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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0378100 |
| Transcript ID | LotjaGi4g1v0378100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT1G29195.1 phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein; Swiss-Prot: sp|Q9M394|SCKL1_ARATH Fructokinase-like 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9TJW9|A0A0L9TJW9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0378100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75709589..75711249) extracted from Lotus japonicus Gifu genome v1.2.
TGCACAATTAGTTCATTATACCCACTTTCTAAGTCTAATAGTAGATGATTAGCCAGATCATAGAGTCTGAGATCAATATC TGTTTGTTTGGCTCACTCACCCACCATATATTTACTCTTTCTACCTCTCTTTCTCCTTTCTCTATCATTGAGAACCAAAC TGAGATACCAATGAAAAGAGAGGGAGTGAAGAAGAAGCCATGAAAGACAGCATAAGGTGTTGCATCTCTTGCATCCTCCC ATGTGGAGCCTTAGACGTGATCCGCATAGTGCACTCCAATGGAAGAGTAGAAGAAATCAGCGGCACCATCAAAGCCTGTG ATGTCATGAAGGCACACCCCAAGCATGTCCTGAAGAAGCCGCACTCCACCTCCTCCTCCGCCGCCAGAGATGGTGGCGGA GGTGGAGGCGGAGAGGAGCTCCCCAAGATTGTGATCGTGCCGCCTGATGCAAAACTCCAACGTGGGAAGATTTACTTCCT CATGCCCCTCCCTCCTACTGCAGAGAAGAATCAGAAGAAAAGGAAGAAGAGGAAGGAACAGAACAACAAAAACAACAACG ATGGTAGTAGTATTTCTATGCAAAGCTTGCTTGATTCTGATCGCTACTTGTCTGATATACTCTCAGAGAAGGTAACTACA ACAAAAGACAGAAGAAGGGGGCGTTTTGCTGTGTGGAGGCCTCACTTGGAGAGCATTTCAGAGACACCATGTGATCTCTG AAAGGGTTAGCTATATGTCCATCCAGGATTCTAAATTGCGGAACGCATTGCGTGATGTGGCTGCAGTATTGCGGTTGCGG AGGGTACCGCATCGGCATTAGACCATAATTGCTTATAGGGTATCTATGAAGAGATTTTCTTTCCCATTTTTAAAAAATAT AGAGAAAATAAAACTCCTTTATTCTTCTTTTGTCTCTGTTTTTGCTCTGCTTCCTCTTCCTCTGCTGAGGCTTTCTGTGT ATATAGAGTAGCCAATACATGGGGCCTAGAATTGTAACCATATATATATATATATATATATATATATATATATGTATATG TTTGTATCAGTTTCGAATCAATTCAGAAACTTATAACCTACTCGCATAAGATTCTCCTCATAATTGGTTCTAGTTCATGA ATCAATTGTAGAAAGATTTCCAATCATGCGCCTAATTTTGTTCATTATTGTTTGAGGGTGTGTTCACATAGTGGGGCATA TAATTGATCAAAGGGTGTCCTGATTTTGTAATTTCCAGGAAGTGGTGAAGCAAAGAACTTCATATGGATTTCAATTTGTC TTGGTTTTAACTGTTGAAGCAAAGAATTTAGAAGAGTACCCATAAAAGATGAACTATGATTGAAACATGGAGAGGATGAT TATGATCCCAGTTGTACTTTGTCAGTATATGGGGCATACCACAAATGTAATTCTGTATTGGATCATATTGGAAGCTGATT GCGACAGACATGATAGATGTTATGCTTCTGCTACCACTAAAAAACTTCATTTGCCATTATTCCCATTGTTCTTTAAATGA CAGAGTAGTTTGGATGTGTCAATCATTCTTTAAAGAGAGATGATAACATAATGCCGCTATCACTTTCTACTTTCTATATA AGCTTACATATTTTATTATGATTCTGATAATAATAGTATAACATGTTAATCATTTTGCCTG
CDS sequence (LotjaGi4g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGACAGCATAAGGTGTTGCATCTCTTGCATCCTCCCATGTGGAGCCTTAGACGTGATCCGCATAGTGCACTCCAA TGGAAGAGTAGAAGAAATCAGCGGCACCATCAAAGCCTGTGATGTCATGAAGGCACACCCCAAGCATGTCCTGAAGAAGC CGCACTCCACCTCCTCCTCCGCCGCCAGAGATGGTGGCGGAGGTGGAGGCGGAGAGGAGCTCCCCAAGATTGTGATCGTG CCGCCTGATGCAAAACTCCAACGTGGGAAGATTTACTTCCTCATGCCCCTCCCTCCTACTGCAGAGAAGAATCAGAAGAA AAGGAAGAAGAGGAAGGAACAGAACAACAAAAACAACAACGATGGTAGTAGTATTTCTATGCAAAGCTTGCTTGATTCTG ATCGCTACTTGTCTGATATACTCTCAGAGAAGGTAACTACAACAAAAGACAGAAGAAGGGGGCGTTTTGCTGTGTGGAGG CCTCACTTGGAGAGCATTTCAGAGACACCATGTGATCTCTGA
Protein sequence (LotjaGi4g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDSIRCCISCILPCGALDVIRIVHSNGRVEEISGTIKACDVMKAHPKHVLKKPHSTSSSAARDGGGGGGGEELPKIVIV PPDAKLQRGKIYFLMPLPPTAEKNQKKRKKRKEQNNKNNNDGSSISMQSLLDSDRYLSDILSEKVTTTKDRRRGRFAVWR PHLESISETPCDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 5.3E-70 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 170 | 170 | 5.3E-70 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Pfam | 9 | 168 | 160 | 3.1E-32 | ||
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 173 | 147 | - | – | |
| MobiDBLite | 48 | 76 | 29 | - | – | |
| MobiDBLite | 96 | 129 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0378100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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