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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0393700 |
| Transcript ID | LotjaGi4g1v0393700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/ANTH/VHS superfamily protein, putative; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A1J7GIT1|A0A1J7GIT1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77213839..77215592) extracted from Lotus japonicus Gifu genome v1.2.
CACACAATTAATACAATTAATACGAGAAAAACAATAGCTGTTGATACTTTTAACTAAAAAAAAATACATCATACATTCAA AGAATTAATTAACAATAGCTGTTCATGTATCTGATGTGAATGTGACTGTTGAACAAGAAGAGCAAATGTGAAATGAAAAT GAAATATGCATAAACAAATAAAATCTGACAGAACATTAAATTTCCATAATAACACTGGGCCTCTCCTCCTCCATAGCTAA AGCTTATCACACCTTTTTCAGCATCAATTTTCAATAGAGCTTTGGTGACTGCGTGTGAGTGAGCGGTGACTGTGTTTCTT TTGTCAGTTTCAAACCGCTACAAAAGATTCATAACTAAAGGATGACAAAACTCACCGACCTTATAGGCATACTCAAAGAC AAAGCGTCGCAGAGCAAGGCCGCGTTACTCTCCAAACGCGCCACCCTCTCTCTCTTACGCGCCACTAGCCACGACTCCTT CACTCCTCCCACTCCAAAGCAGCTCTCCACCCTCCTCACCTACGGAAACGGCTCACGCGCCATCGCATCCGCCGCCGTGG AAGTCCTCATGGACCGCCTCCAGGGAACAAACAGCTCCGCCGTCGCCCTCAAGTGCCTCATCGCCGTCCACCACATCATC ACCCACGGCAGCTTCATCCTCCAGGACCAGCTCTCTGTTTACCCCTCCGCCGGCGGTAGAAACTACCTCAACCTCTCCAA CTTCCGGCGCAACACCGATCCCACCTCATGGGAGCTCTCTTCCTGGGTGCGGTGGTTCGCGCAACACATCGAACAGCTTC TCTGCACCTCCAGGATCATCGGATTCTTCCTCGGAAACGCTGATTCCGATAGCGACAGCGGCGAGAGAGTGTCGGGTCTG ACAAACTCCGATTTGTTGGCGGAGCTTGATTCTTTGGTGGCGGTGGTTGAGGGGATTTGCAAGAGACCGAACGCTGGTTC CAGCAGAGGGAACAAATTGGTGGATGAGATTGTGAAGCTGGTGCGTGGGGATTGGGTGGTGATTCAAACCGAGGTGTGTG TTCGGATTCGTGAGTTCGGGGAGAGATTGGGGTTGTTTGAGTTTGGGGAGGCGGTGGAATTGGGTTGTTGTTTGAAGAGA TTGGCGGAGTGCAGGGAGAAGGTGACGGCGTTGGAGGCGGCGGAGGCAGAGAGGTTGTGGGATTTAGCGACGGAGTTAAG GGGGAGAATTGCGGTGGCGGTGTTCAAGGAAGGGGGTAAGGTGGTGAAGGAGGGAAGAAAATGCAGAGTCAGTGAGTCAG ATCGGTTTTCTCGTGGAGTTCTCAATTCCCATGATGGACTCAGGTTTCCCTCTGAAAGGTTTTTGTGAGCATTTGTGTAT TGTAATTGTGAATACTACAACAAAGCCATTTTTCACACATTTCTTGTGATAGATATACACACTTGTATGCAATGGGGAAA GTTTTTGTTTGTGTAGGATTGATTGCATTATGGAGATAATCAGAATTGTTGGAAGACTTGTGAGAAGAAACAAATCAATA CTCGTTGTCATGTGTGGAATATAAATGTAGAGAACAAATATGTAGCAAATGAGAAGTTGAGATGGATCTTTTATGGGTTT AGGGTAAATTATGAACGGTTAAAGTTAACAGTAATTTGAATTATTGACAGTTTAATTAATAATTTTAGTTATTGATATTT GATATCCTATGGTTGGTTAGAATGACACATGTTCGTCGATATTTGCCATCGGCGGTGGTGCCCCTCTTGTGCAA
CDS sequence (LotjaGi4g1v0393700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAACTCACCGACCTTATAGGCATACTCAAAGACAAAGCGTCGCAGAGCAAGGCCGCGTTACTCTCCAAACGCGC CACCCTCTCTCTCTTACGCGCCACTAGCCACGACTCCTTCACTCCTCCCACTCCAAAGCAGCTCTCCACCCTCCTCACCT ACGGAAACGGCTCACGCGCCATCGCATCCGCCGCCGTGGAAGTCCTCATGGACCGCCTCCAGGGAACAAACAGCTCCGCC GTCGCCCTCAAGTGCCTCATCGCCGTCCACCACATCATCACCCACGGCAGCTTCATCCTCCAGGACCAGCTCTCTGTTTA CCCCTCCGCCGGCGGTAGAAACTACCTCAACCTCTCCAACTTCCGGCGCAACACCGATCCCACCTCATGGGAGCTCTCTT CCTGGGTGCGGTGGTTCGCGCAACACATCGAACAGCTTCTCTGCACCTCCAGGATCATCGGATTCTTCCTCGGAAACGCT GATTCCGATAGCGACAGCGGCGAGAGAGTGTCGGGTCTGACAAACTCCGATTTGTTGGCGGAGCTTGATTCTTTGGTGGC GGTGGTTGAGGGGATTTGCAAGAGACCGAACGCTGGTTCCAGCAGAGGGAACAAATTGGTGGATGAGATTGTGAAGCTGG TGCGTGGGGATTGGGTGGTGATTCAAACCGAGGTGTGTGTTCGGATTCGTGAGTTCGGGGAGAGATTGGGGTTGTTTGAG TTTGGGGAGGCGGTGGAATTGGGTTGTTGTTTGAAGAGATTGGCGGAGTGCAGGGAGAAGGTGACGGCGTTGGAGGCGGC GGAGGCAGAGAGGTTGTGGGATTTAGCGACGGAGTTAAGGGGGAGAATTGCGGTGGCGGTGTTCAAGGAAGGGGGTAAGG TGGTGAAGGAGGGAAGAAAATGCAGAGTCAGTGAGTCAGATCGGTTTTCTCGTGGAGTTCTCAATTCCCATGATGGACTC AGGTTTCCCTCTGAAAGGTTTTTGTGA
Protein sequence (LotjaGi4g1v0393700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKLTDLIGILKDKASQSKAALLSKRATLSLLRATSHDSFTPPTPKQLSTLLTYGNGSRAIASAAVEVLMDRLQGTNSSA VALKCLIAVHHIITHGSFILQDQLSVYPSAGGRNYLNLSNFRRNTDPTSWELSSWVRWFAQHIEQLLCTSRIIGFFLGNA DSDSDSGERVSGLTNSDLLAELDSLVAVVEGICKRPNAGSSRGNKLVDEIVKLVRGDWVVIQTEVCVRIREFGERLGLFE FGEAVELGCCLKRLAECREKVTALEAAEAERLWDLATELRGRIAVAVFKEGGKVVKEGRKCRVSESDRFSRGVLNSHDGL RFPSERFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 328 | 327 | 1.1E-158 | – | |
| PANTHER | 2 | 328 | 327 | 1.1E-158 | – | |
| Gene3D | 3 | 155 | 153 | 2.9E-28 | ||
| ProSiteProfiles | 19 | 157 | 139 | 14.057 | ||
| SMART | 25 | 157 | 133 | 8.5E-4 | ||
| CDD | 29 | 150 | 122 | 2.24285E-43 | – | |
| SUPERFAMILY | 29 | 154 | 126 | 3.24E-20 | ||
| Pfam | 30 | 223 | 194 | 3.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. |
Expression pattern of LotjaGi4g1v0393700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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