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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0385500 |
| Transcript ID | LotjaGi4g1v0385500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor GTPase-activating protein AGD12; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|I1K469|I1K469_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0385500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76383319..76387659) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAGGCTATCTATGCTCTATCTCTAGCCAATGTGGGACTTCTAACATAGGTGCCAACCTATTCTGACACAATAGAAA GAAAAGAAAAAAACATGTCGCCACCTTCCTCGTATCTTTTCCCTTTCTATCTGAGTTTCTTCGTATTTCAAACTCATGCA TTTGAATTCCTTAATTCACCGGTAATTTCATCTTCGTTTCTTTTTCTTTCTAATCCATATTCACATGCACACACGCACGC ATTTTTTAATTTCTCTCTGTTTCGTTCAATTGCTTGTTCTGTATTTTGTTGTTGATTTCTTATCGATAAGATTCATTTAA TTTCTGACATTTTGACAACCATATGAATTCTTTGATATTTGAGAAAATATTATGGGAAATGTGGTTTCAATACTTTTGAA TTTCTATGAACATTTCGGGATTTCGATCAAATGGAAAATGAAAATGCCCTGCCTATGATTTATTGATTGATTGCTTATGA ATGAATAATGTTGGTAAATGCATGTCTATGGAAAATCTTAATGTGTTATTGGATTTCATTGGTTTTTGGTTTCATTAGTC TTTAACCAGATATTTCTTTCTTCTTTAGGTAGTTTAGCTTGTCTTCCATTGTTGGAGTTGCACCTTGGATGATTGTGGGC ATCAAAGATGGCAATGAGCAATAAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTATGCCATGATCCTTTGATACTTAAC GCGATACTCTCTTTGCATTTACCTGATATACCTTCATCTGCAGTTTAATTAACTCTCCACTAGCACACAATCATCACAAC TCGCCTCATATAAGTGCTTATTCATAAGCTTCTTTGAAAAACTTATTGAAAAAAACTGAAAAGAGCTTATAGCTACCTGG AAGCCTTTATTCCTAAGCTTATCTGAGAAGCATATCAAAACAATCTAAAAAAAGGCTTATAGGTAGATAATCTATTTGCA TAAGTCTAACCAAACACATACTTACGTGTTATGCTATAAGATAAGTTCAAATAAGCTCTTACAAACACACCCGGAGTTTT GGCTTTATGTTCGCAAAAACAGGACTGGCTTAAGGCAAAGCTTGTCTTGCTTATTTTCATGTACAATTGTGAAATGCAAA GCTATTTTTACTTATTTTTCTTTGAGAGGTTGAATGATTGGCAGGTCTCTTACAGGTAAAAGAAGATTGAAGGATTTATT GGTCCAAAAAGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTAAGCGTATTCATCTTTATACA TGGCTTCTTCTTTTTTCTGGTTTATGGTCATGGTCAATGATTAGATTACTCAAAACCAAGGTTTGAGTGTTGAGTGTAGG AAATCAGCCACATGACATTTAATATGATGAAAAATTTGGAATGCATATTACCTTAACTGAAAATTCATTTTTTGAAATTC TTCTTCAGGTCAGCCAATATTGGAGTGTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTTGGTACTCATATTTC AAGGGTAACAATTCCAGATCCCTTACTTATGAAATATTTTCTTTCTGCTAATGTGGAATATTTAAACCGAGTTCCTTCTC CATTTGTCCTGAACAAATTTAATTTCTAATAACCTATATATGTGGCTAGTTATTTTCTATAACTTGTATTTGAACTAGGC TCAACTTGATTTGGTAAGAAGATCATCGATCACTATTATGTGGCTATACTCATGAAACAGCCTGGCCAACTTTGTATTAT GTTTGGTTGAATTATTTCCAACTTTACTACCTTATGCTTGTGAGGCATCCTCATTGTTACATTCCAAATAAGCATGCTCT GACATCTTCTGTAACTCAAATGAAAGATAAGCTAAAATTAGTGACCTATGAGATCAAAAGTAATTTTTTTGCAAATAAAG GTTTCTATTCAGCATAACACTAGTCATTCTGCTGTAGCTTTTGTCGTCAAATCACTACACAACTGCTAGACACAAGTTTT AGATGTAATAAGTGAACTGTGAAAGGAACCTCCAAAATTCCTAGTTAAGAAGCAAACTCAGTAATAATGCATAAAGCCAT TGAATTGGCATTCTGTGAAATGTACAACTAACATTTTAAGAAAGTTAGTCATGTCAATTACAATTCAGCTTCAGTTTATG TGGCATGAAATTAAGCCAAATCAACCTTCACTCGGGAGAGTTACAAGAAGCATCTTTTTGGGATCATGTTCTGTCATGTT CTTTGTTTTCAATAAGTTGTGCCTAAAAAGTTAATAGGGCATAGATGCTGAACTTCTTTTTTATGTTTGTCTTATCATGC ATTAAGCCTTGAGACATTTTTAATTACTTTCAGATTTTGTCTGTGACACTGGATGAATGGTCAAGTGATGAAATAGATGG AATGATGGAAGTAGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATATACAAAACCTGGAC CAGATGCCAGTCATGAGGAGCGCGCAAAATTCATCCGGTTAGACACATTTTCATATGATCATCTGACTTGTTATGAATTT CTGTCCTCTCACCCCAATTTTCTTTCTTCTTCTCATGTTTTTTTTTTTTATAATTTATTAGTCATTTATTTTCTTGATTT TGTTTGTACTCCTCTTCTGTTACACTTTTTAATCACAGTTCATTATCCTTGGTTGAGCACTGACTAATCAGCATGACAGT GCGATATTGTTCATTGTAGCACCATCAATGGTACCAACCTGGTCAATACTCAAGTTAGGAGTGACATTTTAATGATCATA AATTTGACTATTAAAATTCTTTAGACTAATCAGCCAATAAATCATCATAAATTCTTTAATTTAAAGAGTAAATTTTTTAT TTAGATTAATCCTAACCAGTGACAACTTTGACTGCAGGTCAAAGTACGAGCATCAAGAATTTTTGAAGCCTAGTTTGCGC ATTGTGTCAGGAAAAGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGATTATAGATAGTTTTCGAATTAC CAAGAGCTCACCGAACATGGTGATTATATTTTAGTTCCTTAGATTCTAAATGTTATTGTTTGTTGACCATAAGTTGATTT GGCATATGAATGTGAACCAGATGAAATTCTTTTAATCAAAGACAATTTCATAAACGTATGGATGCTGACCAAAAAGCACT TAGTGTTGTTTTAGTAGATAAGCTGCAATAAATGTTCTTTAGTCTGTTCCAAACGGGCTTACAGGCGTGTTTGCTTCGTG CATCCAACTTTACTACTCCGGTAGTAAAAGAAATGAAAATATTTTTTGCGAGTGGTTTTCTTGAATGTTTGACTGATATT GGAGGTGAAAACAGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCAATC AGAGATATGATGACAAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGGTTGGTTTTTCAAATTAGCATTCTTGGGA AACTATTGCTCTTTATTTTTTATTTTCAGCTGAAGAATATTGGATGCTGATAACTTTGTTTCTGAATTGACAATGGTGCT TTTGCTTTCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAATGAGGAACTTATGCTATCTGTT CCTCAGCAATTTGGACCAATTGATTTGGTAAGGTTGAATTTTATCTCAAGTATTGAATGAAAATCTTACCCTTATGGACT TAATTGCACTTTTAGTCCCTTCATTGTAACTGATGTGTGATATTGGTCCCTATAATTCTTTTAGCAAATTTAATCACTCC ATTTTAAAAACTGTTACAATCACTTCTATTCTATTATAAACTCTTACATTCCAACTTTTTAAGTGAAATCCTAACAAATG ACACACAATTTTGATGCTTTGCATTGCAGAAGGTGTTTGATCATGACTATTTTTCAGCTGATGACATAATGGGAGAAGCA GAGATTGATCTTCAACCCCTGATAACATCTGCAATGGCATTCGGAGATGCCGGAATGTTCGACGATATGCAGATAGGAAA ATGGCTGAAATCCAATGACAATGCACTTGTAGGAGATAGCACTGTCAACATTCTTGATGGTAAGGTTAAACAAGAGATGA CACTGAAGCTTCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCCCTTGATCATTAACGAGTACAT TACTGCTATTAACTTATCAATTGCTTTCTGTTGAATAAATATATTTTATTTTTCTCCTACTTTTCTAAACTTTCTGTTTC CATTTCTTTATTCAATTAAAC
CDS sequence (LotjaGi4g1v0385500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGAGCAATAAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGAAGGATTTATTGGTCCAAAA AGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTGTTTGTATGCTTAA AATGTTGCGGTGTGCACAGAAGTCTTGGTACTCATATTTCAAGGATTTTGTCTGTGACACTGGATGAATGGTCAAGTGAT GAAATAGATGGAATGATGGAAGTAGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATATAC AAAACCTGGACCAGATGCCAGTCATGAGGAGCGCGCAAAATTCATCCGGTCAAAGTACGAGCATCAAGAATTTTTGAAGC CTAGTTTGCGCATTGTGTCAGGAAAAGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGATTATAGATAGT TTTCGAATTACCAAGAGCTCACCGAACATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGG CACAAATTTAGCAATCAGAGATATGATGACAAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGACTGTTCAGACAA CTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAATGAGGAACTTATGCTATCTGTTCCTCAGCAATTTGGACCAATTGAT TTGAAGGTGTTTGATCATGACTATTTTTCAGCTGATGACATAATGGGAGAAGCAGAGATTGATCTTCAACCCCTGATAAC ATCTGCAATGGCATTCGGAGATGCCGGAATGTTCGACGATATGCAGATAGGAAAATGGCTGAAATCCAATGACAATGCAC TTGTAGGAGATAGCACTGTCAACATTCTTGATGGTAAGGTTAAACAAGAGATGACACTGAAGCTTCAGAACGTTGAATCT GGAGAATTAGACTTAGAACTCGAGTGGATACCCCTTGATCATTAA
Protein sequence (LotjaGi4g1v0385500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSNKRLEFGRPVSSKRRLKDLLVQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISRILSVTLDEWSSD EIDGMMEVGGNASANSIYEAYFPEGYTKPGPDASHEERAKFIRSKYEHQEFLKPSLRIVSGKGSTQSNRQSSFSKRIIDS FRITKSSPNMEGMVEFIGMLKVKVIKGTNLAIRDMMTSDPYVVLKLGQQTVQTTVVKSNLNPVWNEELMLSVPQQFGPID LKVFDHDYFSADDIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVGDSTVNILDGKVKQEMTLKLQNVES GELDLELEWIPLDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 138 | 136 | 1.6E-47 | ||
| PANTHER | 9 | 334 | 326 | 1.5E-191 | – | |
| PANTHER | 9 | 334 | 326 | 1.5E-191 | – | |
| SUPERFAMILY | 17 | 134 | 118 | 4.45E-40 | ||
| ProSiteProfiles | 17 | 131 | 115 | 26.588 | ||
| Pfam | 18 | 133 | 116 | 3.8E-38 | ||
| SMART | 18 | 139 | 122 | 5.2E-43 | ||
| CDD | 20 | 126 | 107 | 3.61839E-59 | – | |
| PRINTS | 29 | 48 | 20 | 9.2E-20 | ||
| PRINTS | 48 | 65 | 18 | 9.2E-20 | ||
| PRINTS | 69 | 90 | 22 | 9.2E-20 | ||
| SUPERFAMILY | 174 | 271 | 98 | 2.98E-28 | – | |
| Gene3D | 175 | 334 | 160 | 1.2E-29 | ||
| CDD | 177 | 321 | 145 | 1.35149E-77 | – | |
| Pfam | 179 | 268 | 90 | 2.9E-24 | ||
| SMART | 179 | 274 | 96 | 2.1E-19 | ||
| ProSiteProfiles | 180 | 259 | 80 | 15.992 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activator activity | Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. |
Expression pattern of LotjaGi4g1v0385500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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