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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0389400 |
| Transcript ID | LotjaGi4g1v0389400.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A151R503|A0A151R503_CAJCA UDP-arabinose 4-epimerase 1; Found in the gene: LotjaGi4g1v0389400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76774408..76777578) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAAGATGCCCTAAAATGGTAGATCTATGATACAAAAATACTATTTCTTACCATTTATTCAGCTAAAGAATGAAGCTT GGGTACGTTTAGTTGGTGTTTGCCAGTGCTGTCAGAAAGATACCACCAAGATAGAAATAGATTAGAGGTGAAAAGATAGA GGTAGGTTTTATATGTATGCATGAATTAGAGGTGTTAGTTACTATGGTGTTCGTTACTTATGGACCTAACTCTTGTGCGG TTTCTCTTTTATTCATCTTGCTGATTCTTCTTTTCTATTTTTCGTTTCCCCCTTTTCAGTTTTCCGTCCATGAACCCGGG GTCACTCATGTTTTAGTAACAGGGGGTGCAGGCTTTATTGGCTCACACGCAGCTCTACGACTTCTCAAGGATAACTATCG TGTTACCATAGTAGTATGTCTATTTATTAAATGGACTGGTTCTCTGTTAAAGCCAATTGCACTGATTGATGTGGTTGCTA CAAAGATAACAAATTTTCTTTATGACAGGACAATCTTTCACGAGGAAATTTGGGTGCAGTCAGGGTTCTCCAAAACTTAT TTCCAGAACCTGGAAGGCTTCAATTCATATACGCTGACTTGGGAGATGCAAAATCTGTATCCTTTACACTTTTGTTACAA GAAATGTTTTGGTTTCACACTTTTACTTTTATTGGTGCATATATAGGCCTAGAAAGATTGTTTACTTGACTGGTTATCAG GTTAATAAAATATTTTTGGAGAACAAATTTGATGCTGTGATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACTGT GGATCCTCTGAAGTAAGTGCTTCTGGATTTTGTTCAGGCATGTTAATTTTAGTTGAATAAAATTGTGGAAAGTTGCACTT TGCTCAGTTTCACTATCTATATCTAAGTAGCAAATCACATAGTACAAGTTGACATGTTGTAGATTATTTGAACTCAGGTA CAGATATTTCTAATATATTCTTGCATTTGTCTATAAAGTGACGCGTCGGGGCACATAAATTGTGATGCATGATGTCTGTA TTTCTTAATATATTGGTTAAATATTGAGTTTTTTATTTAGAGTTCTTCATTGTGGATAAGAGCTACTAATACAAACCAAG CTTAGTTGTTGATATTATGTTTGCAATTGCAATGAGTACCAGACTAGTAACACATAGTAAGACCATTTTCTAAAATTACC TTATCAAGAGGGTCAAAAGCTGCAAGTGAAATCACAGTACTGTTGCAACCAAATTCAGGTTTTTCTTTGAGAGTATGCCC GTATTCTCCACTCTAATGAATGCATTATGCAATTGATATTGTTTGTAATTAACTAGTTATGATTTAGTTGAGAGTTTGAT CCAATTCTAGTTACGTGAGTGGTCTGGAATGGTTTGGTTTCATTTGCCTCAGTTTTATTATGATATTTATTTAATTTATT TCTAATTTTCATATTTGTCAGGTATTATCACAATATTACATCAAATACCTTGTTGGTATTGGAGTCAATGGCCAAACATG ATGTGAAGACATTGATCTATTCAAGTACATGTGCAACATATGGGGAACCTGAGAAGATGCCTATTACAGAAGAAACACCG CAGGTAGGAAATTTTGTTTTTTTTTTTCCCTTGTATCCTGAATTAGCTTAATGCCTGTGGAGATTTAGTTTTAAAATTGA TTTTCTTTTTCTATATATCAGTCCCCCATCAATCCATATGGGAAAGCCAAGAAAATGGCTGAAGATATCATCCTTGATTT TTCTAAAAATTCAGACATGGCAGTAATGATTCTAAGGTTTGTCTTTTACATCTATATTTTCCCTTCATTTCAGATATTAT CATTATCTAATTCCATATTCCTTTTGTTGCTTAAGCTATGAGTGGTTCTTATTATATCTGAAATATTAAGAGCTCTTGCA AAAGGGTGCCATGTTTGTGCTATGGATGCATTCAATCAATACACATTTCTCTTTGATTTCTCTTTTTCCCTCATTTTTAA ATGTTGTGTGGTCAGGTGTGTTGGGAAGATTTTATGGAGTCCCCGGACTCATTTATTTGCATCTACCAAAACAAAATAAA TAACATTTTTACTTTTGTATCTAATTATCTATTGGTGTGACAACTTTCCACTTCATGTTCTTTTAACTGTTGATATACAT TTTGAGATCTGACTACTTTTGGAAAGATGCCATTGGAACTTGATAATATTTCTGAATTAGCTACACTGAATTACTGATAA TTATTGGTAATTTTCTTTTTAAAACCACCAGATACTTTAATGTGATTGGATCAGATCCTGAGGGAAGATTGGGTGAGGCT CCTAGACCTGAACTGCGAGAGCAAGGTCGGATATCAGGTGCCTGCTTTGATGCGGCTCGTGGCATTATACCAGGCTTAAA GGTATGCTAATGTTTTCGCTTTGTTTTTTTTGGCTAGAAAAGGATTCTTCACAGAAATCAAGGATTACAAGAATCGGTGT TGTTAAGGCGATTAGCAGGGTATATTTGATGTGTTTCTAGGAGAACCAGTAAGAGGCAACTAGTTAAATGCTATATTGTC CAGAGTTATCAAACTATTGATAATTCTTCTATTTTCCATACATTTGACCTAGAGGAGCAGACTACAAGACAAATAATATC AAATGTAAGAAGTTCTTGAAAGTTGAAAGTGTTGTTACTTTGCAGGTTAGAGGAACAGACTATAAGACAAGTGATGGAAC TTGCATACGAGATTACATTGATGTGACTGACCTTGTTGATGCTCATGTGAAAGCTCTTGAAAAGGCACAACCTAGTAAAG TTGGGATCTACAATGTTGGCACTGGAAAGGGTAGGTTAAATAAACACTTTGATTATGAACATAGTGCATTGATTTTCTTA ACTTTGCATATTTCTTAAATTAACTGGTTCTTCTGTTTACCAGGTAGTTCAGTGAAGGAGTTTGTGGAAGCTTGCAAGAA GGCTACAGGGGTGGACATTAAAGTGGAATTCCTTCCTCGCCGTCCCGGTGATTACGCTGAGGTGTATAGTGACCCGGAAA AGATCAAACGCGAACTGAATTGGACTGCAAAGCACATTGTTCTTCAAGAGAGTTTAGGGATTGCATGGAGATGGCAGAAA TCACACCGTGATGGTTATGGGGTTTCAAATGCAGTAGTTTGAATGATTTAG
CDS sequence (LotjaGi4g1v0389400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACTGTGGATCCTCTGAAGTATTATCACAATATTACATCAAATAC CTTGTTGGTATTGGAGTCAATGGCCAAACATGATGTGAAGACATTGATCTATTCAAGTACATGTGCAACATATGGGGAAC CTGAGAAGATGCCTATTACAGAAGAAACACCGCAGTCCCCCATCAATCCATATGGGAAAGCCAAGAAAATGGCTGAAGAT ATCATCCTTGATTTTTCTAAAAATTCAGACATGGCAGTAATGATTCTAAGATACTTTAATGTGATTGGATCAGATCCTGA GGGAAGATTGGGTGAGGCTCCTAGACCTGAACTGCGAGAGCAAGGTCGGATATCAGGTGCCTGCTTTGATGCGGCTCGTG GCATTATACCAGGCTTAAAGGTTAGAGGAACAGACTATAAGACAAGTGATGGAACTTGCATACGAGATTACATTGATGTG ACTGACCTTGTTGATGCTCATGTGAAAGCTCTTGAAAAGGCACAACCTAGTAAAGTTGGGATCTACAATGTTGGCACTGG AAAGGGTAGTTCAGTGAAGGAGTTTGTGGAAGCTTGCAAGAAGGCTACAGGGGTGGACATTAAAGTGGAATTCCTTCCTC GCCGTCCCGGTGATTACGCTGAGGTGTATAGTGACCCGGAAAAGATCAAACGCGAACTGAATTGGACTGCAAAGCACATT GTTCTTCAAGAGAGTTTAGGGATTGCATGGAGATGGCAGAAATCACACCGTGATGGTTATGGGGTTTCAAATGCAGTAGT TTGA
Protein sequence (LotjaGi4g1v0389400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFAAVAYVGESTVDPLKYYHNITSNTLLVLESMAKHDVKTLIYSSTCATYGEPEKMPITEETPQSPINPYGKAKKMAED IILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIIPGLKVRGTDYKTSDGTCIRDYIDV TDLVDAHVKALEKAQPSKVGIYNVGTGKGSSVKEFVEACKKATGVDIKVEFLPRRPGDYAEVYSDPEKIKRELNWTAKHI VLQESLGIAWRWQKSHRDGYGVSNAVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 197 | 197 | 7.3E-87 | – | |
| PANTHER | 1 | 264 | 264 | 3.3E-172 | – | |
| PANTHER | 1 | 264 | 264 | 3.3E-172 | – | |
| TIGRFAM | 1 | 259 | 259 | 9.1E-92 | ||
| Pfam | 1 | 238 | 238 | 4.7E-31 | ||
| SUPERFAMILY | 1 | 259 | 259 | 5.44E-60 | ||
| Gene3D | 115 | 253 | 139 | 7.3E-87 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | UDP-glucose 4-epimerase activity | Catalysis of the reaction: UDP-glucose = UDP-galactose. | ||
| Biological process | Galactose metabolic process | The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. |
Expression pattern of LotjaGi4g1v0389400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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