Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0385500 |
| Transcript ID | LotjaGi4g1v0385500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor GTPase-activating protein AGD12; TAIR: AT4G21160.1 Calcium-dependent ARF-type GTPase activating protein family; Swiss-Prot: sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12; TrEMBL-Plants: tr|G7L835|G7L835_MEDTR ADP-ribosylation factor GTPase-activating protein AGD10; Found in the gene: LotjaGi4g1v0385500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76384453..76387549) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTCTTTGAGAGGTTGAATGATTGGCAGGTCTCTTACAGGTAAAAGAAGATTGAAGGATTTATTGGTCCAAAAAGATA ATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTAAGCGTATTCATCTTTATACATGGCTTCTTCTTTT TTCTGGTTTATGGTCATGGTCAATGATTAGATTACTCAAAACCAAGGTTTGAGTGTTGAGTGTAGGAAATCAGCCACATG ACATTTAATATGATGAAAAATTTGGAATGCATATTACCTTAACTGAAAATTCATTTTTTGAAATTCTTCTTCAGGTCAGC CAATATTGGAGTGTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTTGGTACTCATATTTCAAGGGTAACAATTC CAGATCCCTTACTTATGAAATATTTTCTTTCTGCTAATGTGGAATATTTAAACCGAGTTCCTTCTCCATTTGTCCTGAAC AAATTTAATTTCTAATAACCTATATATGTGGCTAGTTATTTTCTATAACTTGTATTTGAACTAGGCTCAACTTGATTTGG TAAGAAGATCATCGATCACTATTATGTGGCTATACTCATGAAACAGCCTGGCCAACTTTGTATTATGTTTGGTTGAATTA TTTCCAACTTTACTACCTTATGCTTGTGAGGCATCCTCATTGTTACATTCCAAATAAGCATGCTCTGACATCTTCTGTAA CTCAAATGAAAGATAAGCTAAAATTAGTGACCTATGAGATCAAAAGTAATTTTTTTGCAAATAAAGGTTTCTATTCAGCA TAACACTAGTCATTCTGCTGTAGCTTTTGTCGTCAAATCACTACACAACTGCTAGACACAAGTTTTAGATGTAATAAGTG AACTGTGAAAGGAACCTCCAAAATTCCTAGTTAAGAAGCAAACTCAGTAATAATGCATAAAGCCATTGAATTGGCATTCT GTGAAATGTACAACTAACATTTTAAGAAAGTTAGTCATGTCAATTACAATTCAGCTTCAGTTTATGTGGCATGAAATTAA GCCAAATCAACCTTCACTCGGGAGAGTTACAAGAAGCATCTTTTTGGGATCATGTTCTGTCATGTTCTTTGTTTTCAATA AGTTGTGCCTAAAAAGTTAATAGGGCATAGATGCTGAACTTCTTTTTTATGTTTGTCTTATCATGCATTAAGCCTTGAGA CATTTTTAATTACTTTCAGATTTTGTCTGTGACACTGGATGAATGGTCAAGTGATGAAATAGATGGAATGATGGAAGTAG GAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCAT GAGGAGCGCGCAAAATTCATCCGGTTAGACACATTTTCATATGATCATCTGACTTGTTATGAATTTCTGTCCTCTCACCC CAATTTTCTTTCTTCTTCTCATGTTTTTTTTTTTTATAATTTATTAGTCATTTATTTTCTTGATTTTGTTTGTACTCCTC TTCTGTTACACTTTTTAATCACAGTTCATTATCCTTGGTTGAGCACTGACTAATCAGCATGACAGTGCGATATTGTTCAT TGTAGCACCATCAATGGTACCAACCTGGTCAATACTCAAGTTAGGAGTGACATTTTAATGATCATAAATTTGACTATTAA AATTCTTTAGACTAATCAGCCAATAAATCATCATAAATTCTTTAATTTAAAGAGTAAATTTTTTATTTAGATTAATCCTA ACCAGTGACAACTTTGACTGCAGGTCAAAGTACGAGCATCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCAGGAAA AGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGATTATAGATAGTTTTCGAATTACCAAGAGCTCACCGA ACATGGTGATTATATTTTAGTTCCTTAGATTCTAAATGTTATTGTTTGTTGACCATAAGTTGATTTGGCATATGAATGTG AACCAGATGAAATTCTTTTAATCAAAGACAATTTCATAAACGTATGGATGCTGACCAAAAAGCACTTAGTGTTGTTTTAG TAGATAAGCTGCAATAAATGTTCTTTAGTCTGTTCCAAACGGGCTTACAGGCGTGTTTGCTTCGTGCATCCAACTTTACT ACTCCGGTAGTAAAAGAAATGAAAATATTTTTTGCGAGTGGTTTTCTTGAATGTTTGACTGATATTGGAGGTGAAAACAG GAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCAATCAGAGATATGATGAC AAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGGTTGGTTTTTCAAATTAGCATTCTTGGGAAACTATTGCTCTTT ATTTTTTATTTTCAGCTGAAGAATATTGGATGCTGATAACTTTGTTTCTGAATTGACAATGGTGCTTTTGCTTTCAGACT GTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAATGAGGAACTTATGCTATCTGTTCCTCAGCAATTTGG ACCAATTGATTTGGTAAGGTTGAATTTTATCTCAAGTATTGAATGAAAATCTTACCCTTATGGACTTAATTGCACTTTTA GTCCCTTCATTGTAACTGATGTGTGATATTGGTCCCTATAATTCTTTTAGCAAATTTAATCACTCCATTTTAAAAACTGT TACAATCACTTCTATTCTATTATAAACTCTTACATTCCAACTTTTTAAGTGAAATCCTAACAAATGACACACAATTTTGA TGCTTTGCATTGCAGAAGGTGTTTGATCATGACTATTTTTCAGCTGATGACATAATGGGAGAAGCAGAGATTGATCTTCA ACCCCTGATAACATCTGCAATGGCATTCGGAGATGCCGGAATGTTCGACGATATGCAGATAGGAAAATGGCTGAAATCCA ATGACAATGCACTTGTAGGAGATAGCACTGTCAACATTCTTGATGGTAAGGTTAAACAAGAGATGACACTGAAGCTTCAG AACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCCCTTGATCATTAA
CDS sequence (LotjaGi4g1v0385500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGCAGGTCTCTTACAGGTAAAAGAAGATTGAAGGATTTATTGGTCCAAAAAGATAATCGCTTTTGTGCTGATTG TAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTGTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTC TTGGTACTCATATTTCAAGGATTTTGTCTGTGACACTGGATGAATGGTCAAGTGATGAAATAGATGGAATGATGGAAGTA GGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCA TGAGGAGCGCGCAAAATTCATCCGGTCAAAGTACGAGCATCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCAGGAA AAGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGATTATAGATAGTTTTCGAATTACCAAGAGCTCACCG AACATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCAATCAGAGATAT GATGACAAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATC CTGTCTGGAATGAGGAACTTATGCTATCTGTTCCTCAGCAATTTGGACCAATTGATTTGAAGGTGTTTGATCATGACTAT TTTTCAGCTGATGACATAATGGGAGAAGCAGAGATTGATCTTCAACCCCTGATAACATCTGCAATGGCATTCGGAGATGC CGGAATGTTCGACGATATGCAGATAGGAAAATGGCTGAAATCCAATGACAATGCACTTGTAGGAGATAGCACTGTCAACA TTCTTGATGGTAAGGTTAAACAAGAGATGACACTGAAGCTTCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAG TGGATACCCCTTGATCATTAA
Protein sequence (LotjaGi4g1v0385500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGRSLTGKRRLKDLLVQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISRILSVTLDEWSSDEIDGMMEV GGNASANSIYEAYFPEGYTKPGPDASHEERAKFIRSKYEHQEFLKPSLRIVSGKGSTQSNRQSSFSKRIIDSFRITKSSP NMEGMVEFIGMLKVKVIKGTNLAIRDMMTSDPYVVLKLGQQTVQTTVVKSNLNPVWNEELMLSVPQQFGPIDLKVFDHDY FSADDIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVGDSTVNILDGKVKQEMTLKLQNVESGELDLELE WIPLDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 326 | 325 | 4.1E-189 | – | |
| PANTHER | 2 | 326 | 325 | 4.1E-189 | – | |
| Gene3D | 3 | 130 | 128 | 3.8E-47 | ||
| SUPERFAMILY | 9 | 126 | 118 | 4.58E-40 | ||
| ProSiteProfiles | 9 | 123 | 115 | 26.588 | ||
| Pfam | 10 | 125 | 116 | 3.6E-38 | ||
| SMART | 10 | 131 | 122 | 5.2E-43 | ||
| CDD | 12 | 118 | 107 | 2.4512E-59 | – | |
| PRINTS | 21 | 40 | 20 | 8.6E-20 | ||
| PRINTS | 40 | 57 | 18 | 8.6E-20 | ||
| PRINTS | 61 | 82 | 22 | 8.6E-20 | ||
| SUPERFAMILY | 166 | 263 | 98 | 2.83E-28 | – | |
| Gene3D | 167 | 326 | 160 | 1.2E-29 | ||
| CDD | 169 | 313 | 145 | 8.00134E-78 | – | |
| SMART | 171 | 266 | 96 | 2.1E-19 | ||
| Pfam | 171 | 260 | 90 | 2.8E-24 | ||
| ProSiteProfiles | 172 | 251 | 80 | 15.992 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activator activity | Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP. |
Expression pattern of LotjaGi4g1v0385500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…