Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0380700 |
| Transcript ID | LotjaGi4g1v0380700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G03170.1 FASCICLIN-like arabinogalactan-protein 11; Swiss-Prot: sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11; TrEMBL-Plants: tr|B7FJN1|B7FJN1_MEDTR Fasciclin domain protein; Found in the gene: LotjaGi4g1v0380700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75984336..75985953) extracted from Lotus japonicus Gifu genome v1.2.
CTCACCACTATGATGCACCACCTTACAATGACAGGTAAAGGAGATTTGTCCTCTCAGAAAGTTAATCAGAAATAATTGCA TCTTTCTAACTAAACATTTCACCTAATTAACAAATCATAATTCTCTCCCACACTCTACCATAAAAGGCAACCCTTCTCCC TCTTCCATCACAGCAACTCCAAGCAAAAACAGAGTATCTCAAAACAGAGTGTCCAAAACAAAGTATCCAAACCATCTCAG AAAGTACAGAAAAATGAAGATGCAAATTGAACAATCTCTCATTTCCACCATTTCAATTCTTCTCCTAGCACTTTCCTTCT ACCCCGTCACCATTTCAGCTCAACTTTCACCAATTCAACCCCCAACCACATCTTCATCTCCTCCAGCACCACCCTTACCA CAACCCTCTCCACCAACTCCAGCAACCGCTTCTCCACCGGTTACAGCAACAGCCCCAGCTCCGGGATTCAACACCGTCCC ACTAGTTCCCGTAACCCCCAGCGGTGCTCCCACACCCGCCGCCGCCGCAATCCCAAAAGGCCCCACCATAGACATCCTCC AAATCCTGAGAAAAGCCAAGAGATTCTCTGTTCTGCTTCGCCTCTTGAAGACAACACAGCTCATCAACCAGCTGAACTCG CAGCTCGTGACCTCAGGCTCAGGTGGGTTAACCCTGTTCGCACCAGAGGACAGTGCATTCTCCAAACTGAAACCTGGGTT CCTCAACTCCCTCAGTGACAGACAGAAAGTTGAACTCTTACAGTTCCACACGCTCGCTTCCTTCATCGCCATCTCCAACT TCGACACGCTCACAAACCCTGTTCAGACCCAAGCCGGTGATGACGCGAGGCTTCAGCTCAACGTGACCAGCATCGGCGGC AGCAGTGTCAGCATGGCCACCGGCGCCGTCAACGCCTCCATTACCGGCACTGTCTACGCCGACAACAAGCTCGCCGTGTA TCAGGTGGACAAGGTTCTCCTCCCTCTTGACCTTGTGCTTCCCGCCAAGGCTCCGGCGTTGGCGCCGGAGCTAGCTAAGA AAGGCTTGCCTAAGGCCGGGAAAGCAAATTCGACGACGGCGGCAGATGATAGTAGTGCCGCCGGGGATGATGGTGGTGCT GATGGAAAGGATTTACCTGCGGAAGTTTCTGCAGGTGGCAGTGTGAGGTTCTTTATTTGGGTGAATGTTGTTGTTGTTGT TGGAGTGGGTTTGCTTGGTGGAGTCATGGTATGAGGTGGAAGTGAATTTGGATTGAGGGATCCCATGATTTTTTTGATGT GCTTTCTTTTGCTGGTTTTCTGAGTGATTTTGTGTAATGTTTTGAGCTTCTAGTATGTGTGAATAGTGTAGGGGGGAAAA ACATGCATGCTGCATTCTGGGTTTCTTTTACTATTGTCATTGTTTTTCATTTTGATTTGGTAACTTATTGTATATGTTCA TCCCATTGCGCAATTAAACGGTTGAGATTATTGAAAATTGATTTGCAGTAGAAAAACAAGAAAATTAGAATGAAAATAAA TACGATAAAATAGTAATAGCTTGAGGTATGTCACATAATAATGTACATCACATGACACGGTACTTAAGAGTTTAATTATT CGAGATACGATACATTCT
CDS sequence (LotjaGi4g1v0380700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGCAAATTGAACAATCTCTCATTTCCACCATTTCAATTCTTCTCCTAGCACTTTCCTTCTACCCCGTCACCAT TTCAGCTCAACTTTCACCAATTCAACCCCCAACCACATCTTCATCTCCTCCAGCACCACCCTTACCACAACCCTCTCCAC CAACTCCAGCAACCGCTTCTCCACCGGTTACAGCAACAGCCCCAGCTCCGGGATTCAACACCGTCCCACTAGTTCCCGTA ACCCCCAGCGGTGCTCCCACACCCGCCGCCGCCGCAATCCCAAAAGGCCCCACCATAGACATCCTCCAAATCCTGAGAAA AGCCAAGAGATTCTCTGTTCTGCTTCGCCTCTTGAAGACAACACAGCTCATCAACCAGCTGAACTCGCAGCTCGTGACCT CAGGCTCAGGTGGGTTAACCCTGTTCGCACCAGAGGACAGTGCATTCTCCAAACTGAAACCTGGGTTCCTCAACTCCCTC AGTGACAGACAGAAAGTTGAACTCTTACAGTTCCACACGCTCGCTTCCTTCATCGCCATCTCCAACTTCGACACGCTCAC AAACCCTGTTCAGACCCAAGCCGGTGATGACGCGAGGCTTCAGCTCAACGTGACCAGCATCGGCGGCAGCAGTGTCAGCA TGGCCACCGGCGCCGTCAACGCCTCCATTACCGGCACTGTCTACGCCGACAACAAGCTCGCCGTGTATCAGGTGGACAAG GTTCTCCTCCCTCTTGACCTTGTGCTTCCCGCCAAGGCTCCGGCGTTGGCGCCGGAGCTAGCTAAGAAAGGCTTGCCTAA GGCCGGGAAAGCAAATTCGACGACGGCGGCAGATGATAGTAGTGCCGCCGGGGATGATGGTGGTGCTGATGGAAAGGATT TACCTGCGGAAGTTTCTGCAGGTGGCAGTGTGAGGTTCTTTATTTGGGTGAATGTTGTTGTTGTTGTTGGAGTGGGTTTG CTTGGTGGAGTCATGGTATGA
Protein sequence (LotjaGi4g1v0380700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMQIEQSLISTISILLLALSFYPVTISAQLSPIQPPTTSSSPPAPPLPQPSPPTPATASPPVTATAPAPGFNTVPLVPV TPSGAPTPAAAAIPKGPTIDILQILRKAKRFSVLLRLLKTTQLINQLNSQLVTSGSGGLTLFAPEDSAFSKLKPGFLNSL SDRQKVELLQFHTLASFIAISNFDTLTNPVQTQAGDDARLQLNVTSIGGSSVSMATGAVNASITGTVYADNKLAVYQVDK VLLPLDLVLPAKAPALAPELAKKGLPKAGKANSTTAADDSSAAGDDGGADGKDLPAEVSAGGSVRFFIWVNVVVVVGVGL LGGVMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| PANTHER | 4 | 326 | 323 | 2.7E-139 | – | |
| PANTHER | 4 | 326 | 323 | 2.7E-139 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| Phobius | 30 | 305 | 276 | - | – | |
| MobiDBLite | 34 | 68 | 35 | - | – | |
| MobiDBLite | 37 | 63 | 27 | - | – | |
| SUPERFAMILY | 94 | 245 | 152 | 1.44E-24 | ||
| ProSiteProfiles | 98 | 242 | 145 | 19.977 | ||
| Gene3D | 98 | 245 | 148 | 2.2E-14 | ||
| Pfam | 110 | 244 | 135 | 8.8E-20 | ||
| SMART | 140 | 245 | 106 | 6.7E-19 | ||
| MobiDBLite | 266 | 290 | 25 | - | – | |
| Phobius | 306 | 325 | 20 | - | – | |
| TMHMM | 306 | 325 | 20 | - | – | |
| Phobius | 326 | 326 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0380700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…