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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0387800 |
| Transcript ID | LotjaGi4g1v0387800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT4G35790.2 phospholipase D delta; Swiss-Prot: sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta; TrEMBL-Plants: tr|I1K497|I1K497_SOYBN Phospholipase D; Found in the gene: LotjaGi4g1v0387800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76625942..76631929) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAACATTTTTATTTTCTGTTCTTCCCTTTTTCTTTTTCATTTTCATTTTCATTTTTTGCCATTGGCTTCTTCTCTTT TCCCCAGAAAATATTCTTGTTCTTTTCATTCTGTTAAGAAAATTGAGACCTGAGAATTAGTTGAAGAGACATGTTGAATT TGCCATCATGCATGTTTTCCTTAGAACCGATGTTGATTTGAGTTAGCTATATATAAGGATCTTAAGGTGGTCAACACATT CAGTTTTGCGAAACCATCACATTACACATGATAAGATGCATCTATGATTTATTTTTGGTTCCTACGTGCATTTTTGGAAA TCTTTCTACAGTCTAAAGACAAAATCAATCCTCAGAAGAAGCTTATGTGGGCAGCTTCTGGATCCCATCATTGATTAAGT AAAAATAAGTTGATCCAAACATGATATCTTTAATTTAGAACTCATGCATCTTTATGAGTTCTCAGATTGAAATGGATGGT CGTGGTGACATTCCTCCCCAAAGGGAACCAGTTTTCTTACATGGTGATTTGGATATTTTGATAATAGAAGGCAAGTCACT TCCAAATTTAGATTTATCTACTGAAGCAGTTAGAAAATGCATCACTATGGGAAACATGTGCACACCTCCATTTGTAAAGG GACTCAAGACCCCTTCAGGAAAAGACAAGATCATAACCAGTGATCCTTATGTCTCTGTCTGCATAGCAGGAGCAACCATA GCTCAAACCAGAGTGATTTCTAACTGTGAGAACCCTTTATGGGATGAGCATTTTGTTGTTCCTGTTGCTCACCCTGCTCA AAAAGTGGAGTTCCTTGTGAAGGACAATGATGTTCTTGGTGCTGAGCTCATTGGAGTAGTGGAAATCCCTGTTGACAAAA TTTTGTCAGGAAATACAGTTAATGATTGGTTTCCCATCATTGGTCAACATGGAAATTGCTTAAGACCTTACCCTGAATTG CATATTTCTGTTCAGTATAAACCAGTTGGAGTGATTAGCCATTCAGAAAATGAGGATGGCATAACTAATGTAGGAGTTCC TAAAACATATTTCCCTCTTAGGAAAGGAGGGAATGTGACTTTATATCAAGATGCACATGTACCTGATGGCATGCTACCTG AAATTCAACTAGAAGGAGGAAAAGTGTATCAGCAAAATAAGTGTTGGGAAGATATGTGTCATGCAATGTTGGAAGCTCAC CACCTGATATATATTGTAGGATGGTCTGTTTATCACCCAGTGAAGCTTGTTAGAGAGCCAACAAAACCACTGCCTTCTGC TGGGGAGCTTTCAATTGGAGAGCTGTTGAAATACAAATCACAAGAAGGACTCAGAGTGGTCATGCTGATTTGGGATGATA AAACTTCACATGACAAGTTTCTTTTGAAAACAGTAATTCTCATTACCCTGATGAAAAAAACAAACATGTTTCTTAGCAGT TATATGGTGGACCATGTTAAATACTGGTTCACCCATGAATCGTGTATTTATTACTAATGTTATTTACAATATGCTTCTTT TGTGCTAAAAGTAAGTCTTTTAATTTAACTTGTGAACCAGATTTTCTTGGTCCACTATACACTTCTTTTTATAAGTTTAT ATATGATTCTCTCAACAACTTTGAGGGAATTTCTCTTCCTTTTTTTTTCTATATTGTTTTATCTTGAAATATTGCAGGGT GTTCTTGTCCCTTCCCTGTTCTACCAGTTAAATTGTAAATGTTAATTAGAAAATGTATCAGTATGACTATAACCTCACAT GGGTGGTTTTTAAATGACATGACACAATTTGATTGGTAGGATAGTGGAGGGGGCAACAAATGGAGACATAGGATTTTGGG TCCATCCATGAGATGAGATGCTAGGTTGTGAAAATTACTAAAACATATTTCTAAATGGAAAATTTACTACTTGGGTTATT TTAGACATAGTTGTTACTAATTGAGTATTGTTGTTTCATTTGATTTATAATTGATGCACATTATAACAATTGATTTTCCT GATTGCAGGAAGGTGTCATGCAGACTCATGATGAAGAAACTAAGAAGTTTTTTAAGAATTCCACTGTTCATTGTGTACTA TCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAACAACAGGCATGGAGTTCTTGCCCTTGAATTTATAACTATGT TGGACAGAGATTCTATTGCATACACTACCAGTATTGTTACTTCTTAACTAGAAGACTTCACAATAATTTACTGTCATTAA TATAATACATAGCAATGTACTTTTTCTTTTTAAGTTAAAACAAATACTAATTCTTTTGAAACTTTTGGTCCAGGTTGTAG GAACCCTCTTTACGCATCACCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGGAAAATAACTGCTTTC ATTGGTGGTCTTGATCTGTGTGATGGTAGATATGATACACCTGAACATCGACTTTTTAGTGATCTAGATTCAGTTTTTCA TAAAGACTTTCATAATCCTACGTTTCAGGTAAGTGATTATTGGAAATATTGAAGAATTCACATTAATTAAGTATAGAAAG AAAGTAGATTCACAAATACAAAGAGAAAATATAAGTAATTGGTTGTTTAGCTTCAACTGAGGTCTCGAGTTTAGTCTCTA TAAATGTATTTGCGTTAAATACTTGTTAGGGAAGACATAATTGCCTCTGCGGAATATACATGTGGTTTGAACTAAAAAAA CATAAGTAATTTGTTGAAATTGGGTTTTATATGATACAGATGAATTCGGGTGGACCAAGGCAGCCATGGCATGACTTACA TTGCAAAGTTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCGAAAAAATGGCGCG ACTTCAGGCTAAAAAAAGTGACAAATTGGCATGACGATGCTTTGCTAAAGATAGATCGGATTTCATGGATTCTCAGTCCA TCTTGCGGTCCCAATGGTGAAAATAATGTTCATGTAACTGAAGAAAATGATCCTGAGACTTGGAATGTGCAGGTATGGAG GAAACATGTTTGATAGAATCTGACGACGAATTTGGATCCTCTGCAGCTAAATGTTCTCTGCATCCCTCTGTAGCAATAAT ACTATATGCTTTTAGCTTAATCATGAAATCATCTTCGCCATTAAAGATAAATGAAGAATTAATATTTTGCAAGAGAGGGA TGCACTAAAGGAGAGGATCCTTATTCATCTGAGGACATGTCTCACCCTTCTTGATGAAATCCAATAAAGATTATGAACAA GCATTTAATACAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAAGGATTTCCAAAGGATATTGACAAAGCTAAGGATC AGGTGAGAACAAGGTTGTACGTGTGCTCGCTTGTACTCTAAATACTTAGTGTGTGTTTGGATACCAGCTGAGTACAACAT GAACAAACTTACATCTTAATTTATCAAGAGTTATGTTTATTTTTTGTCTCGATTTGGACCGGTACCAATAGATATTCAAA CATACATTTGGGAAGTTGTCTGATCATGAGTTCATTAACTTTGTATCATGATGCGGTTCAAGTTATGCTGGAAAAAAAAT TAGTATCAGTCTTTAAAGTCTAATATTAACTTGTTTTGCAGAACCTTTTATGTGGAAAAAATTTGAAAGTTGACCAAAGC ATCCACATTGCTTATGTAAAAGCAATAAGATCAGCTCAGCACTTCATATATATTGAGAATCAATATTTTCTGGGCTCCTC ATATCATTGGCCTTCATATAAAAATGCAGGTAGCTAAAGAAAATTTTCCAATACCATCATCTTTACATTACATTTGCTAG CTTTTGATTTTGCATTGTTAAAAAAATCAAATTGGTTATTAACTGCAAACTTACAAAGGTTGGTTTTTATTTCTTATGTT CAACAGGTGCAAATCACTTGATTCCCATGGAGTTGGCCTTAAAAATTGCAAGCAAGATCAGTGCACATGAACGTTTTTCT GTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACTAGTGCTTCTGTTCAAGAAATATTGTTCTGGCAGGTTAG ACCAATTTTCTAATCTATTCTAGTTATATTTTGTAGCCATAGTTTGGTAAGTAGATTAATAGCATGTTTGGATTCACATT CAGATCTTTCAGAATCAATTCTGCTACCAATAAAAGCTACCAAGAGTAGGTTCTTCAAGAAACAATTCTACTTCTAACAT GAAAAGTGACCGTGTATCCAACCATGCACTAAAAAGGAATATAATTGAACGTTAAATTATGTTCTAAATTTGTGAATATA AAAGTAGAATAGAAAACCAATTGGGTGGGGATTGTTCTAGCTTAAGTAAAGGTCTCAGTTCAAGTCACTTTAATACAGCT GCGTTAAATGGGTAAGTTTTGTCGCTCATGGTGCTCATATCTAGCTGGAACAAGATTTGACAACCTTTTACTTGAAATTT GAATGATTACAGGGACAAACAATGTCTATGATGTACAGGATTGTTGCAGATGCTCTTAAAAACGCAGGTCTCTCTAATCA GTACCATCCACAAGATTATCTCAATTTTTATTGTCTTGGAAAGAGAGAACCTCAATCCCCTGAAAGTCCATTAACATCAA ATCAACAATCTGAAAACCGTGCTTTGGTATGCTAAACTACCCTTCTATTTTCTTAACCAAATGTTAGCATGATCTTATAC TTCCACTATACCTACATTATGATCTTATGATAAATTCTCCCTCTTTCTTTAATCAGGTATCAGCTAAAAAATTCAGACGT TTTATGATTTATGTTCATGCCAAAGGAATGGTAGTTGATGATGAATATGTGATCATTGGATCAGCAAATATTAACCAGAG ATCATTGGATGGGTCAAGGGACACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAAGAAATCTC ATCCATATGGCCAGGTTTGAAGCTTAAGTTGAGTTTATTAATAAGCTAGAATAGCAGTACTTGGAAATGAGCATATTAAT CTAAATGTGAAAGTATATTTATATTCCCAGTTTATCCTTAACTTATTTTTTAGCACGTGATGCAAACACGTAAAATAGGG AACAGGGTTTCCTGTCGTCAGGGATATCTTGCTTTCACGCATTCAGCGAATTTTAACCATTGGCTCAAAAATTTCATTAA GATCAACGGTATACATGTCTTAAAATCTGAGTTGATCAATTAAGATCACTGCTCAAATTCATTTGCCGCATGAATGTATG AATTCCCGAATGCAGCGAATCCATTTCATATACAGCTATACAATTGGAGTTACTAATAGATCAATTCTATGGTGGATCAT GTTAGAAAAAAACTTACTAGTTGGTCAATTTTATGTTAAAAGTTAGTCCACCCTTGAATCTTGTTTCTACTTGTTATACC GATGCAGGTGTATGGTTACCGAATGTCACTGTGGGCTGAGCACATTGGTAGTCTTGATGATACTTTTGCAGAACCTCACA ACTTGGAATGTGTTAGACATGTCAACAACATTGCTAGACAAAATTGGCGCACATATGTGTCTGAAGAAGGAACCCATATG AGAGGACACTTGATGCAGTATCCAGTTAATATCAGCAGTGATGGAAAAGTCAGTGCCCTGAGTGGTCATGAATCTTTTCC TGATGTAGGTGGCAAAATACTTGGATCACATAATTCACTTCCAGATGCACTAACCACATGATGAGTCAATTTATACTCTT GAAATTATCTTTAGAAACATAATATTGTAACATTTTATAGTCCTGATGATGTAGCTAAAGGATTAATTTGATTATATATT CTAATGTAGCTAGAGATTCTCCTTTATTTCCTATAGTGATTGAATCTCTTCTTTTTCCTATCACATATTTTGATAATGGA AAGAATTGAAGAAACATGAAGCAAACAAATAGTTTCATTTTGCTAAGGGGGTGCATAATAAATGTGTG
CDS sequence (LotjaGi4g1v0387800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTCAGATTGAAATGGATGGTCGTGGTGACATTCCTCCCCAAAGGGAACCAGTTTTCTTACATGGTGATTTGGA TATTTTGATAATAGAAGGCAAGTCACTTCCAAATTTAGATTTATCTACTGAAGCAGTTAGAAAATGCATCACTATGGGAA ACATGTGCACACCTCCATTTGTAAAGGGACTCAAGACCCCTTCAGGAAAAGACAAGATCATAACCAGTGATCCTTATGTC TCTGTCTGCATAGCAGGAGCAACCATAGCTCAAACCAGAGTGATTTCTAACTGTGAGAACCCTTTATGGGATGAGCATTT TGTTGTTCCTGTTGCTCACCCTGCTCAAAAAGTGGAGTTCCTTGTGAAGGACAATGATGTTCTTGGTGCTGAGCTCATTG GAGTAGTGGAAATCCCTGTTGACAAAATTTTGTCAGGAAATACAGTTAATGATTGGTTTCCCATCATTGGTCAACATGGA AATTGCTTAAGACCTTACCCTGAATTGCATATTTCTGTTCAGTATAAACCAGTTGGAGTGATTAGCCATTCAGAAAATGA GGATGGCATAACTAATGTAGGAGTTCCTAAAACATATTTCCCTCTTAGGAAAGGAGGGAATGTGACTTTATATCAAGATG CACATGTACCTGATGGCATGCTACCTGAAATTCAACTAGAAGGAGGAAAAGTGTATCAGCAAAATAAGTGTTGGGAAGAT ATGTGTCATGCAATGTTGGAAGCTCACCACCTGATATATATTGTAGGATGGTCTGTTTATCACCCAGTGAAGCTTGTTAG AGAGCCAACAAAACCACTGCCTTCTGCTGGGGAGCTTTCAATTGGAGAGCTGTTGAAATACAAATCACAAGAAGGACTCA GAGTGGTCATGCTGATTTGGGATGATAAAACTTCACATGACAAGTTTCTTTTGAAAACAGAAGGTGTCATGCAGACTCAT GATGAAGAAACTAAGAAGTTTTTTAAGAATTCCACTGTTCATTGTGTACTATCTCCACGTTATGCAAGCAATAAGCTCAG TATTTTCAAACAACAGGTTGTAGGAACCCTCTTTACGCATCACCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGA ATAATCGGAAAATAACTGCTTTCATTGGTGGTCTTGATCTGTGTGATGGTAGATATGATACACCTGAACATCGACTTTTT AGTGATCTAGATTCAGTTTTTCATAAAGACTTTCATAATCCTACGTTTCAGATGAATTCGGGTGGACCAAGGCAGCCATG GCATGACTTACATTGCAAAGTTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCGA AAAAATGGCGCGACTTCAGGCTAAAAAAAGTGACAAATTGGCATGACGATGCTTTGCTAAAGATAGATCGGATTTCATGG ATTCTCAGTCCATCTTGCGGTCCCAATGGTGAAAATAATGTTCATGTAACTGAAGAAAATGATCCTGAGACTTGGAATGT GCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAAGGATTTCCAAAGGATATTGACAAAGCTAAGGATCAGAACCTTT TATGTGGAAAAAATTTGAAAGTTGACCAAAGCATCCACATTGCTTATGTAAAAGCAATAAGATCAGCTCAGCACTTCATA TATATTGAGAATCAATATTTTCTGGGCTCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCC CATGGAGTTGGCCTTAAAAATTGCAAGCAAGATCAGTGCACATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGC CAGAGGGGGTTCCAACTAGTGCTTCTGTTCAAGAAATATTGTTCTGGCAGGGACAAACAATGTCTATGATGTACAGGATT GTTGCAGATGCTCTTAAAAACGCAGGTCTCTCTAATCAGTACCATCCACAAGATTATCTCAATTTTTATTGTCTTGGAAA GAGAGAACCTCAATCCCCTGAAAGTCCATTAACATCAAATCAACAATCTGAAAACCGTGCTTTGGTATCAGCTAAAAAAT TCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGGTAGTTGATGATGAATATGTGATCATTGGATCAGCAAATATT AACCAGAGATCATTGGATGGGTCAAGGGACACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAA GAAATCTCATCCATATGGCCAGGTGTATGGTTACCGAATGTCACTGTGGGCTGAGCACATTGGTAGTCTTGATGATACTT TTGCAGAACCTCACAACTTGGAATGTGTTAGACATGTCAACAACATTGCTAGACAAAATTGGCGCACATATGTGTCTGAA GAAGGAACCCATATGAGAGGACACTTGATGCAGTATCCAGTTAATATCAGCAGTGATGGAAAAGTCAGTGCCCTGAGTGG TCATGAATCTTTTCCTGATGTAGGTGGCAAAATACTTGGATCACATAATTCACTTCCAGATGCACTAACCACATGA
Protein sequence (LotjaGi4g1v0387800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQIEMDGRGDIPPQREPVFLHGDLDILIIEGKSLPNLDLSTEAVRKCITMGNMCTPPFVKGLKTPSGKDKIITSDPYV SVCIAGATIAQTRVISNCENPLWDEHFVVPVAHPAQKVEFLVKDNDVLGAELIGVVEIPVDKILSGNTVNDWFPIIGQHG NCLRPYPELHISVQYKPVGVISHSENEDGITNVGVPKTYFPLRKGGNVTLYQDAHVPDGMLPEIQLEGGKVYQQNKCWED MCHAMLEAHHLIYIVGWSVYHPVKLVREPTKPLPSAGELSIGELLKYKSQEGLRVVMLIWDDKTSHDKFLLKTEGVMQTH DEETKKFFKNSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLF SDLDSVFHKDFHNPTFQMNSGGPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLKIDRISW ILSPSCGPNGENNVHVTEENDPETWNVQVFRSIDSGSVKGFPKDIDKAKDQNLLCGKNLKVDQSIHIAYVKAIRSAQHFI YIENQYFLGSSYHWPSYKNAGANHLIPMELALKIASKISAHERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYRI VADALKNAGLSNQYHPQDYLNFYCLGKREPQSPESPLTSNQQSENRALVSAKKFRRFMIYVHAKGMVVDDEYVIIGSANI NQRSLDGSRDTEIAMGAYQPKYTWTEKKSHPYGQVYGYRMSLWAEHIGSLDDTFAEPHNLECVRHVNNIARQNWRTYVSE EGTHMRGHLMQYPVNISSDGKVSALSGHESFPDVGGKILGSHNSLPDALTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 15 | 851 | 837 | 0.0 | ||
| PANTHER | 17 | 851 | 835 | 0.0 | – | |
| PANTHER | 17 | 851 | 835 | 0.0 | ||
| CDD | 19 | 175 | 157 | 5.18191E-60 | – | |
| SUPERFAMILY | 21 | 178 | 158 | 1.71E-25 | – | |
| Gene3D | 23 | 184 | 162 | 5.1E-21 | ||
| Pfam | 24 | 155 | 132 | 4.2E-25 | ||
| SMART | 25 | 152 | 128 | 6.1E-17 | ||
| ProSiteProfiles | 26 | 137 | 112 | 11.759 | ||
| SUPERFAMILY | 198 | 458 | 261 | 7.85E-27 | – | |
| Gene3D | 226 | 472 | 247 | 6.6E-20 | – | |
| SMART | 356 | 391 | 36 | 0.57 | ||
| ProSiteProfiles | 356 | 391 | 36 | 10.046 | ||
| Pfam | 357 | 391 | 35 | 8.7E-6 | ||
| Gene3D | 506 | 750 | 245 | 3.9E-22 | – | |
| SUPERFAMILY | 543 | 777 | 235 | 5.3E-27 | – | |
| Pfam | 551 | 733 | 183 | 3.6E-8 | ||
| SMART | 697 | 724 | 28 | 1.2E-8 | ||
| ProSiteProfiles | 697 | 724 | 28 | 14.597 | ||
| Pfam | 771 | 841 | 71 | 2.1E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi4g1v0387800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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