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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0383800 |
| Transcript ID | LotjaGi4g1v0383800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold acclimation protein; TAIR: AT1G29390.1 cold regulated 314 thylakoid membrane 2; Swiss-Prot: sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic; TrEMBL-Plants: tr|I3SSQ8|I3SSQ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76245662..76249226) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCTGTGGCAGATTATGTTGGATGTAGTATCCAGAATAAGGTGTGTCTTAGTTGCGACCTAGTCCTAGATCCGCGAT CTCAGCTCTAATGTGGCATTGGATGCTAGGCCGCGTCTTGCGGTGGATGGTAGTTGGGATCCGCATATGAGAATGATGGG TTGTGGTGCGACTCTTCTTGATGCATCAAGACATTGAATTTATGGGATGTCTATGAGTCTTGAGCATGAGCACACATTCT TAGCTGACCTTCTAACAGTGGAGAATAATTTAAAGCATGCCTAAGATCTTGGGTTCAAGGATATTTCATGCGTTTCAGAC TGCATCACTACAATTCAGATCCTCCGAAGCTAGGATGATGTTCACAAATTTTGGGCTTGAGATTATGTTCAATGGATACA AGCCACGTCAAATTAAGACTGGAATGTCACTCTTAGGCATATTCTTAGAGATAAAAACAATGCAACTAATCCGTAGGCCC GTCAAGCTCCTCAACAGAGTTCGCCCAACGTACTCAGCGTATCTGAAAGTTACCGCCGCCTAACGGTGTTGTTTCGTTAT CATGATAGTTTCTTCATGGTTATTTTTCAGCCACTTTTTTTACTATGACCCTAAGTAACATATGAATTATTGAATCTTCT TTCTCTAAACCTTAGCATCTCTAATTAAAATTCCACTTTTATAGACTCTTATTTGGGAAATATTGTAAACCAAACTAGCA CTTAAACTAGTAAGGAGAGTGTGCAATTATTTGTGTCCTCCCAAAATTGAAGTGTAGAGCAAAGTTGCAGAACTTGAAAC AAAGAAGAAGAAGTAGTAGAAGAAAATGTCACAGTCATTCTGTGTGTCTTCCTCCGCTGCAACTGCACGACCCACTTTCT CTCTCCTCAAGTGCCACCACCCTTCACCACCACGTGTCACTCTGCTCTCTCTTTCTCGCTCACCACCGTCGCCGTCGTCA CTCTCCTTCTCCTCCTCCACCTTCAACCCCCTCAAGCTCAGGTAACCATTGTCCCTCCCCTCGCATTTCTCCCTCATTCG TTTCGATCTCTTCTTGACTCTGGTTTTCATCTCAGGTCTCCGATCGGCCATGGCGGAATCGGAAGCATGGTGAAGCCGAG GACCAGCAACAACAGAAGCTCAGGATTCCGTGTGCTTTGTTATGCTCGACCTTTCGCTCCTCCTAATCTGCAATGGATCG CCGCCGTTTCTTCTCTGTCAGTTCAACTCTCATCTTTACCATTTGATCTGCTTAGTTACTCTGCTTCTGTATTGTATCCA CAAGTTTCAATCACGTGATTTATAGCTTTTTTTTTATTTGAAAGTTTCAATCTTTGCAGATCACACACTTCTATTGTAAG ATACCACTTTGAAAATTTTAATTAAGATATGTTGAAAAATAAATAACAACATTAAATTCCTATGAAAGTTTTTTTTTTTT TTTGATTGGGTGTGTTTGATAGAGATGTGTTCATGTAAGAATTGATTGTGAAAATGAAATATTATCTGCATAAAATATCC CAACTTTTTTATTTATAGGTTTCTGATCTGTTCAACACTTTGATGTTGAAACCTGTGTATTTCCTCTTTTCTATTTCAGT TTGAGTTCTTAATCATGGAAAATGTATTTTTTTTTTATCTCTAATTAATTTTCCAAATTTCACTATACTAGGCATGAGTA CTTTTTTTTTCCCCCTCCTTTTAATATCACAAGAGAAATGTCTGTTTGCAAATCAGTTTTTTAACCTCTACTGTGTCTGT TACATAATGCAATATCTTAGATGTGGCTGATGGATATTCATAATCTTGTAGGGTTTTGATACTGGCAAAGGGAACCACCG TGCCGAAATCATTCATTGTTCCATTATTTGCTTTGCAAGCGCCTGCCGGTTTCATTGCCTGGATAAAGTATGTCGTTAAT TCTTTGTTTTATTTTCTTGTTCAGTTTATATAGTGAATTGTTTAGAAGTAGTTTGTCCTCTGTTTGTTCAACAAATTCTG TAGGGTATTATTCTATCTGTACACCTAGAGTTGTTTTTTTCACTGGTGTTCTTTTTACCCTTTTTCTGATCATAACATTT TACACCATACAGAGGTAGTTATGGGATGTGGGCAGCATTCTTGGCACTTCTGGTTCGTCTCTTCTTTTATATTCCTGGTA TGCTCTCTTATCCGTTGTGCTCATTTACACGTAAAATTTCTGAAATACTGAAGGAGTAACAATGGACACCTTAGACCTCA AGAAGACCACGCATATAACCCTCGTTGAAATTGTGTAATCAACACATACCTCTAGGCAGGTTCTGTATCTGAGTATAAAC TACAAAACAACCTAAACAGCAAAAAAGTATGTTTTCCTCTAGCTACATACATTGATGGAATGATGTCATAATGCCCCATT GGAAATCATGTTTAAAGACAAACCATAATGTAAATGATTCTTAATGGTTTGACCTATAGTTTGTTAAGGCCTTTCTCTAC CTTTAACATTTGAACTACTCTCTGTCTTTCTCCGCGCATACCCCAATCATCCAAGTTAAGATTCTTCCTTAACGCAATAG ATGCTGCCCCGACTTTCTTTCTAATGCATTCATTTCTAATCCTATCTTGTTTTGTGTCTACTCATTTATCTTAACATTTT CATCTCTGATTGAGCGTATTTTTTTGTTAGCTCTTTATCGCCCTACATTTAATCAATCTCATACATCACGTCTTATAATT GTGTCCTATAAATGTGCGGTACTTTTTTTTTAAACTGGGATGGTACTTTTCTATCACAAATAACAGCTCAATGCCTCAAA TACTCCTATATTCCATTCATCCTGCTTGAATTTTATAATTTACATATCCTTCTATGTGCTTGTCATTTTGTATGATGGAT CCAAGAAACTTAAATTGTGTTACAGTAAAAACTACAAAACATAAGAATGAAAACCTTGATTGTGGAGTCTAATGATAAAA AGAAATGCTATATATTGTTCTTCATACTTTTTGAGTATGAATTAAAAACTGAAATTTTCTGCTGGATTTTCATTTCCAGG TGAACTTGAGTTGCCATTTCTAGCACTACTCTTGGTGATTGTGGCTCCTTATGAGGCTATGAAATTCAGGTTAGCAAATG CATCTTGTTGAGGCAATCAATTCTACCTTCTTTTTTCTATTTTTTTTTTCAAGAAAAAAGCTTTAACATCATTCTCTTTG TCAGGGACACAAAAGAAGGTGCTTTTATTTCATTATTGATCGCAGTGTATTTGGCTTACCAGCATTTCTCAAGAACAAGC TTGCAGAAATCGTTTGATCAAGGTTCAGTTGTAGCTACCTTAGCTGTCATTTGTATCACTCTTGTATCGTTAATGCTTGT GCTCTGAGCTGGCGTTGGAATGATGTAAACTAAAAATATGATGTAAATAAGAATAGTAGATGATATATTATGAGTAAAAA AGGTTATGTAATATGTTAGGCACTCAATCTTGCACTTATTAATTTAAATAATGAAGTTACATTTGGTGTTCCTTATATAA ACTTGTATTTAGAACATGATATTCTGCATATATTTTAGTGAATGT
CDS sequence (LotjaGi4g1v0383800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAGTCATTCTGTGTGTCTTCCTCCGCTGCAACTGCACGACCCACTTTCTCTCTCCTCAAGTGCCACCACCCTTC ACCACCACGTGTCACTCTGCTCTCTCTTTCTCGCTCACCACCGTCGCCGTCGTCACTCTCCTTCTCCTCCTCCACCTTCA ACCCCCTCAAGCTCAGGTCTCCGATCGGCCATGGCGGAATCGGAAGCATGGTGAAGCCGAGGACCAGCAACAACAGAAGC TCAGGATTCCGTGTGCTTTGTTATGCTCGACCTTTCGCTCCTCCTAATCTGCAATGGATCGCCGCCGTTTCTTCTCTGGT TTTGATACTGGCAAAGGGAACCACCGTGCCGAAATCATTCATTGTTCCATTATTTGCTTTGCAAGCGCCTGCCGGTTTCA TTGCCTGGATAAAAGGTAGTTATGGGATGTGGGCAGCATTCTTGGCACTTCTGGTTCGTCTCTTCTTTTATATTCCTGGT GAACTTGAGTTGCCATTTCTAGCACTACTCTTGGTGATTGTGGCTCCTTATGAGGCTATGAAATTCAGGGACACAAAAGA AGGTGCTTTTATTTCATTATTGATCGCAGTGTATTTGGCTTACCAGCATTTCTCAAGAACAAGCTTGCAGAAATCGTTTG ATCAAGGTTCAGTTGTAGCTACCTTAGCTGTCATTTGTATCACTCTTGTATCGTTAATGCTTGTGCTCTGA
Protein sequence (LotjaGi4g1v0383800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQSFCVSSSAATARPTFSLLKCHHPSPPRVTLLSLSRSPPSPSSLSFSSSTFNPLKLRSPIGHGGIGSMVKPRTSNNRS SGFRVLCYARPFAPPNLQWIAAVSSLVLILAKGTTVPKSFIVPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPG ELELPFLALLLVIVAPYEAMKFRDTKEGAFISLLIAVYLAYQHFSRTSLQKSFDQGSVVATLAVICITLVSLMLVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 140 | 140 | - | – | |
| PANTHER | 67 | 235 | 169 | 1.6E-75 | – | |
| PANTHER | 67 | 235 | 169 | 1.6E-75 | ||
| Pfam | 85 | 227 | 143 | 1.1E-45 | ||
| TMHMM | 120 | 137 | 18 | - | – | |
| Phobius | 141 | 158 | 18 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 159 | 163 | 5 | - | – | |
| Phobius | 164 | 180 | 17 | - | – | |
| Phobius | 181 | 186 | 6 | - | – | |
| TMHMM | 187 | 206 | 20 | - | – | |
| Phobius | 187 | 204 | 18 | - | – | |
| Phobius | 205 | 215 | 11 | - | – | |
| TMHMM | 216 | 235 | 20 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| Phobius | 236 | 236 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0383800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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