTGCCCCACTCGTTACACCGAGTCGCGCTCC GAGTCTGCAGCCAGTGGCAATGCTTGTTCCAGAGCGATGAATTCTACTCTCACCGGAAGAAAACCGGCCACACCAGAAAA CTCGCCTGCTTGGTTCAAGCCCAAGAACCGCCACCGCACAATGAAGAGAAACAGGCAAACGGGTCATCGCCACCGAGCTA CGGGATAACCGTGTTCGACCCGGAGAGTTTTGTCTGGGACCGGGTCGACCCGGTTCCGGAATACTCTTCCGGGCTGCCTT TGTTCTGTCAACTTGCGAGCTGCGAGGGGAAGCTTGTGCTGATGGGTGGGTGGGACCCGGCGAGCTACGAGCCTCTCACG GCGGTGTTCGTCTACGATTTCAGAACGGGTGAGTGGCGGCGAGGGAGGGACATGCCGGAGAAGCGGTCGTTCTTCGCGAC CGGGTCGGGTAACGGTCGGGTTTATGTTGCTGGCGGGCATGATGAGAACAAGAACGCGCTGAACACGGCGTGGGCGTATG ACCCGAAAAAGGATGAATGGTTCGGGATGGCTCCGATGGGTCGGGAGCGTGACGAGTGCGAGGGAGCGGTGGTTGACGGC GAGTTCTGGGTGGTTAGCGGCTATGGTACTGAGAGGCAAGGAGCGTTTGATGGGTCAGCTGAGGTGCTGGATATTGGGTC GGGTCAGTGGAGGCGGGTTGATGGTGTTTGGGAACCGGGTCGGTGCCCCAGGTCTTGCGTTGGAGTGGAGAAGAGCGGGA AGGTGGTGAATTGGAGCGGGGTGGACCCGGGGCTCCGATCCGGTGTTTGTGGTGTGACGGTCGGGTCGAGAGCGTTGGTG ACTGGATCCGAATATGAAGGGTCATCATCAAATGGGTTCTATTTGATTGAAATGGAGGAAGGGCAAAAGTGTAAATTGAA GAAGATGAGTGTGCCTGATGGGTTTTCTGGGTTTGTTCAATCAGGGTGTTGTGTTGAAATCTAGTTAATTAGTAGTTAGT GTAAGCAAAGTGAAGTGAGAATATGCCATCTTCCACAAATGGAAAGAATGCTAGTTAAGTAGTTATTTTGATTACTTTTC TTTTTTTTAAAGTAAGTGGGAGGTTAGAACCTGATTTTTTCTTTTTCCAGGTTACAAAACAGATGCTGCTAATGTTTTGT TTTGGAAAAGAAAAAATGTTAAAACATGTGATAAATTCAAGATATACTTCAGAAAATGGATAGACAGACTGTTTATCTTT TGAAGAAAACTTTGGCAATTTAGCATTGTAATCTTAGTTTATGGACCAGTCTCTTGCATCGTATAATACGCTGCTTTGCA TCTATTTGCATAATTTTTTGAGCTTGGAAGACGTGGACATGGATTACCTACACTAGAGAATCTCTAGATTCACTTGCTCA TAGAATTTGAGCCGTGCAATGAGTTTAACTAATGCAATTGTATATAGAGTAATACATTTTTCTAACATTTGGTAGGGTTA TTATAAGAAAAGTGCCGAAATATTT
CDS sequence (LotjaGi4g1v0375000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATCACTGAGTTCATCGAGTTAATTCCCGGGTTACCGAGTGAGCTCGGTCTCGAGTGTCTCACTCGCTTGCCCCA CTCGTTACACCGAGTCGCGCTCCGAGTCTGCAGCCAGTGGCAATGCTTGTTCCAGAGCGATGAATTCTACTCTCACCGGA AGAAAACCGGCCACACCAGAAAACTCGCCTGCTTGGTTCAAGCCCAAGAACCGCCACCGCACAATGAAGAGAAACAGGCA AACGGGTCATCGCCACCGAGCTACGGGATAACCGTGTTCGACCCGGAGAGTTTTGTCTGGGACCGGGTCGACCCGGTTCC GGAATACTCTTCCGGGCTGCCTTTGTTCTGTCAACTTGCGAGCTGCGAGGGGAAGCTTGTGCTGATGGGTGGGTGGGACC CGGCGAGCTACGAGCCTCTCACGGCGGTGTTCGTCTACGATTTCAGAACGGGTGAGTGGCGGCGAGGGAGGGACATGCCG GAGAAGCGGTCGTTCTTCGCGACCGGGTCGGGTAACGGTCGGGTTTATGTTGCTGGCGGGCATGATGAGAACAAGAACGC GCTGAACACGGCGTGGGCGTATGACCCGAAAAAGGATGAATGGTTCGGGATGGCTCCGATGGGTCGGGAGCGTGACGAGT GCGAGGGAGCGGTGGTTGACGGCGAGTTCTGGGTGGTTAGCGGCTATGGTACTGAGAGGCAAGGAGCGTTTGATGGGTCA GCTGAGGTGCTGGATATTGGGTCGGGTCAGTGGAGGCGGGTTGATGGTGTTTGGGAACCGGGTCGGTGCCCCAGGTCTTG CGTTGGAGTGGAGAAGAGCGGGAAGGTGGTGAATTGGAGCGGGGTGGACCCGGGGCTCCGATCCGGTGTTTGTGGTGTGA CGGTCGGGTCGAGAGCGTTGGTGACTGGATCCGAATATGAAGGGTCATCATCAAATGGGTTCTATTTGATTGAAATGGAG GAAGGGCAAAAGTGTAAATTGAAGAAGATGAGTGTGCCTGATGGGTTTTCTGGGTTTGTTCAATCAGGGTGTTGTGTTGA AATCTAG
Protein sequence (LotjaGi4g1v0375000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDITEFIELIPGLPSELGLECLTRLPHSLHRVALRVCSQWQCLFQSDEFYSHRKKTGHTRKLACLVQAQEPPPHNEEKQA NGSSPPSYGITVFDPESFVWDRVDPVPEYSSGLPLFCQLASCEGKLVLMGGWDPASYEPLTAVFVYDFRTGEWRRGRDMP EKRSFFATGSGNGRVYVAGGHDENKNALNTAWAYDPKKDEWFGMAPMGRERDECEGAVVDGEFWVVSGYGTERQGAFDGS AEVLDIGSGQWRRVDGVWEPGRCPRSCVGVEKSGKVVNWSGVDPGLRSGVCGVTVGSRALVTGSEYEGSSSNGFYLIEME EGQKCKLKKMSVPDGFSGFVQSGCCVEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 348 | 344 | 1.1E-179 | – | |
| PANTHER | 5 | 348 | 344 | 1.1E-179 | – | |
| SUPERFAMILY | 9 | 52 | 44 | 1.44E-5 | ||
| Gene3D | 65 | 284 | 220 | 1.8E-39 | ||
| SUPERFAMILY | 86 | 333 | 248 | 4.97E-41 | ||
| Pfam | 120 | 160 | 41 | 8.8E-9 | ||
| SMART | 125 | 173 | 49 | 1.7E-6 | ||
| Pfam | 163 | 207 | 45 | 5.1E-12 | ||
| SMART | 174 | 221 | 48 | 4.5E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0375000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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