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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0383900 |
| Transcript ID | LotjaGi4g1v0383900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G29380.1 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1; TrEMBL-Plants: tr|I3SY25|I3SY25_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76249445..76253973) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCAAGTGAATTATCATCCTTTTTATGCAGGTAGATTTGACAACCTTACTGTATTATTAAGAAGGCTTAATTGCACTT CTGATCCCTGATGTTTGGTCTTTGTGCAATTTACACCCCATTTGTTTTAATTGAGCGATTTTAGTCCCCTTTGTTTCAAT TTGTGACAATTGGATCCTGCCGTTAGCCTTCCATATAATTGCTAACGGTAGTTGCTATTTTCACCCCCCTTTTACTAAAT GTACCACCTAAACTAAATTAAAAAATTATTATTATTCTTTTATTTTATTTTTAAATTTGTATCTGCAACGTAAAATAAAA AATAAAACATCTTCTTCCTAAATCCCTTATTCTCCTCTCACTCATCTTTTTCTCTCCCCCACCCCATCCACCAAACCACA ACCGCTGCAAAAACGCCATCGCCAATCCCAACCCGATTTCTTATCTCCCTCACACCCATCCACCCAACCCGACTTCAAGA GCATGAGAGAGGAAGAGGGGATCCCGATTTGGAAGACGATGATTACCACCACCACCCGCATCAGCAGCAACAGTGGGAGG AAGTGGTGAAGCAAGTGCGCGGGGATCAAAAAGTGAACGCGATTTGAGCGATTTAGGGTTTGGTGAATTGGGGAAATAGT GGAACAGGGGGATTTGTAGGAGTTTAGCCCAGATCTGGGTTTGGGTGAGTTGTGGAAATGGAAAAGGTGAAGAGGAAGAA AGTATGTACAATATGATTAGGTTACCTTGTGGTTGTTGTTGGTCAGGGATGATGAAGGGAGGCCGAGGGCGGCACGTGAG GCGGGGAGGAAGGGGGCCGGAGAGAAGGTGGCGATTTGATGATGATGATGAAATTGAAATGGCTACTTTGAATCTGTCAT CAACCATGCACACACTGAGATTTGACGGAAAATAACACTTAAAACATGTGTTGGAACTGGGTTTGTTCAAGGTTCCAGAT CTGGGTTTGTAGGGTTTGACATGGATTGATGATGTAGATGATGATGTTGGGAGATGATGATGTTTAGAGATGATGATGAA TTGATGAGAGCTAGATTTGCCACCCCAACTATTAGATTTCACACCTCCAATTTTCGGATTTTCAAGTTCCGAATTATTTC GGAATCTTAGATTCCGAAATTAATTCGTGATTTTTTGTTCAAAATACATCTAACACCACACTTTTGAGTAAAAAACCACA CTTTTGAGTAAAAAACTGCTTCGGAAACCTTATTTCCGAAATATTTCGGTTTCCGTAAGTGGGGTGACATTTCTAATGAT TGGGGTGCCAAATCTAATGATCTGAATTGATGAAGATGATGAATCATTTAGTTTTTTTTTAATTACTGAAAATATTTTTA TTATTTAAAATAGTAAAATCCACGTAATATGGCTGTGTAAGCTAACGGCGTCAAGGATTTAACTGAGATTTGACGGAAAA CCCCAATTGTCACAAATTGGAACAAAGGGGATTAAAATCGCTCAATTAAAACAAAGGGGATCAAAATTGCACAAAGGTCA AACATCAGGAACCAAAAATGCAATTAAGCCTATTAAGAATCTTTCAGTTTCTTATTGTATTTTGAATAATTTTTTAGAAT ATCTTATTTATTCACTCCTAGTCGTACTTTTTCTCAATAGTTTATTGAAGAAAAAATGTATGTTAATCAAGTTCTGCAAA GTTCAACTTAGAACATTGAGATAAGGTAGCTTAAGCATGACATGATTAACCATGTTCTTGTTGGACAAGGCATAACTTGA GTTTCTTAAAGAAGGAATCTCTCTTTGAAAGCATTCTACATGAACTATTTATTAATTCAGAAACAGAACCTGGCTTATGT TGAGAAGCAGGGTATAAAAATAGAAGGGGGAGACAATATTCTTCATTACAAACCCTGAAAGGCAACAAAACAAAACCACA GTGCACACAGGCTTTACCTTTTTGTTCAGTCCCATAATACAGTAGGAAAGGAAAGAGTAGCACAAAAGAGAGAGAACGTT ACAGGGGATATCTATCATATCACCGTCATCTAGATTATATATACATTGCACTCACTCACCCTTTTGCCTTTTATCTTTGC CATGCAACCTTTTCCCCTCTGTTTGCTTGCTAATTTCAACTATCCAATGCCTCTTTTCTCAAGTTTGCCTATATTCTTTC TTCTGTCTCTGATCCAAGAAAGCTATGATTCTTCAAGATTTTGTTATTATATATAAAATATAAAAAAGAAGAAAATTCTT CTTCACAGGAACACATAAGGAGCAGGCCCTTGTTTCATAAATCTTAGCTTGGGAATATATCTCCAAATCAAGAAGGAAAC ATCTGCAATCCAAGCTCACTAGTTAACCTGCAGATATGGATCATAGACATTGGCACCTTGCATTGTTCTGCTTATCTCTT TTCTTTGGATCAGGTACCATCAATAAGGAGTAGCAATGTAGTATTTAGTTATTCTTTACCATGCATTGAAAAAAAAAATC AAATTAAATAAACTTCTGATTGAGAAAACATGCAATTGAAGCCATCTAGAGCTGTAGAGTCATAAATTTCTTTGGTTTAT GAAAAGCTTATTATATCTTTCATGATGATAATTTCCAATTCTAAGATCAAGCACACTTTTGGATTCAACTCTAATGAACT AGATTAGGTGCAACTTGCATTGGTAGAGAGTCAATTCAGAAAGTTGGTGTAGCTTACGTGCATCACAAAGTTATTGGAAT GAGTCCAGGAACTGCATCAATCATTCATGCTTTGTTAGCTAAGCAGCAATTACATAAATATTTTGGGTTGACTCTAGGTC AATTTAGCATGGTTTGAATATATTCACACACGCTTTTTCTTTGATCCAATTTTCACTCACTTTCTCTTCTTATCTCTGTC TTCTTTTCCTAACACATAACCACTTATCATATCTCTCATTTCTCTCCTATTCTTACCCGTATCAGGTGTGAGTGGATCTG TGGTGTAAAATTATATCTGGCCTTTTCTTTTCCAGGTCTAGGTACAGTCAAAGCATTGAGAAATGACTTGGGTAGTCAAT TAGATGATGTTCCTATTGTCAACCCTATAACTCCAGGCACAGGAAATCCATATCTAAACCCTACAACTCCAGGCACAGGA AATCCATATCTAAACCCTACAACACCTCAACCACCTGACACAACAGGGCAAACTCCCACAACCCCAAACATAACTCCCAC TACACCTACCCCTACTACCACAACACCAACCCCTACTACCACAACACCAACCCAGACCACTCCAGGAACAACTGGGGGTC AATGGTGTGTTGCTAGGCCAGATGCTTCAGACACTGCTCTACAGACTGCTCTTGACTATGCTTGTGGGTATGGAGGTGCA GACTGCTCAGCAATTCAGCCAGGAGCAAGCTGTTACGAACCAAACACTGTTCGTAACCATGCTTCGTATGCATTCAATGA GTATTACCAAAAGAATCCAGTACCTACCAGCTGTGATTTTGGAGGAACAGCAAGCCTTGCAAGCACTGATCCAAGTAAGA ATTTCATCAAAACAAAAAAGCTTGACGACCTCCTTGTGATCAATTTCTTGGCTATGGCCGCAGTATAAAGAATCGTTCTG TCTAAAGAATGGACAACAGTAATTTTTCATGTTTGTCATAAAAAATAACATCTAAACTCATTGTAGGTAGTGGGAGCTGC AGCTATGATGCATCATCACCCAAGACAACAAGGTGAGAAATTTGCACCATGCATATCTCCTTTCATCCTACAATGAATGT ATATACATCCTAATATATTATATTATCAATGCAGCCAGAGTCCACCAGTATATGTCAGCCCTCCAAGTCCAGTAACTATA ACTCCAACAGTGCCAACTCCGCCAGATACGACGATGTATGGTTCAGAACCAACAGAAAGCCCCAACACAGCTTCATCTGC TTTTAATTCCTTGCTGATGTTGTTTGCAAGTGGTCTCTTGGGTGCACTTCAACTAGCAAATTACTTCTAGAAGAGAAACA AGCTCCAGTAATTCTTTTAAGTGATAAGCTGGAATTCACTCAGTTTTCCAGGGGTTTTTGCAAATTTTCAAGGAGTCAGA GTCAAACAAGTCTTGCAATTAAACTTACTTCTACCTATCATCTATGTGTGGCTGTTAGTTGATTAAAAACAACAAAAAAG TGATAGAGCTAAAGGGATTTATAGGTTCTTGTAGACAGTTTTTCTGCAGTAGTAGCTTCTCTTCCATAGAGAATCCCTGT AATTAGTATCTGCTAGCATGCCATTTTATCTAGTGAACAGACTATATTACATTAAATCATTTTTAAAATGATCATTTTGG TCTGAAAAGGTTATTACTTATTATTCACAAGTTATTTTATTAGTTGCGTTGGACAAATCTACCTTATTCACAACAGGTTA CACGGTCATTCAACATACACATGCCTTGGTGATTTGTTAGACAATTTTGATTGAAATGCCCAAAAACTAAATTACACTAG ATGCAAGCAACAGAGAAACAAGTTAAACAAAGATAGGGTTAAATTGATT
CDS sequence (LotjaGi4g1v0383900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATAGACATTGGCACCTTGCATTGTTCTGCTTATCTCTTTTCTTTGGATCAGGTCTAGGTACAGTCAAAGCATT GAGAAATGACTTGGGTAGTCAATTAGATGATGTTCCTATTGTCAACCCTATAACTCCAGGCACAGGAAATCCATATCTAA ACCCTACAACTCCAGGCACAGGAAATCCATATCTAAACCCTACAACACCTCAACCACCTGACACAACAGGGCAAACTCCC ACAACCCCAAACATAACTCCCACTACACCTACCCCTACTACCACAACACCAACCCCTACTACCACAACACCAACCCAGAC CACTCCAGGAACAACTGGGGGTCAATGGTGTGTTGCTAGGCCAGATGCTTCAGACACTGCTCTACAGACTGCTCTTGACT ATGCTTGTGGGTATGGAGGTGCAGACTGCTCAGCAATTCAGCCAGGAGCAAGCTGTTACGAACCAAACACTGTTCGTAAC CATGCTTCGTATGCATTCAATGAGTATTACCAAAAGAATCCAGTACCTACCAGCTGTGATTTTGGAGGAACAGCAAGCCT TGCAAGCACTGATCCAAGTAGTGGGAGCTGCAGCTATGATGCATCATCACCCAAGACAACAAGCCAGAGTCCACCAGTAT ATGTCAGCCCTCCAAGTCCAGTAACTATAACTCCAACAGTGCCAACTCCGCCAGATACGACGATGTATGGTTCAGAACCA ACAGAAAGCCCCAACACAGCTTCATCTGCTTTTAATTCCTTGCTGATGTTGTTTGCAAGTGGTCTCTTGGGTGCACTTCA ACTAGCAAATTACTTCTAG
Protein sequence (LotjaGi4g1v0383900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHRHWHLALFCLSLFFGSGLGTVKALRNDLGSQLDDVPIVNPITPGTGNPYLNPTTPGTGNPYLNPTTPQPPDTTGQTP TTPNITPTTPTPTTTTPTPTTTTPTQTTPGTTGGQWCVARPDASDTALQTALDYACGYGGADCSAIQPGASCYEPNTVRN HASYAFNEYYQKNPVPTSCDFGGTASLASTDPSSGSCSYDASSPKTTSQSPPVYVSPPSPVTITPTVPTPPDTTMYGSEP TESPNTASSAFNSLLMLFASGLLGALQLANYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 249 | 223 | - | – | |
| PRINTS | 39 | 55 | 17 | 3.0E-10 | – | |
| MobiDBLite | 44 | 114 | 71 | - | – | |
| MobiDBLite | 47 | 64 | 18 | - | – | |
| PRINTS | 61 | 73 | 13 | 3.0E-10 | – | |
| PRINTS | 76 | 97 | 22 | 3.0E-10 | – | |
| PANTHER | 80 | 238 | 159 | 2.0E-62 | – | |
| PANTHER | 80 | 238 | 159 | 2.0E-62 | – | |
| MobiDBLite | 95 | 114 | 20 | - | – | |
| PRINTS | 97 | 113 | 17 | 3.0E-10 | – | |
| SMART | 115 | 199 | 85 | 2.9E-51 | ||
| Pfam | 115 | 186 | 72 | 2.7E-23 | ||
| MobiDBLite | 190 | 244 | 55 | - | – | |
| MobiDBLite | 190 | 210 | 21 | - | – | |
| PRINTS | 200 | 225 | 26 | 3.0E-10 | – | |
| MobiDBLite | 211 | 227 | 17 | - | – | |
| MobiDBLite | 228 | 244 | 17 | - | – | |
| Phobius | 250 | 269 | 20 | - | – | |
| Phobius | 270 | 272 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0383900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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