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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0386700 |
| Transcript ID | LotjaGi4g1v0386700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT3G13510.1 carboxyl-terminal peptidase, putative (DUF239); Swiss-Prot: sp|P37491|YYBM_BACSU Uncharacterized protein YybM; TrEMBL-Plants: tr|A0A0B2PFX8|A0A0B2PFX8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0386700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76511116..76515276) extracted from Lotus japonicus Gifu genome v1.2.
TTTGATTTGATTAATTAAAGTGAGAACATAATGGGAAAGGAGAGAGAAAGAGAGAAATAAGGGTAAAAGAAAAAGGAAAA AGGTTTGCAATTTTAGGAAGTGGTGGAACAAAACAAAACACACTCTGTGCTGTGTAGTAGTGGGTTCCCCTTCAGAGAAA AGTGGGATAGAGTAGACCCACTGGGTTTTTCTTCTGTGGTTGAAGAAGGAGTAGAAGGAGGAGAAGGAAGAAGAGGGTGA AGAGTGAAGGGTCTCTCTGCAAGGGTTCTGTTTGTGTGTGTGTTTGGTTTGAAGTTTCAGGCTTAGAGGTTGATTTGATT TGAGTCTGGGTTTTGAAGGTGGTGTTGTTGTTATGGGTTCTTCTGGTTGTGGTGGTGCCACTAGTACTGTGGTTGTTGTT TTCTGCATATGGGGTCTCTTGATCTCATCACTCTCTTCTGCTGCTAGGCTCAGTGCTTCAAGGCAGAAGCTTGAGGTTAA CAAGCATTTGAATCGCTTGAACAAGCCTCCTGTTAAGACCATTCAGGTTTTTCCTTCAACCCTTTTCACCTTTTGTTTTG GGTTCTTCTCCTTTTTCCCTTATTCTTCTGTTTCTATCTGTGTTTTGGTGCATTTGTTTTGAAAATGAAAAAATAATCAC TTTTTTTTGCCCTATGATTTTCCCTTGTTTGCTGAAATGGTTCTGTATCTTTCAAACATTTTCACCTAATCATCTGAAGC AAGCTGCTACTACTGTTTTATTTTTCTAAGATTCTGAGATTTTTTTTTCTCTTTACTTTACATAAAAAAAATTGGATCTT GTGTGCTTGTTTTTACTTTCCTCTTTACACTCCTCCCTTCCCATCAAAAGGGAAAAAATCATAGCCCTTTTGATTGGATT TTGGAGTATTGAAGAAGGAACTGTGTAATGATTTGCCTCCACCCTTTCATAATTTTTTTTATCAGCTACTGTGTATAATA TAAAGTAGAAAGATACTAGCAAGGTTGGTTTCTATTTTGTTTAGATATCATTTCAGATGTTAATAGCATGATTTTGTTGT CATTGTTGCAGAGTCCAGATGGGGATATAATAGACTGTGTGCATGTTTCAAAGCAGCCAGCTTTTGACCATCCTTTCCTC AAAGATCACAAAATCCAGGTTCATTTTCTTCATTCAAGATCTGTTGTACACCTGTTCTATTTTTCTTTCTGTAAATCTCT CAATTTTATTCTAACTATATGCTTTGTTGATTAGATGAGACCTAGTTTCCATCCTGAAGGGCTTTTTGATGAGACCAAGT TATCTGAAAACAAGGAAAAAACAAGTGCTCCCATCACTCAGTTGTGGCATTCTATTGGTAAATGCCCTAAGGACACAATA CCTGTTAGGAGAACTAAAGAGGAGGATGTTCTTAGAGCAAGTTCAGTCAAAAGATATGGAAGGAAGAAGCACAGATCAAT CCCTAAGCCCAAGTCAGCAGAGCCTGATCTAATTAACCAGAGTGGTCATCAGGTAAAAATGTGTTTTGAGTGCCTTGTAG AGCTTTTTGATTTAATTAACAAGCATGACTGCATCAGCTTGTTTTTCCTCAGAATCAATTCTGGCACCCAGAAGCTACTC AAGAAGCTTCACAACAGAATTGATTCTGAAATTTTAGAAGGATTTCCTAACATGAGTAGCTTTGGACTGATTTTTCTTTG TTTTTGTTGTTGTTGATCAGCATGCAATAGCATATGTTCAAGGAGACAAGTTCTATGGAGCAAAGGCCACTATAAATGTG TGGGAACCCAAGATACAACAACCTAATGAGTTCAGCTTGTCTCAGGTGTGGATATTAGGAGGCACATTTGGTCAAGATCT TAACAGCATTGAAGCTGGTTGGCAGGTACTAAGAATCACTATGCATTTATTCTAGTGCGGAAACTGGGTACAAGTTCTTG ATTTGCGATCCTCATTCGCCTTGTAAATTCTTATGCCTGCATGTTCATGATTATAACAGGTTAGCCCAGATTTATATGGG GATAACAACACAAGGCTATTCACTTACTGGACGGTAAGCTTCTATTATTTTATCATTCCTAGCCTTGTGTGAGTTTCATT CTGTTCTAATTTTTATGTTCTGAGATTTCAATTTTGTTAATCGCGAACTCACTTGTTGCATTTTGCAGAGTGATGCATAT CAAGCTACAGGTTGCTACAATCTTCTATGCTCAGGGTTTATTCAAGTCAACAGTGATATAGCAATGGGTGCAAGCATTTC TCCGATTTCTTCATACCGAAATTCTCAGTATGATATCAGTATACTTATCTGGAAGGTATAGCCTAAAAAATCCTCACCTC AAATTATTAATCTGCAATAATAAGCCAGCTAAAGCAGCATCAATCTCATCATTTTGCCAACTAGGTATTTCGTATGTGGA CCATTGTAAATGTCCCTAGTGCTTGGCTTCTTTGAAACCTATCATCGAACCCCTATGGGTGTGAAAATGACACATGGAAG ATTCAATATGCCCTTGTTTGATAATTTAAAGCTATGAGAACCATGAGTTTTTCTTGTTTTCACTAATTAACTGGCTAGTG AAAGCTTTTCTTTACTTGGTACTATAAGCATTCATGGTGGCAGTGGCAGCACTGTAGCAATCATCTTTGTAACACAGATC CTAGGGAGATCTATTCCCAATTTCTTTTGACCATGATAGGATGGACCCCTATTTTAATTGATGACAGGACACTAATAATT CAGCCTTCAGGAACTTTGACTAGTCATGAATGGCTTATAGCTTGTTTGAATCAGCTTCATTTTTCTCAGAATCAATTTTA ACACCCAAAAATTTCTCATAGAAGCTTCTTCCCAAATTGATCTTGGCTTTAGAATCAATCATAGAAGGATTTCCTAACAT GCAATTATTCTGATACTTACAATTGCACAGCACATAACACATTAGAATTAAGGTGACCTCTCTATGAACAATGGATAGTC ATCCAAAAATGCTCTTTTCTAATGTTGGCAAACAAAACAAGATACTTGAAATCATGGAATTTGTTACTCCTATTAACTAG TTATTTTTATTTTCTATTTTTTTCCCTTGTAGGATCCAAAAGAGGGACACTGGTGGATGCAATTTGGGAATGACTATGTA TTAGGTTATTGGCCTGCTTTCCTGTTCTCATATTTGGCAGAGAGTGCTTCCATGATTGAATGGGGAGGAGAAGTTGTTAA TTCTCAGCCTGATGGTCACCACACCTCAACGCAAATGGGAAGTGGTCATTTTCCTGAAGAGGGATTTGGCAAAGCAAGCT ACTTTAGGAACATTCAAGTGGTTGATAGCTCCAATAATCTCAAAGCTCCTAAAGGTCTCGGCACCTATACCGAGGAATCA AACTGCTATGATGTTCAAACAGGTAGCAATGGGGATTGGGGGCATTTCTTCTACTATGGAGGCCCTGGTAAAAATGGAAA TTGTCGATGAGACTAACAAGAGATTAGAAGAGCCAAATGAAAAAAAAAATCACCCTTTTAGCATGTTTGGATCAGCATCT TTGTCATCAGAATCAATTCTGAAACATATTATAGAAGAGTTTCTGAACATGCACTTTGTATCAATCAATCCTAGTTTTAA AAACCTTTCTCTTCTATCTTGTATACCCTTCTGTAGTGGAAAGTTTTGACTGTTTTTTTTTTAATATTGATGAACTCTCC ATGCCAACTAGTGTGGGGAAGTGTGGCCAAGTTTCTTTAAAGCCTAAAGAAACAGGCCTTGATAACATGTTTGTATTTTA ATTGTTTGTCCACTCCTTGCTCTATAGGGAAAGAGTGTTTGTCAATTGCAATGTATTGAGTTAATTACCTAAACTAGAAC TTGCACTTGTATTGAGGTACTTCAACTTGTCTCATGATTTTAAATGATATAGTTTGGTACCATGCCCATGCTTAAAGAAT TGGTCAATTAAAGTAAGTGAAAAGTATGTGAGACCAATGAAAAGGAATTGAAAAGTGTGTGTGACCAATGAGAGAAAATG TGGTTTGCCTTAAGCAATAAATTAACTAAATAAAGATTCTAGAGGAAAAGGGGTTGCATGTGAGTGGCTGACATGACTTT TATTTGTGCATTTCAACTTTATGGAAAAAGGCTCCACCACCGCGCATTTTCAATCCCTTTCACCAACCTGCAAATTTCAA C
CDS sequence (LotjaGi4g1v0386700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTTCTGGTTGTGGTGGTGCCACTAGTACTGTGGTTGTTGTTTTCTGCATATGGGGTCTCTTGATCTCATCACT CTCTTCTGCTGCTAGGCTCAGTGCTTCAAGGCAGAAGCTTGAGGTTAACAAGCATTTGAATCGCTTGAACAAGCCTCCTG TTAAGACCATTCAGAGTCCAGATGGGGATATAATAGACTGTGTGCATGTTTCAAAGCAGCCAGCTTTTGACCATCCTTTC CTCAAAGATCACAAAATCCAGATGAGACCTAGTTTCCATCCTGAAGGGCTTTTTGATGAGACCAAGTTATCTGAAAACAA GGAAAAAACAAGTGCTCCCATCACTCAGTTGTGGCATTCTATTGGTAAATGCCCTAAGGACACAATACCTGTTAGGAGAA CTAAAGAGGAGGATGTTCTTAGAGCAAGTTCAGTCAAAAGATATGGAAGGAAGAAGCACAGATCAATCCCTAAGCCCAAG TCAGCAGAGCCTGATCTAATTAACCAGAGTGGTCATCAGCATGCAATAGCATATGTTCAAGGAGACAAGTTCTATGGAGC AAAGGCCACTATAAATGTGTGGGAACCCAAGATACAACAACCTAATGAGTTCAGCTTGTCTCAGGTGTGGATATTAGGAG GCACATTTGGTCAAGATCTTAACAGCATTGAAGCTGGTTGGCAGGTTAGCCCAGATTTATATGGGGATAACAACACAAGG CTATTCACTTACTGGACGAGTGATGCATATCAAGCTACAGGTTGCTACAATCTTCTATGCTCAGGGTTTATTCAAGTCAA CAGTGATATAGCAATGGGTGCAAGCATTTCTCCGATTTCTTCATACCGAAATTCTCAGTATGATATCAGTATACTTATCT GGAAGGATCCAAAAGAGGGACACTGGTGGATGCAATTTGGGAATGACTATGTATTAGGTTATTGGCCTGCTTTCCTGTTC TCATATTTGGCAGAGAGTGCTTCCATGATTGAATGGGGAGGAGAAGTTGTTAATTCTCAGCCTGATGGTCACCACACCTC AACGCAAATGGGAAGTGGTCATTTTCCTGAAGAGGGATTTGGCAAAGCAAGCTACTTTAGGAACATTCAAGTGGTTGATA GCTCCAATAATCTCAAAGCTCCTAAAGGTCTCGGCACCTATACCGAGGAATCAAACTGCTATGATGTTCAAACAGGTAGC AATGGGGATTGGGGGCATTTCTTCTACTATGGAGGCCCTGGTAAAAATGGAAATTGTCGATGA
Protein sequence (LotjaGi4g1v0386700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSGCGGATSTVVVVFCIWGLLISSLSSAARLSASRQKLEVNKHLNRLNKPPVKTIQSPDGDIIDCVHVSKQPAFDHPF LKDHKIQMRPSFHPEGLFDETKLSENKEKTSAPITQLWHSIGKCPKDTIPVRRTKEEDVLRASSVKRYGRKKHRSIPKPK SAEPDLINQSGHQHAIAYVQGDKFYGAKATINVWEPKIQQPNEFSLSQVWILGGTFGQDLNSIEAGWQVSPDLYGDNNTR LFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGASISPISSYRNSQYDISILIWKDPKEGHWWMQFGNDYVLGYWPAFLF SYLAESASMIEWGGEVVNSQPDGHHTSTQMGSGHFPEEGFGKASYFRNIQVVDSSNNLKAPKGLGTYTEESNCYDVQTGS NGDWGHFFYYGGPGKNGNCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 19 | 419 | 401 | 7.2E-253 | – | |
| PANTHER | 19 | 419 | 401 | 7.2E-253 | – | |
| Phobius | 25 | 30 | 6 | - | – | |
| Phobius | 31 | 420 | 390 | - | – | |
| Pfam | 56 | 178 | 123 | 3.6E-47 | ||
| Pfam | 191 | 413 | 223 | 6.7E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0386700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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