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LotjaGi4g1v0375400.1

Overview

Field Value
Gene ID LotjaGi4g1v0375400
Transcript ID LotjaGi4g1v0375400.1
Lotus japonicus genome version Gifu v1.2
Description Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT3G13560.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q94CD8|E134_ARATH Glucan endo-1,3-beta-glucosidase 4; TrEMBL-Plants: tr|I1KSB7|I1KSB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0375400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:75435314..75438114) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAAGATAACTGAATGAATATTATCCTTTTGAGTTGATGTTGGATCAAATTGTTTAACTTGTAGGTGCGTTTGTGGGG GTAAACATTGGCACTGATGTTTCTGATATGCCATCCGCTTCAAATGTGGTCGCTATTCTAAAAGCCCATCAGATTACTCA TGTGCGTCTGTATGATGCCAACGCACACCTACTACAAGCCCTTTCAAACACTAGTATTGAAGTAACTGTTGGTGTCACCA ATGAAGAGGTATTGAAGATTGGAGAATCTCCATCAGCAGCTGCAGCCTGGATTAATAAAAACGTGGTTGCTTATGTACCA TCGACCAATATCACATCAATAGCTGTTGGCAGTGAGGTTCTTTCCACAATCCCGAACGTTGCCCCTGTTCTGGTTCCTGC CATGAATTCTCTTCATAAAGCCTTGGTTGCTGCGAACCTTAACTTCCGGGTCAAAGTTTCAACTCCCCAGTCTATGGATA TTATCCCTAAGCCTTTTCCTCCTTCTGCTGCCACCTTTAACTCTTCATGGAACTCCACAATCTACCAACTCCTCCAGTTT TTGAAAAACACAAATTCCTCCTACATGTTAAATGCCTACCCTTATTATGGATACACAAAAGGAGATGGCATTTTCCCTAT TGAATATGCTCTTTTCCGACCCCTTCCTTCAGTGAAGCAGATTGTTGACCCAAACACGCTATATCATTATAACAGTATGT TTGATGCTATGGTGGATGCTACCTATTACTCTATAGATGCCTTAAATTTCAAAGGTATACCCATTGTTGTCACTGAGACT GGCTGGCCATCGTTTGGTGGAGCAAATGAACCGGATGCTACTGAAAAAAATGCTGAGACCTACAGTAATAATATGATTCG GCGAGTTATGAATGATTCGGGTCCGCCGAGTCAACCAAGCATACCCATCAATACATACATATATGAATTATTTAATGAAG ACAAGAGGAATGGACCTATATCAGAAAAAAATTGGGGCATCTTCTATACTAATGGAAGCGCTGTTTATCCATTGAGTTTC AGTGCTTTTGGCCAGGTCACTGGAAATTCTTCGGCAATTTTTTGTGTAGCGAAAGATGGGGCAGATGCTGATGAGCTGCA AACTGGCCTGAGCTGGGCTTGTGGACAAGGCGGAGCAAACTGTGCTGCCATTCAACAAGGGCAGCCATGCTATCTTCCCA ATGATCTGAAAAGTCACGCCTCTTATGCTTATAATGATTATTATCAGAAAAAGAACAATGCTGGGGGAACATGTGACTTT GATGGTACTGCTGAAGTTACTACCCAGGATCCAAGTAAGTTGATATGACTTCTTATTTCTATGTTAACTCAATTTTTCTC TAGACTGTCACAAGTATAAAACTGTATCCTTTTCAAATTGCATACGTGCTAGCAGTCGTAGAAATTTAACGACTTGTCTT CCTCATTAAAAACAGCTTGTGCAGTTAAACCATAGATTGGAAAGTCATTGGTTGTCATCTCTATCTGACTTACCAATAAG CCGAGAAAGCGGTTATATTTATAATAACTATTCAGTAGTAGTAGTAGTATTACCGTTAACTGGGTGGATCTCGTGGCATT CCTGTTAATTCTATGGGTCTAGTTACCCCATATATCTGATTTAGTGGTGTCTTACCTGTGAAACTTAGTATTTAAGACCA CTTGCTGCTTTGATGCTTGATAGGGTTTTGGGAGCCTTTGTTTGGTTTGATGATGTTGTTGTATTTGTGATCCCCAGGAC CCAGATGTAAAACCTTTTTGAAATCTCATCAGAACTCCTAGGCTGCTAGAAATGTTGCATCCCGAAACTGATTGCATAAT TGAAAAACTAGTGGTGGGGAGTAGTGAATTCTCTCATTGAAATTACTAATGATAAATGTCATGTTAAAATTTTGTTTTGC TCCTATAAGTTGAGTCATTTTAGAGGGTAAAGTAAGTCATCACTACTGATAATTGAGAAATCAATGGTTGAGATTTAAAG AACAGTTTATTCTACATGTGCAAGTATACGATCACAATCTTAACTGTTAATTTCTCGATTTATGGGCTGTGAGAATTACT TTACCCTCTTATAAGTGGCTCTCAATTTAGAGGACCAAGATCCAAATAGATGAGGCCTTAATCCAAATTTGTTAATAACT TAATATTTATCAAGAGAGAAATGCATACAGAAATTTTACATGTGAAATTTAATATAAGATGATCCATTCCTCTAGTGCTG GACTTTTCCAAGGACTTATTTTAAACCAACACCTTGTTGTTTTGTTGGTCAAACCCCGAGAAATTCGCCTGTTAGGAGGG ACTACCATAGTTTTCTAAACGGGATTAGTCCTGCCCTCAAAGGGGGTCGGGACACGTCTAGGAATAAAAAAACATTTTGT GGTATTTTAAGTTTCTATTCCATTCAGTGTGGTTTTAATCACTAAATTATTTCCTTGTGAGTACAGTAATATTCTTGTGT TGAGCATTTGTAATCTGTTACTTAAACAATTAATGCTGGTACCCTGTTGCAGGTCATGGATCCTGTATATTTTCCGGAAG GTTAGAATCTTAATCTTTACACATCCATGATTAATCAGATTTGGATATATTTGTTGCTTTTATAAATTCTTATCTGACCA TGGATTATTTTGATATCAGCTCTAACCCTGGTGGGGTGAGTTTACCTCCTACGGCCCTTGGACCTTCAAGCCCATTTGGA GCAAGTATGAACCTGCAAGTGACAAGCCTTCAGTATTTGATATCTGCTATTGCTGTATTTTTTGCTCTGGTGATGTTGTG A
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0375400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCATCCGCTTCAAATGTGGTCGCTATTCTAAAAGCCCATCAGATTACTCATGTGCGTCTGTATGATGCCAACGCACA CCTACTACAAGCCCTTTCAAACACTAGTATTGAAGTAACTGTTGGTGTCACCAATGAAGAGGTATTGAAGATTGGAGAAT CTCCATCAGCAGCTGCAGCCTGGATTAATAAAAACGTGGTTGCTTATGTACCATCGACCAATATCACATCAATAGCTGTT GGCAGTGAGGTTCTTTCCACAATCCCGAACGTTGCCCCTGTTCTGGTTCCTGCCATGAATTCTCTTCATAAAGCCTTGGT TGCTGCGAACCTTAACTTCCGGGTCAAAGTTTCAACTCCCCAGTCTATGGATATTATCCCTAAGCCTTTTCCTCCTTCTG CTGCCACCTTTAACTCTTCATGGAACTCCACAATCTACCAACTCCTCCAGTTTTTGAAAAACACAAATTCCTCCTACATG TTAAATGCCTACCCTTATTATGGATACACAAAAGGAGATGGCATTTTCCCTATTGAATATGCTCTTTTCCGACCCCTTCC TTCAGTGAAGCAGATTGTTGACCCAAACACGCTATATCATTATAACAGTATGTTTGATGCTATGGTGGATGCTACCTATT ACTCTATAGATGCCTTAAATTTCAAAGGTATACCCATTGTTGTCACTGAGACTGGCTGGCCATCGTTTGGTGGAGCAAAT GAACCGGATGCTACTGAAAAAAATGCTGAGACCTACAGTAATAATATGATTCGGCGAGTTATGAATGATTCGGGTCCGCC GAGTCAACCAAGCATACCCATCAATACATACATATATGAATTATTTAATGAAGACAAGAGGAATGGACCTATATCAGAAA AAAATTGGGGCATCTTCTATACTAATGGAAGCGCTGTTTATCCATTGAGTTTCAGTGCTTTTGGCCAGGTCACTGGAAAT TCTTCGGCAATTTTTTGTGTAGCGAAAGATGGGGCAGATGCTGATGAGCTGCAAACTGGCCTGAGCTGGGCTTGTGGACA AGGCGGAGCAAACTGTGCTGCCATTCAACAAGGGCAGCCATGCTATCTTCCCAATGATCTGAAAAGTCACGCCTCTTATG CTTATAATGATTATTATCAGAAAAAGAACAATGCTGGGGGAACATGTGACTTTGATGGTACTGCTGAAGTTACTACCCAG GATCCAAGTCATGGATCCTGTATATTTTCCGGAAGCTCTAACCCTGGTGGGGTGAGTTTACCTCCTACGGCCCTTGGACC TTCAAGCCCATTTGGAGCAAGTATGAACCTGCAAGTGACAAGCCTTCAGTATTTGATATCTGCTATTGCTGTATTTTTTG CTCTGGTGATGTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0375400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSASNVVAILKAHQITHVRLYDANAHLLQALSNTSIEVTVGVTNEEVLKIGESPSAAAAWINKNVVAYVPSTNITSIAV GSEVLSTIPNVAPVLVPAMNSLHKALVAANLNFRVKVSTPQSMDIIPKPFPPSAATFNSSWNSTIYQLLQFLKNTNSSYM LNAYPYYGYTKGDGIFPIEYALFRPLPSVKQIVDPNTLYHYNSMFDAMVDATYYSIDALNFKGIPIVVTETGWPSFGGAN EPDATEKNAETYSNNMIRRVMNDSGPPSQPSIPINTYIYELFNEDKRNGPISEKNWGIFYTNGSAVYPLSFSAFGQVTGN SSAIFCVAKDGADADELQTGLSWACGQGGANCAAIQQGQPCYLPNDLKSHASYAYNDYYQKKNNAGGTCDFDGTAEVTTQ DPSHGSCIFSGSSNPGGVSLPPTALGPSSPFGASMNLQVTSLQYLISAIAVFFALVML
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.20.20.80
1 311 311 1.3E-108 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 436 436 - –
PANTHER
PTHR32227
1 426 426 2.3E-248 –
PANTHER
PTHR32227:SF324
1 426 426 2.3E-248 –
Pfam
PF00332
2 311 310 1.4E-71
IPR000490
SUPERFAMILY
SSF51445
2 310 309 5.97E-76
IPR017853
ProSitePatterns
PS00587
224 237 14 -
IPR000490
SMART
SM00768
324 409 86 2.3E-47
IPR012946
Pfam
PF07983
325 395 71 3.5E-20
IPR012946
Phobius
TRANSMEMBRANE
437 457 21 - –
TMHMM
TMhelix
439 456 18 - –
Phobius
CYTOPLASMIC_DOMAIN
458 458 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0375400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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