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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392900 |
| Transcript ID | LotjaGi4g1v0392900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | eukaryotic translation initiation factor-like protein; TAIR: AT3G26400.1 eukaryotic translation initiation factor 4B1; Swiss-Prot: sp|Q9LIN5|IF4B1_ARATH Eukaryotic translation initiation factor 4B1; TrEMBL-Plants: tr|I1KSX1|I1KSX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77124558..77131120) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGCTAAAGTAGTAATGGAAAACGAAGGTGGGTAACACGATGAGGCATTAATTAAGGCCCTGAAATGGTAACTGTTCC GCACGTGACTAATCCATCATCCTCACACGCTCACACATTCACCAATCCTCGTCGATCTACTTCTTGTTCTTCTTCAATTC CCCTCTTCTCTTGTTTCATTCATCTTCCTTCACATTCTTCGTGTTTCCCATTTCCCTCACATTCTTCGTTTTCTTCTCTG CATGTTCTCGGAGCTCCGGCTCCATTAACGGAGCTCCGGCTCACCTTTACAAATCTCAATTCAAACCAAACAAACAAACT CCATTTTCTTCTCTGAGATCTATCTCCAAATGTCCAAACCGTGGGGTAACATCGGAGCATGGGCGGCGGATTCCGAACGC GCCGAGGAGGAGGAGCGTGAAGCCACGGCGGCCGCCGAGTCGCAAAGCTTCCCCAGTCTGAAAGAGGCTGTGACTGTCAA ACCCAAGAAGGGCAAGAAGATGACGCTCTCGGAGTTTAACATGGGCGGTTTCAATTCCTCTGGCGTTGAGAAACTCACGC CGGCTGAGATGCTCCGTCTTCCTACCGGTCCTAAGGAGCGTTCCGCCGAGGAAATGCAGTCCAGCCGCTACGGCGGCGGT GGATTCTCGTCGTTTGATCGTGGGAGTCGCAGGCCGGAGCGTGATGGTGATGGTTCTTGGGGTGCTGGGAGGAGATCTTA CGGCGGATTCGACGATGAGCGTAGGGGTCCTCCTAGTTCTAGGGTTTCGGAACTCGATCAGCCGTCGAGGGCTGATGAGG TGGATAATTGGGCGTCGATGAAGAAATCTCTCCCGTCTCTTGATTCCGGCCGGGGGAATCGATATGGTGGCGGGGGTGGT GGTGGTGGCGGTGGGTTTGGTGCAGGTGGTGGTGGTGGTGGTTTCGGTGCTGGTGGTGGAGGTGGTGGGTTTGGGGGAGG GTCCAGGGCTGATGGGGTGGATAATTGGATGTCTGGGAAGAAGCCTCTTCCGTCTACTGCTCCTCCTCCTGCCAGATCTT CTGGTTATTCTGGTTTTCGCGATTCTGGTGGCGACCCCGATCGGTGGCCGAGGCGTGAAATGGAGCCTGACCGTGAGAGG CCAAGGTTGGTGCTGGATCCGCGGAAGGGTGATGGTTCTGTGAATGAAACTCCTCCCGCAATGACGAATAAGCCGAGTCC GTTTGGTGCTGCTAGGCCTAGGGAGGAGGTGTTGGCGCAGAAGGGATTGGATTGGAAGAAGCTGGATTCTGAAATTGAGG CGAAGAAGGCTACAAGTAGGCCCACGAGTTCTCACTCCACCACCAGCAGGCCTTCCAGTTCTGAGGGTCCAGATGCTGTG CTGAAACCAAGGCCGAAGGTGAACCCCTTTGGGGAAGCCAAACCAAGGGAGGTTTTGCTCGCCGAGCGAGGTGCTGATTG GCGTAAGATTGATCTTGAATTGGAGCGTCGCGGGGTTGACAGGTTCCTCCTTCTGCATTTCCACTCTTTACCTGATCTAT CATTCTGTCTTATGCTTTTATCGTTTCTTCTTTGGTCTGTTATTTAATTTAGAACCATATAAGTTCCTTCAATTGTGAAT TTATTGCAGTGTGTGTTGAATTAATTTGATTTATGGCAATATTGATAGAGTAGCATGATCATATTGGGGTAAGATCTTGA TGGGAAAAGAGATGAGCGTGAATTTCTTTATTGGTGATGGTTTCGTTTGTAGTTTTATGTGAACTGGCTACATTAAGGAG GTTCTCAATGCTCAGTACTGACTTAGTTAGCATATAGGTTATACATTGAGGTGGAAACATACTAAAAGTAGTTTTTCCAT ACTACCTCATGCCTTTAGGTGGTTGGATCTGCAGTCAATAGTATATAATAGTTGATTTTATTAATTCTACATTCAAAGCA GTTTTTTCAATTGGGATTCAAATGCTCATTATGTTGATAAATCACACATCAGTGATTATTTAATCAAAATGTTGAATGTT TCATTTGAGCATGAGTGTTTGGAGTATGGAGAGAATACAAGTGGCTTCATTCTGTGAAAATTAATCATAGATCAAAGGCC AATAGAGGTAGAAAGAGGTAAAACCAAGGAGTAGATGTTGAAGTTAAATTTGAGGTAATAACATGTATAATTAGGGAGGT TGATGCATGTATATCGGGCTGGGCTCAAGATGAACGAAATTGGTCAAATTAGGGTTCATTTGGTTGAACATAGGGAGAAT TAATCAAACACATATTTCTTTCTGTTGAAAACTGAAAATGTTTGAGCAAGAGGATTAGAGCTAGGGGTAATGATAAATGA CAGAGGGGTGGGTAAATATTTTAATTTCTATTTGGTTACATTTTTCGTTTTTAAATGAAGTATTTTAAATAGTATTATTA ACTTGTTTTAGGTAACTTTATGCCATTCATGATGGGATTGAAGTCTTGTTTGTGGGTTCATACATTATATGGGTTTGGGT TGGTGTGAGAGTTTTAAAAGATGACTTGCTTTCTTGTGAATATTTATTTTACAAGCATAAACAACAATTAAATGTTTCAT TCATACGATTTGGGATTGTTTATATTTTGCTTTTTGAGTATTTTATTTGTTATAATTTAATGGTTGATTTGAGTAGATTA TTTTCTTTTTTTCAGTTAAAGTCTTATTAGGATTGTACATGACTTTTCAATGTCTTAAAAGAATATTGCCTAGTTAATAT TCAAGTGTTATTATACTCATAAAAAGGCTTGCTATCTGTAAAAGAATGTTCAGCTTATATTTTCAATTGTGGAAAATATC TTGTATACATACAGTGCCCATGGTGGATGCACCACAATAATCATGTGTGGAACCCCATTTGAAATTCATTGTGGGGCCAA CACATGCTGTGAGTGTTCCAATCATGGTCATAATGATCTTCATTGCAGGTATAACTCTCACCTTTGATATTATTGAAAGG TTTTCACTTTGCTTTTGGTTAATTTCAGGGTTTACTCCTAGTGAATCTGTTAGGTAAACTTAATGTGCTGGTTTCGGTTA CTTAGGTTAGGTGATTAGTGATTGTTATTCAGAATTGTAGCAGTACTTGGCAGAGTCCTTAAGGAGGTTAGGAGAGGAGA TTAGAGGGTATTCTGTTTTGTTGGGGATATGTTTTGGTGGGAGGGATCACAAGCTTACAAAAATACTGAGAGGAACAACT TGTATTCATCTTTCCTCTTCCTCACCTGGCTTCATATTATTGAGGGAGATCTCATCTATAAAATCATATATTTCCTTTAA TTCTCCCTCTTACGTCTAAATCATTATCTATCAAAATCCTCTGTCATTTGCTAGAATGATTCTTAGTCTTGTCTTATTAG TTTTGCGTTTTTGTTGTGTCAGGGATTCCCCAATGATGCGTATAGTTGATAAGGAAGATCTGTTGATACTTTTTAGACAG AACTGACATGAAAAACAAATATTTTGTGGTTTTAAAACCATAACTTTTTAACACGCCATCCATAAGTTTGAGGGTGAAGA TTGAAGTATTTTTGCAGAGTACGAAGTAGTGTATGGATAGCAATACAAATGACTGTTTCTGACAGATATGTCAGTTAGCG TTTGTTATAATTCTGTTAGGTAGTTGTAAGTTGTAACTGACTGTGGGTTCTTTCTGTCAACCCAAGTGTAACTCTATAGT ATATAAATAGCCCTCCAGTTAAATTGTATATCACTGTTTTTAGAGTTTTGTTTCAACCTTGTTTAAGTTTTCAAGTGGCC AGAGGTGCACAATGTTAGGAGGTGGAGTCTGGCGGGGAGTTTATGATATAGGGCAGCAGTTGGCCAGAGCTGTAGCTAGC GTTCTTGTCATTTTTTAAGATTTTGTTTTATTCATATTTTCTGCTTCAGATTCAATTCCATTCATCTTCTCTTTTCTGCA TATGGGTGATATGTCTTGGCCTTCTTTCTCGCCGTCTTTTCCTTTATTAGTGGTGAAGTTTTCCTTGTTTCATCTATCAT CATCAAATATGCCTTGATCTGTCATCCTGTTTGGTTGCTTTTAAGTCTGGTTGGCTTGGTTGCAGTTTCAACTTTCTCCC CTTTTAGTGGTAGTATGCTTTCGTATGACTTATTTAGCTTTGTACAACTATTGAAATGTTATGTGTGACCTTTGGTGTAC TTCTATTGACACAAACAAACCCAATATATAGGGATCAGCATGGAGGTTGAGAGGACACCAAAGGGTTAAAGTCAAAGTCT TTCAGTAGCTATTTACATAAGACATGTTTATTGACTCATTGTATTGGTATTCATGCGAAGTTCTAGTGGCCTAAATTCTT TGATTGAGATTGGCTGGGTTATGCCTCACGTTTGTAGATTTACTATTTGAAACTAGCTTAAACTCAAGCTTGAGGAGAAG TGTTACTTAGAAAAATATTAGGGTCATTAAGATTTGATGTAGGTTGCTTTGGGCTTTTTTTAATAAACAGTACTTGACGT AATTTTTAGCATAAGTAGGAGTACTTGATTAAGGTATTGTGTCACAGCTATCAATCAAGTTCAGTATGTCGTGTAACGGT CTTTGTCTTAATTTTCCCTTACCTAAAGACCTATAGTTCTTACTGGCGGATTGCTAATAGTTTTAGTGAATGTTCCACAT CATTTAGTCCCAATATTTTGGCTTTAATCAAGCTTTGCCGTTAACAATGTAACCTTCTACTTATTTATTTTTTTCACTTT ATTTGGTTATGCACAAATTTGCAGCATGATTTGGTATAATAAGGTTGTCACTGCTATCGATCAAGTTCAGTATCTATCGG TCTTTCTGTTAATTTTTCCTTACCTTAAGACCTATAATTCTGGCTGGTGGATTGCTAATAGTTTTAATGAATGTTCTATA TCATTTACTCCCAATATTTTGGCTTTAATCAATGTTTGCTGTTAACCATGTAACCTTGTACTTGTTTATTTTGTTCACGT TATTTGGTTATGCACAAGTTTGCTACATGATTTGGTCTGATTAGGCTATGCTTTATATGTGAGTTGTTGATCTTTCAAAT ATACACATTACCTCGTTGACTTCTGAACGTACATTTCAGGCCTGAGACGGAGGAGGAAAAATTATTAAAAGAAGAAATTG ATAATTTGAAGAAGGAACTCGAGAAAGAGCCTAAAATGAATTCAAATCAGGAATCTGCTGATGAGGCTGGTGCAAATCAA ACTGGTGCGCATGCACTGTTACTACAAAAAGAAAGGGAGCTGGAACTTCTTATCCATGATTTAGATGACAAAGTTCGTTT TGGGCAGAAAGCTGTTGATAGGCCAGGTTCATCAGCAGGAAGGACTCCTGTTTTATCTGATAGGCCGCCATCTCGCTCTG GCTCATTTGAGGATTCCAGAAGTGTGGATTTTTCAGACCGCCCTCGATCCCGCGGCACAGGAGATGCTTGGATGCGTCCT AGTGACGACCGAAGACAGTTTCAAGGTAGCAGGGAACGAGGGTTTTTTTCAGGCAGCAGAGACATGGATAGGTAAGAATA CACAGTTGCATTGTTGTCTCACATTTTCTTCTTGTTTCTAGTTCTGGTCTTGCCACTTTCGGTATAAGTTTGCCTTATTG CATATTCTTGCTGTGATGTGTTACTCAAACATTATCTGTTGGGTGTGGTTTGGACACAGAATTGACAGACTTTGCTGTGT TTCAGCAGGTCAAGGTCAAGAGAAAGATGGTGACGAGCGGTTTTGTGTGGATTAAGAGTTATCTTCAACTTTTGATGACC AGAACCTGATAGTATTTTGTTACTTTGTCTTTTTTAATCGTTTTGTTCATTCTACTCCAGGAATTGGAGCAACAGTCATT GAGTACTGGCATATTACTTTTGCCTTAATCTGTTATTGCTTCTCGAAACACTGTAAATTTGTTTTCCCCTTTCGGCTAAT TTTTTGGGTGTCTGGATGAAGGCAGTAAAAGCCTGTAACTTTATTAGGACATAATTTTTATTGAAGATTATGGAACTTTG CTAGTTAATGTGATTGTTCTAATACGATATTATTTTCCCCTCATTCTGAATCTGCACAATATCGGCCTTAACATCAATAG TTTTTTTATCTCCTGTTTTTTAGCATCAAATTACAAATGTTTTTTAAAGTTAACCGCAATCTCCATGATGCTTAAAAACG GCAACACGTCTTGTGTTGTCTTTACATTTGGGTTAACTGGTTTGGGCACGTTGTTCATTGGTTGGTTGGTTTCTAATATG CACGTTCATACAGGCATGAAAAGATAGGGGAAGTGGTTGGTACATGTATCTATTTTTCATCATGCTAAAAAGAGGGTGGT CAACAATTGAATATCCATATTGTTTACACCGCAGGATTATCTGTAAAAGATTTTGTGGTTCGGTTCATCGTGTTTAAGAG CTACATTTTGATTGCTCAATGGTCAATTTTATTTATGAAAATACTTTTTATTTCCCCTTGTATTTGTAAAAACCATTACA ATTTTGTTCCTATTGTTAGGTAGATATTATGTTGGCAAGTTAGGATAACTAAAAGCTGAATTTGTATTGTTGAATAGTTA ACC
CDS sequence (LotjaGi4g1v0392900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAACCGTGGGGTAACATCGGAGCATGGGCGGCGGATTCCGAACGCGCCGAGGAGGAGGAGCGTGAAGCCACGGC GGCCGCCGAGTCGCAAAGCTTCCCCAGTCTGAAAGAGGCTGTGACTGTCAAACCCAAGAAGGGCAAGAAGATGACGCTCT CGGAGTTTAACATGGGCGGTTTCAATTCCTCTGGCGTTGAGAAACTCACGCCGGCTGAGATGCTCCGTCTTCCTACCGGT CCTAAGGAGCGTTCCGCCGAGGAAATGCAGTCCAGCCGCTACGGCGGCGGTGGATTCTCGTCGTTTGATCGTGGGAGTCG CAGGCCGGAGCGTGATGGTGATGGTTCTTGGGGTGCTGGGAGGAGATCTTACGGCGGATTCGACGATGAGCGTAGGGGTC CTCCTAGTTCTAGGGTTTCGGAACTCGATCAGCCGTCGAGGGCTGATGAGGTGGATAATTGGGCGTCGATGAAGAAATCT CTCCCGTCTCTTGATTCCGGCCGGGGGAATCGATATGGTGGCGGGGGTGGTGGTGGTGGCGGTGGGTTTGGTGCAGGTGG TGGTGGTGGTGGTTTCGGTGCTGGTGGTGGAGGTGGTGGGTTTGGGGGAGGGTCCAGGGCTGATGGGGTGGATAATTGGA TGTCTGGGAAGAAGCCTCTTCCGTCTACTGCTCCTCCTCCTGCCAGATCTTCTGGTTATTCTGGTTTTCGCGATTCTGGT GGCGACCCCGATCGGTGGCCGAGGCGTGAAATGGAGCCTGACCGTGAGAGGCCAAGGTTGGTGCTGGATCCGCGGAAGGG TGATGGTTCTGTGAATGAAACTCCTCCCGCAATGACGAATAAGCCGAGTCCGTTTGGTGCTGCTAGGCCTAGGGAGGAGG TGTTGGCGCAGAAGGGATTGGATTGGAAGAAGCTGGATTCTGAAATTGAGGCGAAGAAGGCTACAAGTAGGCCCACGAGT TCTCACTCCACCACCAGCAGGCCTTCCAGTTCTGAGGGTCCAGATGCTGTGCTGAAACCAAGGCCGAAGGTGAACCCCTT TGGGGAAGCCAAACCAAGGGAGGTTTTGCTCGCCGAGCGAGGTGCTGATTGGCGTAAGATTGATCTTGAATTGGAGCGTC GCGGGGTTGACAGGCCTGAGACGGAGGAGGAAAAATTATTAAAAGAAGAAATTGATAATTTGAAGAAGGAACTCGAGAAA GAGCCTAAAATGAATTCAAATCAGGAATCTGCTGATGAGGCTGGTGCAAATCAAACTGGTGCGCATGCACTGTTACTACA AAAAGAAAGGGAGCTGGAACTTCTTATCCATGATTTAGATGACAAAGTTCGTTTTGGGCAGAAAGCTGTTGATAGGCCAG GTTCATCAGCAGGAAGGACTCCTGTTTTATCTGATAGGCCGCCATCTCGCTCTGGCTCATTTGAGGATTCCAGAAGTGTG GATTTTTCAGACCGCCCTCGATCCCGCGGCACAGGAGATGCTTGGATGCGTCCTAGTGACGACCGAAGACAGTTTCAAGG TAGCAGGGAACGAGGGTTTTTTTCAGGCAGCAGAGACATGGATAGCAGGTCAAGGTCAAGAGAAAGATGGTGA
Protein sequence (LotjaGi4g1v0392900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKPWGNIGAWAADSERAEEEEREATAAAESQSFPSLKEAVTVKPKKGKKMTLSEFNMGGFNSSGVEKLTPAEMLRLPTG PKERSAEEMQSSRYGGGGFSSFDRGSRRPERDGDGSWGAGRRSYGGFDDERRGPPSSRVSELDQPSRADEVDNWASMKKS LPSLDSGRGNRYGGGGGGGGGGFGAGGGGGGFGAGGGGGGFGGGSRADGVDNWMSGKKPLPSTAPPPARSSGYSGFRDSG GDPDRWPRREMEPDRERPRLVLDPRKGDGSVNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKATSRPTS SHSTTSRPSSSEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVDRPETEEEKLLKEEIDNLKKELEK EPKMNSNQESADEAGANQTGAHALLLQKERELELLIHDLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSV DFSDRPRSRGTGDAWMRPSDDRRQFQGSRERGFFSGSRDMDSRSRSRERW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 182 | 182 | 2.0E-71 | ||
| PANTHER | 1 | 530 | 530 | 4.5E-183 | – | |
| PANTHER | 1 | 530 | 530 | 4.5E-183 | ||
| MobiDBLite | 1 | 350 | 350 | - | – | |
| MobiDBLite | 124 | 154 | 31 | - | – | |
| Pfam | 190 | 512 | 323 | 2.6E-139 | ||
| MobiDBLite | 241 | 266 | 26 | - | – | |
| MobiDBLite | 294 | 315 | 22 | - | – | |
| MobiDBLite | 316 | 332 | 17 | - | – | |
| Coils | 381 | 401 | 21 | - | – | |
| MobiDBLite | 396 | 422 | 27 | - | – | |
| MobiDBLite | 445 | 530 | 86 | - | – | |
| MobiDBLite | 477 | 530 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. |
Expression pattern of LotjaGi4g1v0392900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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