Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0390500 |
| Transcript ID | LotjaGi4g1v0390500.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|I1K4D0|I1K4D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76917556..76924348) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTAGCATTACATTGACTGTATTAGAATTGTTGATACGTGTTGAAGACAATATTTGTAGTGTTGAGGTTTTGAGACCC GCATGTCTTAGTTGTGTTGTTGTAGTTTGACTTCATGATTCGGCACATTTATATTCATGCATAACATTATCGATTCAATG TTTCTATGTTTTTATTATCTATGTAAATGTCTGCTGCATTTTCTCTATTTCCCTTACGTAATATATTTGGTTGCAAACAT AACTGCTTTTAACATAACCATTTTGATGGCTTTGGTATTATATTTAAATCAATGACAGGACAACAAAGATGCTCGTCATG TGAAAACGTATGAGGTTGCTCTGAAGGATAAAGATTTTGTTGAGGGCCCATGGTCCCAGAATAACCTTGATAATGGGGCT GATTTATTGATACCAGTTCCCTCTCCTCTTTGTGGTGTGCTTATTATTGGTGAAGAAACCATAGTATACTGTAGTGCCAA TGCTTTCAAAGCTATTCCAATCAGACCTGTATGTAAAAGAACTGTATCTGCTACTTCCATTTAAATCATCTGCTGTGAAA TTTTAAATTTGATGAACTGTATCTATATTACAAAGTTTTTGGAGTTATCTAAATTATACCTTTTGATCTGCTTTTCAGTC AATTACAAAAGCATACGGAAGAGTTGATCCTGATGGTTCTAGATATTTACTTGGTGACCATACTGGGTTGCTTAGTCTGC TTGTAATAACCCATGAGAAAGAAAAGTAAGTGGTCACCCAATGTCTTGTTTTACTGTTGGTAATAATCCTTAGATATTAA TCTTCCCTGTGCATAAATTTTTTGATTATGGTAATAATCTGTATTTTTTCTTAAAAAACCAACAATTCAGTATTATAACT GCTGAAAATTATGGTTTGTCATGTACATTTATTTTGTAGGGTTACAGGACTGAAAATTGAGCCCCTTGGGGAGACTTCCA TTGCATCTACACTATCATACCTTGATAATGCATTTGTCTACATTGGTTCAAGTTATGGAGATTCTCAGGTGGGTTAATAA ATTTAAACAATGTTGTATAAATTGTTATCGACTCCATATTGATATGATAGTTTTTTATCCAAAATTCCGACTCCCCTAAG TCCAACCACTTCTTTTGAACTTAGAATGACGACTCTGAATTATGCATTATTTGTATGTGAAGTAGAGTCTGCATGCTATG TCGGAAGTTGAGTAATTGCCCATGTATTGTATTGAGAATTCGAACTCTTGAAAGTTCTAGTTTGAACTTTAAAGGTAGTT CTGAAAACATGGTTTGTTTATTTAGTAAATGGCAAGATTGTCAAACTCAAGTTTAGATATACTCAATTTGTAAATTTGAA GAGACTTTTGAAATGTTACTTAAAAATATTTTATCACCCCACACATAATTTAACAGCATATATATCGCAAATATTTAGGA TTTCAACTTCATGACAAACAAAATGACAATAATAAAGTGAAAACAAGTCAACAAGACAATATAAGGATGAACCGCCTCCT GTTCTTAGCTTCTTAACCAAAATCTGTATCATGTAGCTTTTGCAGTACTTGATGTATTTTCTTCACTGTTTACCCTGGTT ATCTCTAGGTGTTTACTTTTACTTCCATATTCAGACATGATAACATATTAACAATTTCTGATGGATGGAATACAGCTTAT AAAACTAAATGTACAGCCTGATGCAAAAGGCTCTTATGTGGATGTTTTGGAAAGGTATGTCAATTTGGGGCCAATTGTTG ATTTCTGTGTGGTAGACCTTGAAAGGCAAGGCCAAGGTCAGGTTGTAACCTGCTCTGGAGCTTACAAGGATGGCTCTCTT CGTGTTGTCCGTAATGGAATAGGGATCAATGAACAGGTCAGTTCCCTTCCTATCGGCCCAGTGTGGGGCCTCTGCACCTG AGACATTTAAAAAAGATAAATTAAACTTTATCAAACAAAGCATGCTTTGTAAAATAAATACTATTTCATTGATGTAGGCA TCTGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTAAGATCCTCAACAGATGATCCTTTTGACACTTTTCTGGTTGT TAGTTTCATAAGAGATACGAGAATCTTAGCAATGAACATTGAGGATGAGCTGGAAGAAATTGAGATTGAGGGATTCTGTT CTCTAGTACAGACATTGTTTTGCCATGATGCAGTTCACAATCAACTTGTACAAGTAGGTTCTGACCTTATTTTCCTGCTT TGGTGTTTTTTTTCTTTTCTTGTTGATTTCGACACCTGCATCTCTCTATCTAACTCTTCGAAAAATGGATGCTGAGAAAG CTATTCAATCTGCAGAATTGTTGTCATATGAATTTACAATCAAAATTAATTAGGCTTTCTATTTATTATGTTTTTCTACA TGATTGCTTTCCTTGAAGTTTTAAATTGTTTCTCAACTAATCGAATATTAATTTAAAAAATGCACTGTTAGGATCCAATT GCAAGGTAATATTGGAACTATGCGATTCTAGTGTGGGGTTTATAAGGCCTTGTGCTCTCCACAACAGCTAGCTTTTGTGG TATGATGCTCCCAAGGTTCTTAACAATTAGTATCTGAGCCTTCCACCATGTCTCTCAACTAAAGACGAGCGGCATGGGTG GTGATGCCGGCATTGCACTGTTTGCCTGGGGACTAATCAATGGGCTAGTGCACTGCCAGTCTACGTGGGCATTGGGGCTT TAGAGCGTGGTGTGATGTTAGGATCCAATTGCAAGGAATGAGACTTGAGTCCCATATTGGAAATATAAGATTCTAGTGTG GGGTTTATAAGGCCTTGAGATATCCAACGACAATGGCTAGCCTTTGTGGTATGGTTCTCTCAAGGTTTTAACATGTATTA CCCTTCCGTATTACAAATACCCATTCATTGTTTTAAACTTTTACATTAAGATTAATGGCATGTTTAATCTTGAGATCTGT ACAAAAGTTACCTGGAGTGTGAACAGATGCACATATGTGTTTTCAATCTTAACAAAGTCATTTAAAAAAAAAAGTTTTAT TTCCCCATATCTTTACTTACTCAAGACAGAAGACAGGACTGCTTTCTTCGTATTACTATGGTGTTTGTACATAGAGTTTT AACAGGGGTTGCTTCAAAGTGTATCCTCAGTGATTCAAGTTTATTAAGTGTGCATTTGCTTTAAATATCACTCTCCATTT TGTAATTGTGGTACTTTGAAATGAAATCAGCTTTATTAAAAGAAGATATATCATATGCACACGCAACAGACTTCATTAAG TGGGATGTGGCTCAGTTGTTGCTGCTGTCTTTGGTTTGTTTTTGTTCGGAAAATATAAGGAAGGAAATTTGGTTGAGTCT AAGGAGAACACACTGATATTAATGGGTTGTAAACTGAGTGAACCAAAAATAATCGGAATCCATTGTAATTAAAATAAACA GATTTGAAATTATGCTTTATGTTTCTTGGAGCTTCTTGTGAAAGCTTAAGTCTTGCATGCTCATTTGTAGTTTGTTTGTG TGATCTTTGTAAGTTGATTCCATAAATTAACATTCATCATTTGTACTCTTCTATGTTTCTTGTTTTTGCTTATTTATTTT GTTGAAATGGTAGCTTTCCAATCATTAGCTAATAAACCAACATAACAGGTCACCTCAAGCTCTGTGAGACTGGTCAGTTC CACAACTAGGGAGCTCCGGAATGAATGGCATGCACCAGAAGGCTATTCAATAAATGTAGCTACTGCAAATGCTACCCAGG TTTGATTCTTTTTTTTAAATGTTAATTTTAGACTATGGTGATATTTGCTTGTTGAATTTGAAACGTAGCTACTGTTAATT TTTGAATTCCCTTGAGCAATGATTTGATGGCTTTTGTAAGCATGAAGGGGAGCATTCCCTGGAGGTTTTCAAAGAGCGAT ATGGCTCTACTTTTCAAATGCCTTCTTCCAGTATTATTATTTACTTGGCATTTCCTTGGATTCTTCAATGATGCCTCTCA CAATTAGTTTTTACTATATAGTATCAATGAAGCTATGTATAAGTTACCATTTGAGTGATTTAGCTTCAATCTATTTCATT ATTTGTGCATTATGCACATTTCAGATGTTGGATTTTACTCCGCACACATTAAGTTTGTATCGAGTTGGTAATTATTGTTA CACCTGGATACAGGTTTTGTTGGCCACAGGAGGTGGGCATTTAGTTTACCTCGAAATTGGAGATGGCATACTACAGGAAG TAAAGCACGCCCAACTGGAGTATGAGGTCTCATGCCTAGACATAAATCCAATTGGTGAAAACCCCAATCAGAGTCATCTA GCAGCAGTTGGAATGTGGACTGACATAAGTGTTAGAATATTTTCTCTTCCTGACCTGAATCTCATCACAAAGGAGCATTT AGGAGGAGAGATAATACCTCGATCTGTTCTTCTTTGTGCGTTTGAAGGGGTGCGCTTTCCTTGACCTATCTTTTTGTGTA CTGTTTTTTTTTTTGCTTCTGCGTAGGGTTGACTAATTTATTTTTCTGAAATGCCGGAAGACCATTTGGGGTACTCATTT CCTAAATTCTACTTTTAGAATGGGTTTTTCGGATTTTACACATTTAAATGGTTTTGGGGAATAAACAAGATCAGCAACAT TAATGTCTATTTTACTATTCTGCTCGAGTTACATATTTTTCTAATAATGCTCCAAGGATGAATTGACACATCTCCTAAGC TTCCATCTCATCTTTCTTAACTTCAATGGTAGTTTCCTAGTCTGAAGCTTTCTATTAAAGTGTATTGCTCATTTGCTCTT CATTTTATTCTCCAGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAACTTTATGTTGAACACAAGTTC TGGCGAGTTAACAGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACACTGCGGACTTTCTCATCCAAGAATACTA CCCATGTATTTGCCGCATCTGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTGTATAGTAATGTGAATCTG AAGGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTATTCCTGACAGGTATATTTGTCTGTTTTAGTTTGACATCCA AGAATGGTTGATTTATCATTTATATCGTATTGTTGTTTCTGGGTTTCGTACTTCGATGCAAAATCCATTATTGGCGATGG TGATGGTGATGTATTCTGCTACTCATAATTTCAACAGTTTGGCAATTGCAAAAGAAGGTGAGCTCACTATTGGCACCATT GATGACATTCAAAAACTTCATATTCGCACAATTCCACTGGGGGAGCATGCACGGCGTATCTGTCACCAGGAACAATCAAG GACTTTTGCTATTTGCAGTTTGAAATACAACCATACAAGTGCTGAAGAATCTGAAAGTCATTTTGTCCGCTTGTTAGATG ACCAGACTTTTGAGTTCATATCAACTTATCCACTTGACACTTACGAGTATGGTTGCTTCATAATTAGCTGTTCCTTCTCA GATGATAATAACGTGTATTATTGCGTTGGAACAGCTTATGTATTGCCAGAGGAAAGTGAACCAACCAAGGCAAGTTGAGA AATATATATTCTTTTCAGCTTTGGTCTTGTCAAAGCCTCTGATCCTGATTTGTTGGCCTTTTCTAAACAAATGTAGGGAA GAATTCTTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACAAAAGGAGCTGTTTACTGCTTG AATGCGTTCAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTATAAATGGGTGCTCCGGGATGATGGCAC CCATGAGTTACAGTCTGAATGCGGACACCATGGACACATCCTAGCTCTATATGTGCAAACTAGAGGAGATTTCATTGTAG TTGGTGATCTGATGAAATCAATTTCCTTGTTGATCTATAAGGTAAGCCTTTAAGTGGTCTTAATGCTGAAGTTTATCTTC AAATAAATTTACTATCTTCAATGTTAACTTTTCCAACGATGCCATTTCCTTTTTATTCCCACTATTTTTTGAAAACCTGA TAGAAGTCTTTGATTAGTTTCGTTAAATTTTGAACAGTTGTGATCTTATCATTGTGAATGAATAGTTAATTTTCTTGATA TTTACTCCATTTTCTTTCGGAATGATAAATTGTTGCTCTTCATTATTTAAGCATGAAGAAGGTGCTATTGAGGAGAGAGC TCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACGTATACCTAGGTACGGAAAATAGTTTCA ATCTCTTTACAGTTCGGAAAAATAGTGAAGGTGCTACTGATGAAGAGCGGGGTCGTCTTGAAGTGATTGGTGAGTATCAC CTTGGGGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTCATGCGCTTGCCGGATTCTGATGTCGGCCAGATTCCAAC TGTTATTTTCGGCACCATTAATGGCGTTATCGGGGTAATTGCCTCTCTTCCTCATGAGCAGTATGTTTTCCTGGAGAAGC TCCAGTCAAATTTGAGGAAGGTGATTAAAGGCGTTGGAGGACTGAGCCATGAGCAATGGAGGTCATTTAACAATGAGAAG AAAACTGCGGAAGCCAGAAACTTTTTGGATGGGGATTTGATTGAATCGTTTCTTGATCTTAACCGCAGTAAGATGGATGA GGTTTCCAAGGCATTGGACGTTTCTGTAGAAGAGTTATGCAAGAGAGTGGAAGAGTTGACTAGGTTGCACTGA
CDS sequence (LotjaGi4g1v0390500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTCACTAAGATCCTCAACAGATGATCCTTTTGACACTTTTCTGGTTGTTAGTTTCATAAGAGATACGAGAATCTT AGCAATGAACATTGAGGATGAGCTGGAAGAAATTGAGATTGAGGGATTCTGTTCTCTAGTACAGACATTGTTTTGCCATG ATGCAGTTCACAATCAACTTGTACAAGTCACCTCAAGCTCTGTGAGACTGGTCAGTTCCACAACTAGGGAGCTCCGGAAT GAATGGCATGCACCAGAAGGCTATTCAATAAATGTAGCTACTGCAAATGCTACCCAGGTTTTGTTGGCCACAGGAGGTGG GCATTTAGTTTACCTCGAAATTGGAGATGGCATACTACAGGAAGTAAAGCACGCCCAACTGGAGTATGAGGTCTCATGCC TAGACATAAATCCAATTGGTGAAAACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACATAAGTGTTAGA ATATTTTCTCTTCCTGACCTGAATCTCATCACAAAGGAGCATTTAGGAGGAGAGATAATACCTCGATCTGTTCTTCTTTG TGCGTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAACTTTATGTTGAACACAAGTTCTG GCGAGTTAACAGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACACTGCGGACTTTCTCATCCAAGAATACTACC CATGTATTTGCCGCATCTGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTGTATAGTAATGTGAATCTGAA GGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTATTCCTGACAGTTTGGCAATTGCAAAAGAAGGTGAGCTCACTA TTGGCACCATTGATGACATTCAAAAACTTCATATTCGCACAATTCCACTGGGGGAGCATGCACGGCGTATCTGTCACCAG GAACAATCAAGGACTTTTGCTATTTGCAGTTTGAAATACAACCATACAAGTGCTGAAGAATCTGAAAGTCATTTTGTCCG CTTGTTAGATGACCAGACTTTTGAGTTCATATCAACTTATCCACTTGACACTTACGAGTATGGTTGCTTCATAATTAGCT GTTCCTTCTCAGATGATAATAACGTGTATTATTGCGTTGGAACAGCTTATGTATTGCCAGAGGAAAGTGAACCAACCAAG GGAAGAATTCTTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACAAAAGGAGCTGTTTACTG CTTGAATGCGTTCAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTATAAATGGGTGCTCCGGGATGATG GCACCCATGAGTTACAGTCTGAATGCGGACACCATGGACACATCCTAGCTCTATATGTGCAAACTAGAGGAGATTTCATT GTAGTTGGTGATCTGATGAAATCAATTTCCTTGTTGATCTATAAGCATGAAGAAGGTGCTATTGAGGAGAGAGCTCGTGA CTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACGTATACCTAGGTACGGAAAATAGTTTCAATCTCT TTACAGTTCGGAAAAATAGTGAAGGTGCTACTGATGAAGAGCGGGGTCGTCTTGAAGTGATTGGTGAGTATCACCTTGGG GAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTCATGCGCTTGCCGGATTCTGATGTCGGCCAGATTCCAACTGTTAT TTTCGGCACCATTAATGGCGTTATCGGGGTAATTGCCTCTCTTCCTCATGAGCAGTATGTTTTCCTGGAGAAGCTCCAGT CAAATTTGAGGAAGGTGATTAAAGGCGTTGGAGGACTGAGCCATGAGCAATGGAGGTCATTTAACAATGAGAAGAAAACT GCGGAAGCCAGAAACTTTTTGGATGGGGATTTGATTGAATCGTTTCTTGATCTTAACCGCAGTAAGATGGATGAGGTTTC CAAGGCATTGGACGTTTCTGTAGAAGAGTTATGCAAGAGAGTGGAAGAGTTGACTAGGTTGCACTGA
Protein sequence (LotjaGi4g1v0390500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSLRSSTDDPFDTFLVVSFIRDTRILAMNIEDELEEIEIEGFCSLVQTLFCHDAVHNQLVQVTSSSVRLVSSTTRELRN EWHAPEGYSINVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEVSCLDINPIGENPNQSHLAAVGMWTDISVR IFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSSGELTDRKKVSLGTQPITLRTFSSKNTT HVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQ EQSRTFAICSLKYNHTSAEESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEESEPTK GRILVFTVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGDFI VVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLGTENSFNLFTVRKNSEGATDEERGRLEVIGEYHLG EFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKT AEARNFLDGDLIESFLDLNRSKMDEVSKALDVSVEELCKRVEELTRLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 136 | 136 | 5.8E-30 | – | |
| PANTHER | 1 | 687 | 687 | 0.0 | – | |
| PANTHER | 1 | 687 | 687 | 0.0 | – | |
| Gene3D | 1 | 302 | 302 | 1.7E-224 | ||
| Coils | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 98 | 486 | 389 | 1.37E-11 | ||
| Gene3D | 303 | 574 | 272 | 1.7E-224 | ||
| Pfam | 344 | 657 | 314 | 3.8E-80 | ||
| Gene3D | 603 | 688 | 86 | 7.2E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0390500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…