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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0397100 |
| Transcript ID | LotjaGi4g1v0397100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT5G10250.2 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LFU0|DOT3_ARATH BTB/POZ domain-containing protein DOT3; TrEMBL-Plants: tr|A0A0L9TJH9|A0A0L9TJH9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0397100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77481451..77484961) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTAACCAAGTATGGTTCTCCCCCACCCCTCTTATATTCTCCTCACTTGCCGTACTTTTAACATGTTTGGAAATCTT TCTACAATTGATTCTAAAACTAAAATCAATTCTGGAGAGAATCTTCTGAAAGTGGCTTATGGGTGCCAGAATTGGTTTAG AGAAAAAATAAGCTGATCCAAACATATTAAAATGTCTAACCTCTACCACTTCTTTGTATATGGGTCTGTTTTTTTCTCTT TTATTTTCTGATTTGAGATTGTGCAGGTTCATTGCTCCGCAAATCCCAACAGACTCTTCAATTCAAGTCCAGGAAATCAT TTATAATGTACACAAGGTACATATAACATCATAGACATACCTTATTAATGTTGAGAATCATTGACCTTCCCTCGTGATAT TGGTTGTCATCAGCAGTCAATATACTAGACATGAAAATGATATCATCATATCCCTTTCTAAGTGTCTAGTAGTAAAATCC CTCATCACACTGTCATCTCAATTAGTGACAAACTGGTGAAGAGAACAATTCTATGATAGGTTGCATAAGATACATTGATT CCTTTTCTTCCTAGAGTGTATATTTGACTATTTGTGTGTGCTGTGCATGTCATGTATCTCATTTCCCCTTTTCAGATATT AAAAAATGAAAAAAAAAAAGTTTCTCAAGAGATAAACAGAACATCAGAGACAGATTAGGAATCCTCTTAAAACAAATAGG AGATAATAACAGGATTTTTTTAATTACATTTTAGTTGATATTTTTCAGTGATAAAAACCTACTATTTTTATTTTGTTTCA TGTTTTCAAGATTTGGTGGACAGAGGATCTTGGTCATTGGTGGAATATATATGTATATGTATATATATATATATATATAT ATATATATATTCACAGTTTCCTTAACAAAATCTTGAAAACAACAAATGGCATAAAAACATGGTCAGCTTGTTGTAATGAA AATACATCAAGTGAATATAAAGATAACAAAGAAACCAAACACCTCACTGAGCAACTTATCTTAAACATTTCATATGTTGG CTATTTTTTCTGTAACAGTACCCCTTGATATCAAAATGTGGCTACATAGGACGACTGGAGGTTCAGCCATTGATATCAAG TTCTAGCAAAGTGCTTAAGCTTGAAAACTTTCCAGGAGGACCTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGTC TCCATGTAGACTTCAAACCAGATAACATAGCTGCAATAAGATGTGCATCAGAATTCCTAGAGATGACTGAGGATCTAGAA GAAGGAAATCTCATTTCCAAGACAGAAGCTTTTCTCACTTTTGTTGTGCTCTCTTCATGGAAAGACACTGTCACTGTTCT AAAATCTTGTGAAAATCTATCTCCATGGGCTGAAAACCTCCAAATTGTAAGAAGATGTTGTGATTCCATTGCTTGGAAGG CTTCTAAAGATGCTCCTACAATTGAGGATGCAGCATCTAATCAAGAAAACTGGTGGTTCAATGATGTTGCCGCCTTCCGC ATCGACCATTTTATGCGTATTATTTCAGCAATAAGGGCAAAAGAAACCAAACCAGAGATCATTGGTAAATGTATCATGCA ATACGCAAAGAGATGGCTACCGGGAATGGATGAGGAGCTGGAAGGGCTAAGAGGATATGGACATGGAAAAAGTAACCTAC ACTTCACTGTTTTTAGTGGGAAGGAAAAAGAAAGCAGTGCACACAGCAAGCAGCAAAAGACAATTATTGAAAGCCTAGTA AGCATACTTCCTCCTCAACAAGAAGCTGTCCCATGTAAGTTCTTGTTGCAGATGTTAAAGATGGCCATGATGTATTCTGT ATCACCAGCTCTCACTTCGGACCTCGAAAAAAGAGTTGGTGTGGTGTTGGAAGATGCTGAGGTGAATGATCTTTTAATTC CAAGATATCAAAATGGAGATCAAGGAAAAACTGTCAAGTGAGTATCTAACCATTCTTTCATTAATGCAAAAAAATGACTG ATGATACTTGCTGAAAAATCCCACATTGATTAGAGACATGGTCAAATAAGTGTTATAAAGGGTAGAGCAATCACCCCATA GCTAGCTTTTGGGGTAGGCAGTAGAGTTAGGCCTAAATTGAAATCTAATAATACTAAATGCAATCCTTTTATTTTCCTAT TCATGTGCAGCATGAATAATTCATCTGAAGAGTGCACTATGGAAGACATAGATGTGGTGCAACGAATTGTTGAATACTTC CTGATGCATGAACAACAGCAGATGCAACTGCAACAGAAGACTGCGAAATTCAATATTAGTAGGCTCTTGGACAATTACCT AGCTGAAATTGCAAGAGATCCAAATCTTTCAATCACCAAGTTCCAAGTTCTAGCTGAATTGCTACCAGAAAACACTCGAT CGTTTGATGATGGTCTATATAGAGCCATTGACACCTACCTCAAGGTCATCCTTTTAACTCTTATTTTCTTGTGTTTCAGT TTCCTGTTTTGAGTGTTGTAAAAAGGATTTCAAAACAAAGTTTTGATACACTGATATTAACATCTCTCCAGACCCATCCT TCACTGACCGAGCATGATCGTAGAAGACTGTGCAAAACAATGAACTGTGAGAAACTCTCACTTGATGCATGTATGCATGC TGCACAAAACGACCGATTGCCTTTAAGAGCTGTTGTCCAGGTAAAGTTTCAGGCTCTCTGGAACCTAATTTAAAACTAAT TTCAGCTTCATACATGATAAATTAGAAGTGGCGAGTTAAGATTTCAAGTTCTTCAGAAAAAAATGATGAAATCATCATGA AACGCAATTCAGATTAGTAGCATCCGTTAACTGAGAAACACAGTAACCCAAGTGAAAACAATGTGGTATCTTTGTAATTA AAATTGACAACAGAAAATGGAAATAGAAAATGAAAACCAAACATGCCCCTAAGTCCAATTTCAATAAGAAATTTAAAATT ATGCAAATAGCACTGAGGATCTGGTTCACAAATATAGATCCCATCTAAGAAAGTGTGGGTAGCAAAACAAAAGCAAGAGA AGGAGCCAAATGGTACTTTTAGACCTAATATGACCAAATGGTGATTCAGCTTAAAAGTTGTCACCTGAATGAGAAAGTAT ACTAGTGCAGGTTTTATTTCAGGAGCAAGTAAAGTTGAGGGCGGCAATGCAAGAGAAGGAGCCAGCACAAAGTGGAATCC AGACTGAACAGGACGAAAATCAGATATCTGCAACTATCGACATAAAAACACTCAAAGCAGAACTTGAGAATGTAAAGTCT AAGATGGTAGAACTGCAGAGTGACTATTTTGAGTTGCAACAAGAGTATGAAAAGTTAAGCAACAACAAGCCAAAGAATTC ATCAGCGTGGAGTTTTAATTGGCGGAAGATTAAGAACTCCTTTCATACAAAACCAGCAGGAGTTGAAACTGGAGATGGAC AGGATAAGCCCAAGACACCAAACCAGACTCGAAGTAAAGAAACCCCTAGAAGAAGGCAATCCATGTCTTAA
CDS sequence (LotjaGi4g1v0397100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACCAAGTATGGTTCATTGCTCCGCAAATCCCAACAGACTCTTCAATTCAAGTCCAGGAAATCATTTATAATGT ACACAAGTACCCCTTGATATCAAAATGTGGCTACATAGGACGACTGGAGGTTCAGCCATTGATATCAAGTTCTAGCAAAG TGCTTAAGCTTGAAAACTTTCCAGGAGGACCTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGTCTCCATGTAGAC TTCAAACCAGATAACATAGCTGCAATAAGATGTGCATCAGAATTCCTAGAGATGACTGAGGATCTAGAAGAAGGAAATCT CATTTCCAAGACAGAAGCTTTTCTCACTTTTGTTGTGCTCTCTTCATGGAAAGACACTGTCACTGTTCTAAAATCTTGTG AAAATCTATCTCCATGGGCTGAAAACCTCCAAATTGTAAGAAGATGTTGTGATTCCATTGCTTGGAAGGCTTCTAAAGAT GCTCCTACAATTGAGGATGCAGCATCTAATCAAGAAAACTGGTGGTTCAATGATGTTGCCGCCTTCCGCATCGACCATTT TATGCGTATTATTTCAGCAATAAGGGCAAAAGAAACCAAACCAGAGATCATTGGTAAATGTATCATGCAATACGCAAAGA GATGGCTACCGGGAATGGATGAGGAGCTGGAAGGGCTAAGAGGATATGGACATGGAAAAAGTAACCTACACTTCACTGTT TTTAGTGGGAAGGAAAAAGAAAGCAGTGCACACAGCAAGCAGCAAAAGACAATTATTGAAAGCCTAGTAAGCATACTTCC TCCTCAACAAGAAGCTGTCCCATGTAAGTTCTTGTTGCAGATGTTAAAGATGGCCATGATGTATTCTGTATCACCAGCTC TCACTTCGGACCTCGAAAAAAGAGTTGGTGTGGTGTTGGAAGATGCTGAGGTGAATGATCTTTTAATTCCAAGATATCAA AATGGAGATCAAGGAAAAACTGTCAACATGAATAATTCATCTGAAGAGTGCACTATGGAAGACATAGATGTGGTGCAACG AATTGTTGAATACTTCCTGATGCATGAACAACAGCAGATGCAACTGCAACAGAAGACTGCGAAATTCAATATTAGTAGGC TCTTGGACAATTACCTAGCTGAAATTGCAAGAGATCCAAATCTTTCAATCACCAAGTTCCAAGTTCTAGCTGAATTGCTA CCAGAAAACACTCGATCGTTTGATGATGGTCTATATAGAGCCATTGACACCTACCTCAAGACCCATCCTTCACTGACCGA GCATGATCGTAGAAGACTGTGCAAAACAATGAACTGTGAGAAACTCTCACTTGATGCATGTATGCATGCTGCACAAAACG ACCGATTGCCTTTAAGAGCTGTTGTCCAGGTTTTATTTCAGGAGCAAGTAAAGTTGAGGGCGGCAATGCAAGAGAAGGAG CCAGCACAAAGTGGAATCCAGACTGAACAGGACGAAAATCAGATATCTGCAACTATCGACATAAAAACACTCAAAGCAGA ACTTGAGAATGTAAAGTCTAAGATGGTAGAACTGCAGAGTGACTATTTTGAGTTGCAACAAGAGTATGAAAAGTTAAGCA ACAACAAGCCAAAGAATTCATCAGCGTGGAGTTTTAATTGGCGGAAGATTAAGAACTCCTTTCATACAAAACCAGCAGGA GTTGAAACTGGAGATGGACAGGATAAGCCCAAGACACCAAACCAGACTCGAAGTAAAGAAACCCCTAGAAGAAGGCAATC CATGTCTTAA
Protein sequence (LotjaGi4g1v0397100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNQVWFIAPQIPTDSSIQVQEIIYNVHKYPLISKCGYIGRLEVQPLISSSSKVLKLENFPGGPETFETILKFCYGLHVD FKPDNIAAIRCASEFLEMTEDLEEGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWAENLQIVRRCCDSIAWKASKD APTIEDAASNQENWWFNDVAAFRIDHFMRIISAIRAKETKPEIIGKCIMQYAKRWLPGMDEELEGLRGYGHGKSNLHFTV FSGKEKESSAHSKQQKTIIESLVSILPPQQEAVPCKFLLQMLKMAMMYSVSPALTSDLEKRVGVVLEDAEVNDLLIPRYQ NGDQGKTVNMNNSSEECTMEDIDVVQRIVEYFLMHEQQQMQLQQKTAKFNISRLLDNYLAEIARDPNLSITKFQVLAELL PENTRSFDDGLYRAIDTYLKTHPSLTEHDRRRLCKTMNCEKLSLDACMHAAQNDRLPLRAVVQVLFQEQVKLRAAMQEKE PAQSGIQTEQDENQISATIDIKTLKAELENVKSKMVELQSDYFELQQEYEKLSNNKPKNSSAWSFNWRKIKNSFHTKPAG VETGDGQDKPKTPNQTRSKETPRRRQSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 589 | 587 | 1.4E-288 | ||
| PANTHER | 3 | 589 | 587 | 1.4E-288 | – | |
| CDD | 5 | 110 | 106 | 2.52913E-34 | – | |
| SUPERFAMILY | 9 | 100 | 92 | 1.73E-13 | ||
| Gene3D | 10 | 159 | 150 | 2.2E-7 | – | |
| Pfam | 14 | 100 | 87 | 6.7E-5 | ||
| ProSiteProfiles | 14 | 83 | 70 | 8.917 | ||
| Pfam | 173 | 447 | 275 | 4.4E-97 | ||
| ProSiteProfiles | 173 | 471 | 299 | 86.206 | ||
| Coils | 501 | 535 | 35 | - | – | |
| MobiDBLite | 554 | 589 | 36 | - | – | |
| MobiDBLite | 572 | 589 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0397100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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