Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0394900 |
| Transcript ID | LotjaGi4g1v0394900.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SCAI; TAIR: AT4G40050.2 signal transducer, putative (DUF3550/UPF0682); Swiss-Prot: sp|Q8N9R8|SCAI_HUMAN Protein SCAI; TrEMBL-Plants: tr|A0A151S3H1|A0A151S3H1_CAJCA Protein SCAI; Found in the gene: LotjaGi4g1v0394900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77320312..77324996) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCGGGGACAGCGACGTTACGCTGCAGACGTTCCGAGCGCTGGTGGAGAGCGCTGACCGGAAGTTCGCCAAGGTTCG CGACGTACCGGCGTACGGCCGCGTGAGCCAGAACCACTTCTTCCACAAGGTCTTCAAAGCCTACACGCGCCTCTGGAAGT TTCAGCAGGAGAATCGCGCGAAGCTGATGCGGTGCGGTCTCAAACGCTGGGAAATCGGCGAGATCGCGAGCCGAATCGGC CAGTTCTACTTCGGCCAGTACATGAGGACTAGCGATAGCAGGTTCCTCGTTGAAGCCTACGTCTTCTACGAAGCTATACT CAGCAGAAGGTACTTCGAAGGATCCGAAGCTTCAGCCAAAGATCTGGTAGTTCGCTCCAAGGAGTTGCGATTCTACGCGA GGTTTTTGCTGGTTTCGTTGATTTTGAACCGCGCCGAGATGGTCAACCACCTCAGGGACCGCTTTGTAGCGTTGGTTGAT GATTGCAAGAGTAACTTCCGGGTAATACATTGTTTTTCTTCTGAAATTGGAGCTGAATTGCTTCGTGTTCATAGGAGCTA TCTATTTTTAGCTTAATTTTCGGTCCGTTTGGGAGTGAATTAGTATTTATCGATTTATGCTGTGTTTCCTTTTTGGAATT CATCACTAAAATTGCTGTAACTTAGAGATTAAGCATGAAGCTTCTCTGTTTAGATTATTGGTTTGCTCATGTTCATTGTT TCATGATTGATTTAGAGCTCATAAGGTTGATTTGATAATAATTTGAATAGCATCTTACACTTTAGGTTATATGATTGGGG AAAACTGTGATGTTTTGATGGTCTTGATAGTGGGGTGAGTGATGGGGTTAGTAGATTCCCATGTGATAGTAAAATTTTGT TTGTTTCATTGATTAATGCCGTTGATTGTGCAGGACATCACTGTAGTTAGTATGACCTCTATTTCATTGACACCTGGACC TACAGAACAGGGAAAAATAGATGGAGGGATAGAGTAGATGAGATTTATGTCTTTAAAACAAAGAGATTGAAAGCTTGTTT AAATTAATATATGTCAATTTTGATGACATGTTTGGTGATTTGGTCATAATCATAGCCTTAGTCATGAGCTTCTTGTCTGG TTTGACCTGATTATCATATGAGCTATGAAGGTGATCAGTGGTCTTATATAATGGGTTCTATCAAGGTTTTTCGAGGTTCT TCAATTTTACTGAAATGAAGAAAATTAAATGGTGAAAGTTTCAAAGAAAATAGCCTCCTAGAACCAATTAATGCTTGAAG CAAACTGAGTTCCAAGTAGTGCTCCACTATGGTATACTGACAGAACAAAATATTCTGAAGTTCCTAGATGTATTTACATG TGTTGATTTGATAAGTGGAGTACAAACCAAGAGAAAAAAAGGTGTTGTGATGAAAATAACAATACTTCATTCAATGCTCA TAATGGTCAATTGACTAGATTTGGTAAATTTGTCAAATGAGTTTAATATTTTGTTTTTGGCCCAAGACCTCCATCATTTC TGTGCTGTTCTGATTTAGGTATTTATCAGCTACAATTTATTTCAATACATTCTTATTTTGCATATATGATTGTTATTGTG TTGGATTTGAAAGTTAAGCTTCCACTTTTTAATCTGATTGAAATGTATAATTTTTGTTTTTCTTACCATATCCTTTAGTA TTTTGAACTTTTAGTGTTTAACTAAAAGATGTCATAAAACTTGATCATTATATAGTTCCATTGATGCTTTGTTTCCACTA TTCATCCTGAGAAAGGAATATCTCTGTATGTATTACTTGTTTGACTTGATGAATATGAATTATTTATTTATTTTCAGGAA ACTAACTTTAAAGAATGGAAGCAAGTGGTGCAAGAAATTGTCCGCTTCACGAAAGTAGACAAGGGCTTTGGCCTCAGGCC TTTGCGTTATTGTGCCACATTTGATTCTCATAAGGCTTCTTTTCCTTATGTGGCTCGTTTTCATGCAAAGAGAGTTTTGA AATTTCATGATGCATTGTTGACAAGCTATCATCGAAATGAGGTTAATAGTGATTCATGTTGTCTTGATGGTTCTTAAATT TGTATTACTAAATTAATTTACTTGCTGAAAGGGAAGTTTTTGAATCTTCATGTATTCTCACTTTCAGGTAAAATTTGCTG AGCTTACATTGGACATCTATAGAATGATACAGTGTTTAGAATGGGAGCCTAGCGGTTCGTTCTACCAAAAGCATACGGCT AAACCTCATGAAAATGGTGACTCAATTGATCATTCAGCAACTTCTGCGATAATAGATATGAATCTTGCTGCAGATATGAC AGATCCAACTATACCTCCTAATCCTAGAAAGGCTACCTTGTATCGTCCATCTGTGACACATGTGATAGCTGTGAGTTTCA TGCCTAGGGGAAATTTGAGTAACATAGTTTGAGAAACATGCATGGTTATCTCTGCTAAAATTTATTGACTGTTCTGTTAA CTAGGCCTTGTCAACACCTAATAACATTGCATGGGATTTTTATGGCTTCTTTCTCATGACTTGGTTATTTATATCTGCTT CTGTTCTGCTTCATTGGTTGTACTGTATATTATAATATGTTTGTTGTATGTCTGTTTGTCCCAACTGAAAGATTTGTGAA CTGCTATTGAGTTTATCACTTGTTAAATATGGCTGTTTTTGTCTTTTCAATGCAGTATTTCACTGGCTGTTGCGATTGTT ATTCCTCATATTGAGTTCATGTTGTATGCAGGTTATGGCAACAATTTGTGAGGAACTGCCACCAGACAGTGTTGTGCTAG TATATCTTTCAGCCTCAGGTTTACATTTGCCCCGTTCTTCAAGTATAAATAATCAGTTTGTAGGTCTTGTCCTGTTATGC TATGTGTTAGTTACCTTAATGATCACCCATACAGGGAAGGCTGGTCTCAATAATGTCTCTCAGATGGAAAGTTCTGAAGG GTCATCCAAATCAAGACACAAAGTCTTTTCTCAGTCTTCCCAACAAATGAATTCTGGAACTACTGAATCTCAAAATAATG GCCAGAGGGAAATGATCTGTCATGACAGTTGTCTGTGGTTTGGTCCCAAAGGAAATAGTGGTAGGTATCTGCACTGAGTC TTTTCTCTGTCGAATTTGTGTTATTTTTCCAGGCAATGTTATGAAAATGTAAAATGCTTTTCTTCCTTTGTTGGTCTAGT GTTAATTGTTTGTTATGGAAAAAACAATTACCTTTATTGTAGCTGCACTTACATATGCTGCATTTGAATTTTCAGGTTTG AATAACCTCTACCCTGGTGATCTTATTCCCTTCACTCGGAAACCTCTTTTCTTGATTATTGATAGTGATAACAGCCATGC ATTCAAGGCAGGTTTGTCCAAACTTTTTATTAGTTTCCTGGAAGCTTTGTTAGACTGAGCTGTTTTGTGTATTCCTCGAA TCTAATTTTACTTGTTAATGACGTGTTGAAGTTTGTAATTAGATTTTTACAGCATAATCTGACAATATTTTGTAACATTT GAAGATGAATTTCAACACACTAGCCATGTGAAATCCTGCCTTGTTGATTTTCTTTAACAATTTGAACCTGAATGTAGAAC TTTTTCCGAAGACAGTTGAATTGAGAAAGAATCTTAAATTATCCCATGGTGTTGTTATCATTCATCGTGTAATTACAAAA GAAATGATAAATACAGAATATTTCTGGGTTAGAGATAATTTTGTTATAGTTTTTCAGGGGAGGCCGTCTTTATGGAATAT TTGCTTGTTGGCTTTTCCCATGTTAAATGTAGTATATTGGAAGATGCTGTCTTTTTGAATCTTGAGGATTGATTGACAAG TGTCATTATCTATCTGCATTGACATGTTTTAATTGATTGCGGACTTAATAATGATTGCAGGTTTTACATGGTGCTGAAAG AGGAGAGGCGGCTGCTCTATTTCTTTCACCTTTAAAGCCAATTTTTAAGAACCTGTCTGATGTAAATTCACATAATGGAA GCCAATTTACTTTTTTCTTGACTGCTCCTTTATCAGCATTTTGCCAAATGATTGGTCTATACCCCAGTGAGGCTGATATA GTAAGTATATTTTAATAATCTTCAAACTTTTTCAAATCAACTTTAATTCTTGGTGCCTTGGTGGTCTAATTGTTGTGTTA ACCCAAGGATGTCTACGAGGAAGCTGAGAACATAATCTCAAATGCTTTCACTGAGTGGGAAACAATTCTTTGCTCATCAA CTATCATGGATTTAGTATGGGCACAAGTTATACCTGATCCATTTTTAAGGCGGCTTATTCTAAGGTATTTACTCTCTAGT TTTTCATGAATTAGCCGATGCATTATTTTCTATTTCCATTGGGAATTGGTTTTGCCATTTTGGTGAATGACAGTTTCAGG CTTGCATTTGACTGCCACCTCGACATTTTTTAGGCCCTAGTAAATTGATGTTTACTAAATGAACTTACTGTATGATGTGT TGTATCATTTATCTACAGATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAGTGAATTGTATG TGCCGCTTTGCTTACCCCATTTACCCACTTCAGTTGCACCGAAGGCTGAGGCTGTGCGTTCTGCGGTCGTGCAACTTGCC ATGCACTTTGATGTCGCTGATTCTTTTCACTTTACAGATACATAA
CDS sequence (LotjaGi4g1v0394900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGGGGACAGCGACGTTACGCTGCAGACGTTCCGAGCGCTGGTGGAGAGCGCTGACCGGAAGTTCGCCAAGGTTCG CGACGTACCGGCGTACGGCCGCGTGAGCCAGAACCACTTCTTCCACAAGGTCTTCAAAGCCTACACGCGCCTCTGGAAGT TTCAGCAGGAGAATCGCGCGAAGCTGATGCGGTGCGGTCTCAAACGCTGGGAAATCGGCGAGATCGCGAGCCGAATCGGC CAGTTCTACTTCGGCCAGTACATGAGGACTAGCGATAGCAGGTTCCTCGTTGAAGCCTACGTCTTCTACGAAGCTATACT CAGCAGAAGGTACTTCGAAGGATCCGAAGCTTCAGCCAAAGATCTGGTAGTTCGCTCCAAGGAGTTGCGATTCTACGCGA GGTTTTTGCTGGTTTCGTTGATTTTGAACCGCGCCGAGATGGTCAACCACCTCAGGGACCGCTTTGTAGCGTTGGTTGAT GATTGCAAGAGTAACTTCCGGGAAACTAACTTTAAAGAATGGAAGCAAGTGGTGCAAGAAATTGTCCGCTTCACGAAAGT AGACAAGGGCTTTGGCCTCAGGCCTTTGCGTTATTGTGCCACATTTGATTCTCATAAGGCTTCTTTTCCTTATGTGGCTC GTTTTCATGCAAAGAGAGTTTTGAAATTTCATGATGCATTGTTGACAAGCTATCATCGAAATGAGGTAAAATTTGCTGAG CTTACATTGGACATCTATAGAATGATACAGTGTTTAGAATGGGAGCCTAGCGGTTCGTTCTACCAAAAGCATACGGCTAA ACCTCATGAAAATGGTGACTCAATTGATCATTCAGCAACTTCTGCGATAATAGATATGAATCTTGCTGCAGATATGACAG ATCCAACTATACCTCCTAATCCTAGAAAGGCTACCTTGTATCGTCCATCTGTGACACATGTGATAGCTGTTATGGCAACA ATTTGTGAGGAACTGCCACCAGACAGTGTTGTGCTAGTATATCTTTCAGCCTCAGGGAAGGCTGGTCTCAATAATGTCTC TCAGATGGAAAGTTCTGAAGGGTCATCCAAATCAAGACACAAAGTCTTTTCTCAGTCTTCCCAACAAATGAATTCTGGAA CTACTGAATCTCAAAATAATGGCCAGAGGGAAATGATCTGTCATGACAGTTGTCTGTGGTTTGGTCCCAAAGGAAATAGT GGTTTGAATAACCTCTACCCTGGTGATCTTATTCCCTTCACTCGGAAACCTCTTTTCTTGATTATTGATAGTGATAACAG CCATGCATTCAAGGCAGGTTTGTCCAAACTTTTTATTAGTTTCCTGGAAGTTTTACATGGTCATTTTGCCAAATGA
Protein sequence (LotjaGi4g1v0394900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGDSDVTLQTFRALVESADRKFAKVRDVPAYGRVSQNHFFHKVFKAYTRLWKFQQENRAKLMRCGLKRWEIGEIASRIG QFYFGQYMRTSDSRFLVEAYVFYEAILSRRYFEGSEASAKDLVVRSKELRFYARFLLVSLILNRAEMVNHLRDRFVALVD DCKSNFRETNFKEWKQVVQEIVRFTKVDKGFGLRPLRYCATFDSHKASFPYVARFHAKRVLKFHDALLTSYHRNEVKFAE LTLDIYRMIQCLEWEPSGSFYQKHTAKPHENGDSIDHSATSAIIDMNLAADMTDPTIPPNPRKATLYRPSVTHVIAVMAT ICEELPPDSVVLVYLSASGKAGLNNVSQMESSEGSSKSRHKVFSQSSQQMNSGTTESQNNGQREMICHDSCLWFGPKGNS GLNNLYPGDLIPFTRKPLFLIIDSDNSHAFKAGLSKLFISFLEVLHGHFAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 432 | 429 | 2.4E-228 | – | |
| PANTHER | 4 | 432 | 429 | 2.4E-228 | – | |
| Pfam | 15 | 432 | 418 | 9.8E-158 | ||
| MobiDBLite | 346 | 381 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription corepressor activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A third class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi4g1v0394900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…