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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395200 |
| Transcript ID | LotjaGi4g1v0395200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7H7J9|A0A1J7H7J9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0395200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77343392..77345018) extracted from Lotus japonicus Gifu genome v1.2.
CTTGATTAATGATTGACACCCCTGGCCTGGTTCACCACTAGATATGCATGTTAATTGATATCCATGTACCCTTGTGCTTC ATATTCGGGCCACCTCCAAGTTGGGCCAGAGAGTTATAACCTTTGTCCAAACACTGCTTAAATAAGTGAGCAATAAGGGT TTCTCTAACACGGATATCGCCATAGCAGCTGTGGATGAAGATGGGGTTAGAAATTCTCAAGTATTCCAGTTTGTTTGAAT CACTAACAAGGTTTATTTACTATCTCCTGGGACGACGAGGACCACCACCAAAATCTGAACTCGAACTCCTCCCGTTGCTC CCTGAAGAACTGGTGGTTGAAATCTTGTCATGTCTTCCAGTAAAATCTCTCATGCGATTCAAGTCTGTGTCCAAATCATG GAAGTCTCTCATGTCTGATTCTCAGTTAGTAAAACTGCACCTTCACCGTTCATTTTGTAGAATGAATGCAGATTTTTCCC ATGTCCGCTTTGTCACAGAATGTGACATCCATAATTCAGGATCATCATCATATGTCTCACCTCGCTCTATGACTTCATTA TTGGAAAGAGCAGACACTGAAGCAGAATCTGCTGATATCTCCGGGTACCGGTTGATTGGAGTGTGCAACGGGTTGATTTG TTTGAAAAGTACAAAGTTTCGTAGAAAATATTGCTACCACACGGTCTATTTCTGGAACCCAGCAACAAGGTCACTATCTA GTTCCCCAACTTTACGTAGCTTTGGTGATTTTGGGTTTGGTTATGATTCTTCAACGGACACCTACAAAGTGGTGCATGTG TACCCTGAGCAGACAGCACTTCATGTTTACAAAATGGGTGATAATTGTTGGAGGACAATTCATCTCTTCCCTGCTCCCAA TTGGATTTTGCGTTTACCATCATATTCATATTCTGTGAGTAACACTATTAATTGGTTAGGAGAGATGTTTTCGGAGAATG ATACTGATCTTATTGATTGCTGCTACAAAATTGTTTCCTTTGATTTGGGAAAACCAAAGTATACACAATTGGCATTGCCT TTTTGTTATGGAGAGGAAGATATAGACAACTATTTTAAGCCAATTCTTGGAGTATTAAGAGGCTGTCTATGTATTTCTGA AAATAACAAAACACGGAATTTTGCCTTATGGCAAATGAAGGAGTTTGGAGTACACCAATCTTGGACTAAGTTGTTTAGCA TTAATGGCTCTGAAAAAATTCTTGCGTGGCCTTGTTTTGCAATCAGTGTATTTGATAATGGTGATGCCCTACTATTGTCG GTTTCTCGTGCAAATGGAGTTCTCTATACCCTTAGAGATAGCAAATTAGAACGCAAGAAAATTGCTGATGAAGTTCGTTT TTATTATGCCGAAAATTACATTGAAAGTTTGGTTTTACCGAAATTTAAGTAAGTATATTCAGTACATTTTATTTAGTACT TTCTTCGTCATGTACTGTTCTTAATTCATTGTTACAGATAACTTGTTGAATATTTGAATTTATATAGCTTTTAGATTTGT TGGATTTTTAAATATTGCTACTTTGCTAGTGATCAACCTTTTAAATATTGTAGCTGAGATCAAGTGAGGATGTATAATAC CAGTTAGCCCTCTGAATGATATTTCCT
CDS sequence (LotjaGi4g1v0395200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGGGGTTAGAAATTCTCAAGTATTCCAGTTTGTTTGAATCACTAACAAGGTTTATTTACTATCTCCTGGGACG ACGAGGACCACCACCAAAATCTGAACTCGAACTCCTCCCGTTGCTCCCTGAAGAACTGGTGGTTGAAATCTTGTCATGTC TTCCAGTAAAATCTCTCATGCGATTCAAGTCTGTGTCCAAATCATGGAAGTCTCTCATGTCTGATTCTCAGTTAGTAAAA CTGCACCTTCACCGTTCATTTTGTAGAATGAATGCAGATTTTTCCCATGTCCGCTTTGTCACAGAATGTGACATCCATAA TTCAGGATCATCATCATATGTCTCACCTCGCTCTATGACTTCATTATTGGAAAGAGCAGACACTGAAGCAGAATCTGCTG ATATCTCCGGGTACCGGTTGATTGGAGTGTGCAACGGGTTGATTTGTTTGAAAAGTACAAAGTTTCGTAGAAAATATTGC TACCACACGGTCTATTTCTGGAACCCAGCAACAAGGTCACTATCTAGTTCCCCAACTTTACGTAGCTTTGGTGATTTTGG GTTTGGTTATGATTCTTCAACGGACACCTACAAAGTGGTGCATGTGTACCCTGAGCAGACAGCACTTCATGTTTACAAAA TGGGTGATAATTGTTGGAGGACAATTCATCTCTTCCCTGCTCCCAATTGGATTTTGCGTTTACCATCATATTCATATTCT GTGAGTAACACTATTAATTGGTTAGGAGAGATGTTTTCGGAGAATGATACTGATCTTATTGATTGCTGCTACAAAATTGT TTCCTTTGATTTGGGAAAACCAAAGTATACACAATTGGCATTGCCTTTTTGTTATGGAGAGGAAGATATAGACAACTATT TTAAGCCAATTCTTGGAGTATTAAGAGGCTGTCTATGTATTTCTGAAAATAACAAAACACGGAATTTTGCCTTATGGCAA ATGAAGGAGTTTGGAGTACACCAATCTTGGACTAAGTTGTTTAGCATTAATGGCTCTGAAAAAATTCTTGCGTGGCCTTG TTTTGCAATCAGTGTATTTGATAATGGTGATGCCCTACTATTGTCGGTTTCTCGTGCAAATGGAGTTCTCTATACCCTTA GAGATAGCAAATTAGAACGCAAGAAAATTGCTGATGAAGTTCGTTTTTATTATGCCGAAAATTACATTGAAAGTTTGGTT TTACCGAAATTTAAGTAA
Protein sequence (LotjaGi4g1v0395200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMGLEILKYSSLFESLTRFIYYLLGRRGPPPKSELELLPLLPEELVVEILSCLPVKSLMRFKSVSKSWKSLMSDSQLVK LHLHRSFCRMNADFSHVRFVTECDIHNSGSSSYVSPRSMTSLLERADTEAESADISGYRLIGVCNGLICLKSTKFRRKYC YHTVYFWNPATRSLSSSPTLRSFGDFGFGYDSSTDTYKVVHVYPEQTALHVYKMGDNCWRTIHLFPAPNWILRLPSYSYS VSNTINWLGEMFSENDTDLIDCCYKIVSFDLGKPKYTQLALPFCYGEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQ MKEFGVHQSWTKLFSINGSEKILAWPCFAISVFDNGDALLLSVSRANGVLYTLRDSKLERKKIADEVRFYYAENYIESLV LPKFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 30 | 126 | 97 | 6.0E-12 | – | |
| SUPERFAMILY | 35 | 90 | 56 | 7.72E-14 | ||
| ProSiteProfiles | 36 | 82 | 47 | 10.849 | ||
| PANTHER | 40 | 346 | 307 | 4.9E-39 | – | |
| PANTHER | 40 | 346 | 307 | 4.9E-39 | – | |
| Pfam | 40 | 80 | 41 | 2.2E-7 | ||
| SMART | 42 | 82 | 41 | 2.1E-8 | ||
| TIGRFAM | 143 | 364 | 222 | 7.0E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0395200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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