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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0389000 |
| Transcript ID | LotjaGi4g1v0389000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G10780.2 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9SAC4|FB2_ARATH F-box protein At1g10780; TrEMBL-Plants: tr|I1MDP3|I1MDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0389000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76738934..76741840) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGAAACAAGAAAGCTGAAACAAATTTTGAAAAAACAGACAACTAAAGAAGATGAAGGTGTCTGAAAAATCTCTAAAG TGGAAAGCGGGCTCCTACTAAATTTAAGCCGCGTGAAGCATCTAGATTCATTTTTTCAAAAATATAAATAGCAGTACTTG CATTCGTTTTCAAAATTCGAAACATCGAAATCAAAACCCTCATTTTCCAAAGTCCCGCTTCTTCTTCTCTCTCTCTTTCT TTCTTTCAATCCCCATTCCAGATTTAACAGAGACAGAGTGTGTGTGTGTGTGTGTGTGTGAGAATCTGTGTTTCTCTTCT CCACCCAGATCTTACTCCGATTCCTCATGGGTAATCTAATCTATCTTCCTCTCATCTTCATTTTTTTTAATCACTACCAG CTGCTTTAGGGTTTCACTCTCTATGCTGCAAATTTTATTTATTTCACAAATGCATGCTCCTTCATTAATCCCCTTCATTA TGCATCTACGATTTATGCCTATGTTTATTGTTACTGATCCATTCAGACTTTTTTTTTATTGTTTTTTGAGCTTTTATTTG TATAAATTTGTGTTGATAGTTTAGCTGATAATTAGTCATTAATTCATGTAGAAGTAGAATCTCTATCACCAAATACTTTA GATTTCGATGATTGGATCCATCTTATCCTAGTATTCTAATCAAAATGTTGAATTTCGTGTTTCTTACCCAATGTTTGTGG GCAATGTGCTTGAGAAGTCATGTTAGAATTATAATGCAAAATCATTCGCTTGATAGCGCGCCATTTTTGTGAGAATTTTG TTTATTTCACAATTGCAAGGTTTTGATTTTGAAAGATGGTGTGGAATCTGTGTACTTGTTATGTAATGACTAATTATGGT TGATTTATGCTTTCAGCAACTATTGAGTCTCTCCCTGATGCTGTTCTCCAATACATTTTGTCCCACATCAGCAATGCTCG CGATGTGGCGGCCTGCAATTGCGTTTCTAAGCGGTGGAGGGACGCTACGACGTCTGTTAGAGCACTCTACTTCCCTCGCA GCTCGTTTGACAACTATTCTTCTTCGGGTGGTGTTGGTGAAGCTTCTGACAACATTGTGAGAAGAATGGTGTCTAGGGTC TTGCGGTTGGAAGAGCTGATTGTGTATAGCCCTTTCTCCCCTTCTGGCTTGGCATCATGGCTCTCGCTTGTGGGGCTGTC TCTTCGCCAGCTCGAGCTTCGAATGGACAACCTTGCTGCCCATAATCAAGGCTCCCATGAGACCCCTTCAAAGTCGGAGT GTGTTGGTGCTGCGAGGAATTTGGAATCTCTGAAACTGTGGGGTGTCTTGATGGTGCATTCCCCAAAATGGGATGTTTTT CCCAATCTCAAGAACCTGGAAGTAATTGGTGCAAGATTGGAGGACCATGTGTTAACTGCGGTGCTTCAGGCGTGTCCTTT TCTCACCAGGTTGCTGCTGCTTGGATGTGAAGGGGTTAGATCAATCTCAATTGACCTGCCATACTTAGAGCAGTGTAAGC TAGATTTTTATGGCGTGGGGAACTGTTCACTTACCTTGAACTCCCCGAAAATTGAATCCCTTGAGATACAAGGTTGTAGC TGGATTAAGGTCTCTGAAACCAAGCATTTGAGGAACCTTTCAATATCCAATAGTTCAGGTAATTAATTATCTTAAGTGGT TAATAAATTTACATATTTCTCATTGCCCATATCTATTTTTCCCTTTGTTTCCAAGTAATCCCGTATAGGTTTGTCCTTTA GGATTTTGTTTAGCTAATAGCATGTTTAGATCAACTTTTCTTTTTCTCATAGGCAATTTTGACATCCAATAGTTACTTAC ATGAGCTTTTCATCTAATGTGATTTTGAAATCAATTATAGATGCATTCTCAAACATGCATTAAAATCATTATCCTCAAAC TTTTTGCTTCCACATTTTAAAGCTAGCTGCTTGTTTGGATTAAATTTTCTTTTTTCAGAATCAATTCTGATATCCAAAAG CTACTTACATCAGTTTCTCTTTCAATGTGATTTTGCTTCCAGGGAGAGTATATATGGTTGATTTTGGAAACCTTTCAGCT CTGGAGTTCCTGTCTATGAGGGGTGTCCAGTGGTGCTGGGATGCAATATGCAGAATGCTGAAATTGGCTAGTGAGGTGAA ACATCTCTACATGAAGGTTGAATTCACTGGGGACTTTGAGGCTCTTCAACCCTTTCCAGAGATTGATTTTGTTGATTTTT TCAACAGCCATCAAAAGCTGAGAAAGTTTGATATTCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGCCTCAAA CATGTAAAGTCATTTTAGTAACAACTTTGATATCACTTTTCTGATTGAGGATCTTTAATATCTCATTTATGAAGATACTT TGCTTATTTTACAGGTGGATTCAGGATTTGCGATACCATTTTTGGAGGAGGTTGTGATCACAGTGAGGTCACCGCTAAAT GCTGAACAGAAAATGAGTACTCTTGAATCCTTGTTGAAGTACGGGAAGAGTCTGAGGACCATGGTAATCAAGATTCTTGA GATGAAGGCTTGCCATAACAGCACTGATGATTTTTTTGATGAGATTTGCAGGTTCAGATACATGAACCACAACATAGTTC GAATACAATAAAGCTGATAAAGGGGCTACTATTTCTTGATGTATTCCTAATTTTAGACAGTTCATCTTGGTTTTCTGTTT CAGCTGAGCTGCTTAAACTGATTAGACTTTTATCTTTTGCGGGATCTGATTAATTTGTTCTATGTTTTGTTTTGAACTTC ATTTGAAAATCGACTCTTGGTTTAGAAAATTTGGAGAATGAGTTTATTTGGTATGATAAGTTTTTATGTTTGTTAATTAT AAAAATGTTACTTCATTTTTATTTTAT
CDS sequence (LotjaGi4g1v0389000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTATTGAGTCTCTCCCTGATGCTGTTCTCCAATACATTTTGTCCCACATCAGCAATGCTCGCGATGTGGCGGC CTGCAATTGCGTTTCTAAGCGGTGGAGGGACGCTACGACGTCTGTTAGAGCACTCTACTTCCCTCGCAGCTCGTTTGACA ACTATTCTTCTTCGGGTGGTGTTGGTGAAGCTTCTGACAACATTGTGAGAAGAATGGTGTCTAGGGTCTTGCGGTTGGAA GAGCTGATTGTGTATAGCCCTTTCTCCCCTTCTGGCTTGGCATCATGGCTCTCGCTTGTGGGGCTGTCTCTTCGCCAGCT CGAGCTTCGAATGGACAACCTTGCTGCCCATAATCAAGGCTCCCATGAGACCCCTTCAAAGTCGGAGTGTGTTGGTGCTG CGAGGAATTTGGAATCTCTGAAACTGTGGGGTGTCTTGATGGTGCATTCCCCAAAATGGGATGTTTTTCCCAATCTCAAG AACCTGGAAGTAATTGGTGCAAGATTGGAGGACCATGTGTTAACTGCGGTGCTTCAGGCGTGTCCTTTTCTCACCAGGTT GCTGCTGCTTGGATGTGAAGGGGTTAGATCAATCTCAATTGACCTGCCATACTTAGAGCAGTGTAAGCTAGATTTTTATG GCGTGGGGAACTGTTCACTTACCTTGAACTCCCCGAAAATTGAATCCCTTGAGATACAAGGTTGTAGCTGGATTAAGGTC TCTGAAACCAAGCATTTGAGGAACCTTTCAATATCCAATAGTTCAGGGAGAGTATATATGGTTGATTTTGGAAACCTTTC AGCTCTGGAGTTCCTGTCTATGAGGGGTGTCCAGTGGTGCTGGGATGCAATATGCAGAATGCTGAAATTGGCTAGTGAGG TGAAACATCTCTACATGAAGGTTGAATTCACTGGGGACTTTGAGGCTCTTCAACCCTTTCCAGAGATTGATTTTGTTGAT TTTTTCAACAGCCATCAAAAGCTGAGAAAGTTTGATATTCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGCCT CAAACATGTGGATTCAGGATTTGCGATACCATTTTTGGAGGAGGTTGTGATCACAGTGAGGTCACCGCTAAATGCTGAAC AGAAAATGAGTACTCTTGAATCCTTGTTGAAGTACGGGAAGAGTCTGAGGACCATGGTAATCAAGATTCTTGAGATGAAG GCTTGCCATAACAGCACTGATGATTTTTTTGATGAGATTTGCAGGTTCAGATACATGAACCACAACATAGTTCGAATACA ATAA
Protein sequence (LotjaGi4g1v0389000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATIESLPDAVLQYILSHISNARDVAACNCVSKRWRDATTSVRALYFPRSSFDNYSSSGGVGEASDNIVRRMVSRVLRLE ELIVYSPFSPSGLASWLSLVGLSLRQLELRMDNLAAHNQGSHETPSKSECVGAARNLESLKLWGVLMVHSPKWDVFPNLK NLEVIGARLEDHVLTAVLQACPFLTRLLLLGCEGVRSISIDLPYLEQCKLDFYGVGNCSLTLNSPKIESLEIQGCSWIKV SETKHLRNLSISNSSGRVYMVDFGNLSALEFLSMRGVQWCWDAICRMLKLASEVKHLYMKVEFTGDFEALQPFPEIDFVD FFNSHQKLRKFDIHGAMFAALCQKNSLKHVDSGFAIPFLEEVVITVRSPLNAEQKMSTLESLLKYGKSLRTMVIKILEMK ACHNSTDDFFDEICRFRYMNHNIVRIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 304 | 304 | 1.6E-28 | ||
| PANTHER | 4 | 427 | 424 | 8.7E-191 | – | |
| PANTHER | 4 | 427 | 424 | 8.7E-191 | – | |
| Pfam | 4 | 46 | 43 | 1.0E-7 | ||
| SUPERFAMILY | 4 | 47 | 44 | 4.06E-9 | ||
| SUPERFAMILY | 133 | 349 | 217 | 5.49E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0389000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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