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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392000 |
| Transcript ID | LotjaGi4g1v0392000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|A0A072TU76|A0A072TU76_MEDTR Sieve element occlusion protein; Found in the gene: LotjaGi4g1v0392000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77058584..77064313) extracted from Lotus japonicus Gifu genome v1.2.
TGAGACAGAAGATACCAACAATACGAAAGCCATAACTGATGAAAGGTATAAATTCGGCCACTTTATCCCACCTTCGAATT TCACCTTTGATACTTTATATGATTTTATTGAACCCAAACACAAGCAAGGTAGAAAATACACAGAATTGGGCATCAATAAC TATATATGAGGCCATTGACACTAGGCCTAGAACTAGCTAGCACTAACTAAAACCATTTTCACTTTTCAGCCATTGATTAA TTCATCCTTAATTTGTTGCAGCCATTACTTAATTTCTGTTCATAAACATGGAAATCACTCCCAGGAAGATGCAATCCAGG GCCAACCGCCACATATTTTCAGCATCAGATGACACTGTCATGACCAAACAAATTCGTGCTACTCATGCTCCAGTTGGTGG ACATATTAACGTTAGACCTCTTCTTAATGTTGTTCAGGACATTTTCCACCGTGCCTCTTTCATCCCTCACATTGTTCAGG TATGTGTAGTTCAGTGTGTGTGTATTAGATTTAGTATCATTTTGCATTTGGTTCATAATTAGAGCAATTCTTGCATCTGC GGACACAATTAACTAGTATTAAAAAATTTAGAATATAGTAAAATAACAATAATACTAGTAAGACATAAAATCCCATGCTG TAATCATAGTTTTATTAAATAATCATAGTTTCAAATCAAGTTCTGTCAAGTGATTAACATCATGATTTTGAAGATTTATA AATTCTATATGACCGCAACTGCATCAGCTCTATTTGTTTATAATTTTCTATTATATTAAGATCAAATTCATCTATGTTGT GTCATAGTTGATCCTAAATTCCTAAGTCCGAATGAAGGAGGAAGGTTATCTTAGACCTGCGGTAACCAAAATCGACCGAA TATTTAAAATGGATCATGTGATTCATATAGCCAACCTCACTTAGTGGGATAAGACCTTCATTTATGTCTATGTTATTAAA ATCACACTGATGCTACAACATTCTCAACTTAAACCAAGGCAGTTATTAGTCTTAGTTTTAATTTTAGCTTTTAGTTAGTT TTGCATACAGATACTACTATATCACTCTAATGATTTTACTTAACAACTTTCGATGGTCATTTTGAAAATTTACACAGGGA AAGCAAGAGCAATTGGGAGCCATAGAGGACAATTCCCACCAATCTGACTTAGCTGATATGCTAGATATTTCTTACCACAC AATTAACAAAATTTCCTGCGAGGTTTTATAATACTCCCCTCTAATAAGCAGAATAATCCTTTGCTTTTCACTCTTAATAA ATTTGCAGGGGCAACATATTAATGTTTCTCATGGTTGTGTTGTGTCAGATATCTTGCAAGTGTGTAGGTGGTGGAGACGC CCATGCCACAACCATAGAAATACTGAGCATGCTCTCAAGCTATTCATGGGATACTAAAGTGGTGATTGGTTTAGCAGCTT TTGCAGCAAACTTGGGGGAGTTTTGGCTGATGGCTCAGCTCTATGCCACCAACCGTCTTGCCAAGTCTGTTGCAATGCTG AAGCAAATCCATGAAACACTTGAACAAGTGGAAGCTTTGGGACCCAAGTTTGAAACAGTGAACAACCTTCTCAAGGCCAT GTTAGATGTTGCCAATTGCATTGTTGAGTTCCATGAGCTTCCCTCTCAGTACATTGACCCTGAAGCACCAGAAATGTTGA ATGTATCCACTCTTATTCCAAGTGCTGTCTATTGGACCATTCGGAGTATTGTGGCATGTGCTTCACATGTTTTAGGCATA GTTGGTCTGGCTCAAGGGTATATATGCCTACTTTGTTCGTGACTTATAAGAATCATCTGCACACCGCAGACATCCAAGCG ATACATGCAATTTATGGCAATAAAAAACCGTTAGTCATGTGCAAACCTACAAAAATACATTCTGGAAACTATTTATGGAA TGTACTTTTAAAATTGCATTCTGAAAATTAGTATCCAGAATGTGTTTTTGAAGCATCTGCATATTGTTGACGTGAAACCC TAGAAATTGCTTGTGTCGATTGGGTGTCGTGCACCTTGTATGTCTGTCTAGAGCGACCGTGACTTTATCTATATTATGTC TTCTTAATTTCTTTTGTCAGATACCTGATATCAACAATAGAGACTTGGGAGCTTTCCAGTTTGGTTCATAAGCTCGATAA CATAAATAGCCACCTTCGGAAACAACTAGCCCTTTGTCATCAGCACTTAGGTAAGTTAATCCACTTACTAGGTCATGTCA CGTGTTTGTATGTTCAATGTGGATCATGGACATTAATGATGTAGATGAAGATGACAAGAAGCATTGTCTTGTTTTCTTTG TGTATAATAATACATCCAATGTCTATGCCTGGTAACATCATTTTATGATGCAGATGACAACAAACAGATAGAAGCATTTC AAACACTTCGGCGCCTTTTTGAGACATTGCATCTAGATAACATGAAGGTTCTTAAAGCTCTGTTTTGCAGCAAGGATGAT CTGTTGCCACTCTTCGATGGTTCTACCAAGAAAAGGGTAGCTCAGAATCTGTTCTTAGTGTCATCACTTTGATCCTTAAA TAATATCCTAATGAGAATGATAATAATGCAATTTGGCAACAACAAATTGAACTAACCAAGCTAGATAATTCAGAACTAAC CAATCAGATAAAAAGTTGTGTGTTTGTATTTCCATTTAAGTTGGTCAAACCGTGTTAAAATATGCGCCGACAGAAATACA AACACACGCATATGATGTTGTTGTTCACACTTTCAGTGGCTTCTGTCTTCAGGTTAGCATTGATGTTTTGAAGAGAAAGA TTGTGTTATTCTACATAACAGACCTCCATCATGTCTCTGAACAAGAGATTATGATTTTTGAACAAATGTATCAAGAGTCA AGGCAAGACTCAACCAGGGTAGAGGGTCAATACGAATTTGTTTGGCTTCCTGTTGTGGAAAAAGGAACCTCAGGGGCTGA AGCAAAACAAAGGTTCGAGAAGCTGCAATCAATGATGCCATGGTTTTCAGTTTATGACCCTTCTCTTCTGGAGCCATCAA CCATCAAGTACATTAAAGAGGTGTGGCTTTTCAGTGGGAAGCCTATCCTTGTAGTGTTGGACCCCCATGGGAAGGTTATG AATCTCAATGCAATACACATGATGTGGATTTGGGGAAGCCTGGCATATCCATTTTCTAGCTCAAAGGAAGAATCACTGTG GAAGGAGGAAACATGGGGACTTACCCTGTTAGCAGATACAATTGATCCTTTACTCATTGATTGGGTTAGTCTCCATTTTC TTCTCTGCTTTTATATAAGAACATATGCATATAAGCTAGTAATCTAGTTTAAAAAGTGGAACATGAGTAATGAATGTTAT GGTTGATTAGCTAACACGCTATATGTGATTGGTTTATCATCATTGTCCGCTGCATGCTTGGTTCAGGTATCAGCGGGAAA ATACATATGCTTGTATGGAGGAGATGATATGGAGTGGATCAGAAAATTTACAAGTACAGCAAAATCAGTGGCAAGGGAAC TTCAAATACCACTAGAGATCATTTATGTGGGAAAAAGCAACCCAGGAGAGAGAGTTAGAAAAATCAACAAGGCCATACGT GAAGAAAATTTGAGCAACGTACTTGCTGACCTTACTATTATTTGGTTCTTTTGGGTTAGGCTGGAGAGCATGTGGCACTC CAAACTACAGCAGAGCAAGACAGTGGAGAATGACCAGATAATGCATGGAATAATGAGGATCCTAAGCTTTGATAGCAGTG ATCAGGGTTGGGCTGTGATCAATCAAGGCACAGGGAGAATGGCACAGGGCAAGGGAGACACATTTATAAAGTGCCTTGAG GAACATGAGCACTGGAAGGATAAGGTTAATGATAAAGGGTTTTTGCCAGCAATGGATGATTATATGCAAGAACTCCAAAC CCCACATCACTGCAATCGTTTGATTCTGCCAGGAGTCAATGGTAGAATCCCTCAAAAGGTTGTCTGTGCTGAGTGTGGCC GTTCAATGGAAAAGTTCTTCATGTATCGTTGCTGCAATGAGTGAATTCCAACACTTCAGGTTTGGATGCATGGTAAATTC TTCTACAGAAATTGATCCCTGCAAGAAGCTACTCCTAGATCTAAACCTGAACCCAAACATACTACTAGACCGTGAATAAG ATTATTAATGTAGAACTAATATTAATAATGAGTATCTACATTGTTTATATCAACTATAATTCTGTCTTAGACTAAGCTTG AACAACTTTTGAGTCCCATTCTTTTTCAATTTATTTACACTACTCCAAGTGCTTGGAGAAACAAGTCATAACCTTACGTC GGTTGAAGCATAATTTCAAAGTAAGGTGTCAAAATCTTGAATAAGATTATGTCTAGAATTATAATTCAAAATGTACTCAT CTACAATGTTCATATAAAGGCTTATTAATTTATTTGCATCACTCCAACTAAAAGGTTTACATGGAGCTGGAATTGCACTT CTGTATTGAAGAATAATTTGTTCTGAATCAAAATTTTATTCAATCACAACTACAAATGGTACATATTGACAAATTAAACA TCATTGAGGAGAAGATTTAGAGGCTATAGTTACAGAATTCCAAATCTGAGAAAGAGGGCCAATGATATGAGGCAAAACAG CCCCAATTCCTTTAAGGGCAGCGCCTGAGGCAACCCCAATTGCAAAAGTCTCTACATACCCAGGCTTTGAGTCAAGCTTC ATGTCAAGAATGGCAAGTCTGCTATTAACCGCATCCATCTTCCTAGAAGAATCACTTAAAAGCTTATCCTTTTTACCTCT ACCAGAGGAAATTACCCCAAACAATGCCTTCTGAAGATCCTCTATGACCTTCAAGGAGGCTTCTTCAGTCTCCATCCCTT GAGATTCATAGTGGGATATCAATTCCCTCGGCGATGGAAGCTTCTTAATGTTTGGTTTAGCTTTAATCCCTGGTTTAGAT GGTAAATTTGAGGCCGGAAGTTGTTCCATCTCCACAATTTTCACTTTTCTACTTCAAATTCAGTAACCCATTAACATTCA CATAAAACACAACCTGCAAAGCAATTAAATTTCATTGTAAGAAAACATCCATGGTAATGAAGATGCAAAACCCTAAAACC TAAACCCTAAAATCAAGCTAAATTATTATCAAAAACTGCAATTGAATATGAAAATGTAGAAATGAAATGTACCAGGAGAC AGGTAGCATGGTGCAGATTGCACCACGCTGTTTAAAACTGGCTATTCGTGAAGAATCATTTGTATATGCTTCGGAAACTT GAACATCTCCCATTCAAAAAGGGAGGGTTCACCATAAGAAGCAACAGTGCAAAACAAAAATTGAAATTGAATTTCACAAT ACGACCATAGCAACAAGCTACAATGGTGATATAAATGCAGCTGTTTATAATGTAAGAGAAGGTCGACATTGAAAAATCTA TACGCTTTCGTTGACACGTTCTTCGCCATTGGAAGCTTATGAAGAACGCAACGCCTATCGAAAAGCGACAATTCAGAGAA GAAAAACACAGCTGAATGAAGTAGGAGACAGAGGGGGAGAGGGAAGACGTACGGAGAATTACGACCGTCGGCGATTGATT CAGCCTCGCCGTCGAGGCTAGGGTTTATCGTTGCCTTTGAACAATTGGATGAGGCGGTGATGAAAGCTTGCACTGACTGG TTTTATACAGAAGCGAAGAACCCTAATTTAACACCAAGATTGGGCTTTGT
CDS sequence (LotjaGi4g1v0392000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCACTCCCAGGAAGATGCAATCCAGGGCCAACCGCCACATATTTTCAGCATCAGATGACACTGTCATGACCAA ACAAATTCGTGCTACTCATGCTCCAGTTGGTGGACATATTAACGTTAGACCTCTTCTTAATGTTGTTCAGGACATTTTCC ACCGTGCCTCTTTCATCCCTCACATTGTTCAGGGAAAGCAAGAGCAATTGGGAGCCATAGAGGACAATTCCCACCAATCT GACTTAGCTGATATGCTAGATATTTCTTACCACACAATTAACAAAATTTCCTGCGAGATATCTTGCAAGTGTGTAGGTGG TGGAGACGCCCATGCCACAACCATAGAAATACTGAGCATGCTCTCAAGCTATTCATGGGATACTAAAGTGGTGATTGGTT TAGCAGCTTTTGCAGCAAACTTGGGGGAGTTTTGGCTGATGGCTCAGCTCTATGCCACCAACCGTCTTGCCAAGTCTGTT GCAATGCTGAAGCAAATCCATGAAACACTTGAACAAGTGGAAGCTTTGGGACCCAAGTTTGAAACAGTGAACAACCTTCT CAAGGCCATGTTAGATGTTGCCAATTGCATTGTTGAGTTCCATGAGCTTCCCTCTCAGTACATTGACCCTGAAGCACCAG AAATGTTGAATGTATCCACTCTTATTCCAAGTGCTGTCTATTGGACCATTCGGAGTATTGTGGCATGTGCTTCACATGTT TTAGGCATAGTTGGTCTGGCTCAAGGATACCTGATATCAACAATAGAGACTTGGGAGCTTTCCAGTTTGGTTCATAAGCT CGATAACATAAATAGCCACCTTCGGAAACAACTAGCCCTTTGTCATCAGCACTTAGATGACAACAAACAGATAGAAGCAT TTCAAACACTTCGGCGCCTTTTTGAGACATTGCATCTAGATAACATGAAGGTTCTTAAAGCTCTGTTTTGCAGCAAGGAT GATCTGTTGCCACTCTTCGATGGTTCTACCAAGAAAAGGGTTAGCATTGATGTTTTGAAGAGAAAGATTGTGTTATTCTA CATAACAGACCTCCATCATGTCTCTGAACAAGAGATTATGATTTTTGAACAAATGTATCAAGAGTCAAGGCAAGACTCAA CCAGGGTAGAGGGTCAATACGAATTTGTTTGGCTTCCTGTTGTGGAAAAAGGAACCTCAGGGGCTGAAGCAAAACAAAGG TTCGAGAAGCTGCAATCAATGATGCCATGGTTTTCAGTTTATGACCCTTCTCTTCTGGAGCCATCAACCATCAAGTACAT TAAAGAGGTGTGGCTTTTCAGTGGGAAGCCTATCCTTGTAGTGTTGGACCCCCATGGGAAGGTTATGAATCTCAATGCAA TACACATGATGTGGATTTGGGGAAGCCTGGCATATCCATTTTCTAGCTCAAAGGAAGAATCACTGTGGAAGGAGGAAACA TGGGGACTTACCCTGTTAGCAGATACAATTGATCCTTTACTCATTGATTGGGTATCAGCGGGAAAATACATATGCTTGTA TGGAGGAGATGATATGGAGTGGATCAGAAAATTTACAAGTACAGCAAAATCAGTGGCAAGGGAACTTCAAATACCACTAG AGATCATTTATGTGGGAAAAAGCAACCCAGGAGAGAGAGTTAGAAAAATCAACAAGGCCATACGTGAAGAAAATTTGAGC AACGTACTTGCTGACCTTACTATTATTTGGTTCTTTTGGGTTAGGCTGGAGAGCATGTGGCACTCCAAACTACAGCAGAG CAAGACAGTGGAGAATGACCAGATAATGCATGGAATAATGAGGATCCTAAGCTTTGATAGCAGTGATCAGGGTTGGGCTG TGATCAATCAAGGCACAGGGAGAATGGCACAGGGCAAGGGAGACACATTTATAAAGTGCCTTGAGGAACATGAGCACTGG AAGGATAAGGTTAATGATAAAGGGTTTTTGCCAGCAATGGATGATTATATGCAAGAACTCCAAACCCCACATCACTGCAA TCGTTTGATTCTGCCAGGAGTCAATGGTAGAATCCCTCAAAAGGTTGTCTGTGCTGAGTGTGGCCGTTCAATGGAAAAGT TCTTCATGTATCGTTGCTGCAATGAGTGA
Protein sequence (LotjaGi4g1v0392000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEITPRKMQSRANRHIFSASDDTVMTKQIRATHAPVGGHINVRPLLNVVQDIFHRASFIPHIVQGKQEQLGAIEDNSHQS DLADMLDISYHTINKISCEISCKCVGGGDAHATTIEILSMLSSYSWDTKVVIGLAAFAANLGEFWLMAQLYATNRLAKSV AMLKQIHETLEQVEALGPKFETVNNLLKAMLDVANCIVEFHELPSQYIDPEAPEMLNVSTLIPSAVYWTIRSIVACASHV LGIVGLAQGYLISTIETWELSSLVHKLDNINSHLRKQLALCHQHLDDNKQIEAFQTLRRLFETLHLDNMKVLKALFCSKD DLLPLFDGSTKKRVSIDVLKRKIVLFYITDLHHVSEQEIMIFEQMYQESRQDSTRVEGQYEFVWLPVVEKGTSGAEAKQR FEKLQSMMPWFSVYDPSLLEPSTIKYIKEVWLFSGKPILVVLDPHGKVMNLNAIHMMWIWGSLAYPFSSSKEESLWKEET WGLTLLADTIDPLLIDWVSAGKYICLYGGDDMEWIRKFTSTAKSVARELQIPLEIIYVGKSNPGERVRKINKAIREENLS NVLADLTIIWFFWVRLESMWHSKLQQSKTVENDQIMHGIMRILSFDSSDQGWAVINQGTGRMAQGKGDTFIKCLEEHEHW KDKVNDKGFLPAMDDYMQELQTPHHCNRLILPGVNGRIPQKVVCAECGRSMEKFFMYRCCNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 702 | 702 | 0.0 | – | |
| Phobius | 1 | 129 | 129 | - | – | |
| PANTHER | 1 | 702 | 702 | 0.0 | ||
| Pfam | 20 | 305 | 286 | 1.7E-116 | ||
| Phobius | 130 | 152 | 23 | - | – | |
| Phobius | 153 | 702 | 550 | - | – | |
| Pfam | 470 | 701 | 232 | 8.3E-107 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phloem development | The formation of the principal food-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi4g1v0392000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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