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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0398000 |
| Transcript ID | LotjaGi4g1v0398000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G39840.1 cell wall integrity/stress response component-like protein; Swiss-Prot: sp|Q9QZR8|PDZD2_RAT PDZ domain-containing protein 2; TrEMBL-Plants: tr|A0A151R740|A0A151R740_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0398000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77558619..77561709) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAATATTTTTTTTTATGAAATAATTGAGTTCAAAAGATAAGGAAAAACGAAATCCGGACGGACCAACCAGAAGCAGC CACGTGGCAGGGCATGACAATTTTTCTCTCTCTCCCCTGCAGACAAGGCGCGTCACGCGCCTTGTCTGGGCGTGCAGGCC ACGCGCCTGCGGTGGCCACTGGCCTTGCGCCACGTGGCACACCGCAGGCTCCTTTTTTTTGTTGAAAATCTTCAACATTT TCTCCCTCTCTCTCCTCTTTCAACCAACTTCAACAAACCATTAAACCTATTAAACACAATTCAACACAATTCAACAACAC TTTCAACCATCCATTGTGGATGGTCTAAGATGAGAATAGTCATTAAATTAAATTGTGAATGAGTACTTAGTAATTCACAT AGGTCATTTACAGACCACCTTATTATTAACTTACCCAAAAGTTTCTTTATGGCATGCATAGGAATAGGATCTGACAGGGG AAAAATAAGTAAACAACAATAAATGCAGAATCAGTGAAACCACGTCGGTAGCTAAATGCCGAAAATAAAGTCTCTCTATT TGCCCCCCCTTGTCCCTTCTCACATTGGCAGCACACACTTCAACAGTTCAACTCTAACTCCATTTCTTTCACCTCTCCTC TCTTATCCCATAGCGCAAATTATTATACTATCAAATTAAAATTAAAATTCTTTACTACACTAGTACACTACTTTTCTTTC TCTTTCACAAATCGTATAAAAATAAATGTCGCAGGTGAGTGCGGGCCAAGCTGTATTTATGCACCATTACTATATGGCTC ACTAGATCTTCGGAAGACACTCTACTCTCAACCCTCTAGATCTTGAAGGAAGCCACTGTCAATGGCTCACCCCTTCTACT TCTCCTGCTACACCAAGGTACTTGTGTTCTCTCTTCTTCTCTTCCTTTTTCTTTCTCTTTGCTCCACTTCCTACTCCAAA CCTCAACTTGTGAGCACTAGAACAAGTACTAGAGTTAGTAGTAGAAGAATATTAGAGGTTGAAGAAGAAGAGCAGCAGGA TGAGAAGCCCCTCAAGAAGAAAACCACCACAACCCAATCCACCAAAAACCAAACCAAGCTAATCAAACCCAATACTACTC CTTCTTCCAAAAACCAAACCAAAATCACCAAATCTAGTAACCTCTCCACCAAAAATCAAACCAAAACCATCAAATCCAAC AACACCATTTCCTTAAAAAACCAAACCAAATCCAATGCCACTTCCACCAAAACCATCAAATCCAACAACCTTTCACCCAA AAATCAAACCAAACAACTCAAGGTTAGCTCAAAGGAATCTCCCAAAACCACACCCACCGACACTGGACTCAAGAAGAAGC TCAATTCCACCACCTCCGCCTCTACCCCCAAGAGCAAGAAGCTGAACTCCACATCCAAAGCAACAACTCCTGTTTCCACT TCAAGCAAGAAATCACTGGATCTCGTGAAAGCAAGTAACAAAACTACAAAGGCCACCGCCACCGCCACCGCCACCGACAA GCAAACCAAATCCAAAACAACAACTCAACCTCACGACGCCACAAAACAACAGAGCAAGAAACCTGCAAAACAAGCACCAC CGGGTTGGTTCATTGATGAAGAAGAAGATGACGATATGGTTTCAATTTCAGAGTTCAGAGATCTTCCAAACAAGTTCCAA CGCACTTTAATCCCAGATTTGGAGCGAATCACCACCACCTCCAAAGCCTACCTAACAAAAGCCAACGACGAAATCACAAA AGGATTCAAACCCTACGTCGGCAACAAATATGCACCCACCGTCGCCGCCGTAGCCTCCTGCGCTTTCATCTTGATCCCTC TGCTCTTAGTCTCACTCCTCTGTACCAGAATCAAAGCCTTCTTCTCCCTCCAGAAGATCCTGATCTTCATCCAAGTGTAC CTCTCGATCTACTTCACCATTCTCTGCGTGTCTTCGTTGGTCACCGGAATCGAACCGTTGAAGTTTCTGTACTCCGTTTC GCATTCTACCTATCTCTGTCTCCAGGTGCTTCAGACACTGGCTTATGTGTTCTACCTGTTGCTGCTTCTCATGTTCCTCG TACTCGTATTCTCCACGGAGTGTGGGCTGGGCTTGAAGTTTCTGGGCCTGGCCCAGGTGTTTGTGGGCTTTGCTGTTGGG CTTCATTACTATGTGACGGTGTTTCATAGGGTGGTGCTGCGGCAACCACCTAAGACGAGTTGGAAGGTACACGGGATTTA TGCTACGTGTTTTCTCCTCATTTGTGTTCTTGCTGGGGCTGATAATAGAAGGAAAAAGGCTTATGTGGAAAATGATGGAG AAGAAGGCAAGAAGAACTAAATACAATTGTTACATGTATTTTTACGATTCTCATTTTCATTTTGATTCAATTTAGAACAT AAAGTTAATCATAATTATAGCAGCAAAATAATGCTGTTTTTGTAACTAGAGCACTTCAATGCCTAGTAGTTTGGCTGCAA AGTATCCTTTTTAACTTCAGAAAGGGAAGGATTCAACGAGCTTAAACACTTTTTTTATTGTAAAATATGTTAGCATCTCT TGTAATGAGAAGTGATAAATGTCATGAGGTCCATTAGCACGACTCTCCCTCTAATTATACATGTATTATGATTGTTGGTT TAGTGTAAATCTTCAATTATCGTAGGTATGTGAGAGTTGTTGGGAGTGATTTGCATCTGGAGTACTATCTATGAGGTTTC GGGTGTGTCACGGTATCTATGAGGTTTCGGGTGTGTCACGTTCAGCTGAACTGGCTTCGTGGTGCGTGGCGCACAGAATG GAGCGGAGAATTTGCCAGTTGTGACTAGAGTGTTTTTACACCATTAGGTCGGGGGCTGGCTTTCTAGGAATTGGGCGAGA TGCAAGACTTTTTCCTCAGAGTTAGAGCAGAAGTTCTTTACTCATATTAAAGAATAAGATCGCTCATCATACAGCTCACC AACTTTACTTGCCTCTATGAGAGACTCGCTCCGAGCAGGTACGGATTACAATACACGACTCTATGAAGGAAAGGGTTGGT GGGTTAGGAACGTTTTCAATATGATCATTTTTCCTTTTCACTTTCCTTCTT
CDS sequence (LotjaGi4g1v0398000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCACCCCTTCTACTTCTCCTGCTACACCAAGGTACTTGTGTTCTCTCTTCTTCTCTTCCTTTTTCTTTCTCTTTG CTCCACTTCCTACTCCAAACCTCAACTTGTGAGCACTAGAACAAGTACTAGAGTTAGTAGTAGAAGAATATTAGAGGTTG AAGAAGAAGAGCAGCAGGATGAGAAGCCCCTCAAGAAGAAAACCACCACAACCCAATCCACCAAAAACCAAACCAAGCTA ATCAAACCCAATACTACTCCTTCTTCCAAAAACCAAACCAAAATCACCAAATCTAGTAACCTCTCCACCAAAAATCAAAC CAAAACCATCAAATCCAACAACACCATTTCCTTAAAAAACCAAACCAAATCCAATGCCACTTCCACCAAAACCATCAAAT CCAACAACCTTTCACCCAAAAATCAAACCAAACAACTCAAGGTTAGCTCAAAGGAATCTCCCAAAACCACACCCACCGAC ACTGGACTCAAGAAGAAGCTCAATTCCACCACCTCCGCCTCTACCCCCAAGAGCAAGAAGCTGAACTCCACATCCAAAGC AACAACTCCTGTTTCCACTTCAAGCAAGAAATCACTGGATCTCGTGAAAGCAAGTAACAAAACTACAAAGGCCACCGCCA CCGCCACCGCCACCGACAAGCAAACCAAATCCAAAACAACAACTCAACCTCACGACGCCACAAAACAACAGAGCAAGAAA CCTGCAAAACAAGCACCACCGGGTTGGTTCATTGATGAAGAAGAAGATGACGATATGGTTTCAATTTCAGAGTTCAGAGA TCTTCCAAACAAGTTCCAACGCACTTTAATCCCAGATTTGGAGCGAATCACCACCACCTCCAAAGCCTACCTAACAAAAG CCAACGACGAAATCACAAAAGGATTCAAACCCTACGTCGGCAACAAATATGCACCCACCGTCGCCGCCGTAGCCTCCTGC GCTTTCATCTTGATCCCTCTGCTCTTAGTCTCACTCCTCTGTACCAGAATCAAAGCCTTCTTCTCCCTCCAGAAGATCCT GATCTTCATCCAAGTGTACCTCTCGATCTACTTCACCATTCTCTGCGTGTCTTCGTTGGTCACCGGAATCGAACCGTTGA AGTTTCTGTACTCCGTTTCGCATTCTACCTATCTCTGTCTCCAGGTGCTTCAGACACTGGCTTATGTGTTCTACCTGTTG CTGCTTCTCATGTTCCTCGTACTCGTATTCTCCACGGAGTGTGGGCTGGGCTTGAAGTTTCTGGGCCTGGCCCAGGTGTT TGTGGGCTTTGCTGTTGGGCTTCATTACTATGTGACGGTGTTTCATAGGGTGGTGCTGCGGCAACCACCTAAGACGAGTT GGAAGGTACACGGGATTTATGCTACGTGTTTTCTCCTCATTTGTGTTCTTGCTGGGGCTGATAATAGAAGGAAAAAGGCT TATGTGGAAAATGATGGAGAAGAAGGCAAGAAGAACTAA
Protein sequence (LotjaGi4g1v0398000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHPFYFSCYTKVLVFSLLLFLFLSLCSTSYSKPQLVSTRTSTRVSSRRILEVEEEEQQDEKPLKKKTTTTQSTKNQTKL IKPNTTPSSKNQTKITKSSNLSTKNQTKTIKSNNTISLKNQTKSNATSTKTIKSNNLSPKNQTKQLKVSSKESPKTTPTD TGLKKKLNSTTSASTPKSKKLNSTSKATTPVSTSSKKSLDLVKASNKTTKATATATATDKQTKSKTTTQPHDATKQQSKK PAKQAPPGWFIDEEEDDDMVSISEFRDLPNKFQRTLIPDLERITTTSKAYLTKANDEITKGFKPYVGNKYAPTVAAVASC AFILIPLLLVSLLCTRIKAFFSLQKILIFIQVYLSIYFTILCVSSLVTGIEPLKFLYSVSHSTYLCLQVLQTLAYVFYLL LLLMFLVLVFSTECGLGLKFLGLAQVFVGFAVGLHYYVTVFHRVVLRQPPKTSWKVHGIYATCFLLICVLAGADNRRKKA YVENDGEEGKKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 10 | 128 | 119 | 5.2E-199 | – | |
| PANTHER | 10 | 128 | 119 | 5.2E-199 | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 309 | 277 | - | – | |
| MobiDBLite | 53 | 250 | 198 | - | – | |
| MobiDBLite | 53 | 68 | 16 | - | – | |
| MobiDBLite | 69 | 241 | 173 | - | – | |
| PANTHER | 125 | 492 | 368 | 5.2E-199 | – | |
| PANTHER | 125 | 492 | 368 | 5.2E-199 | – | |
| Phobius | 310 | 334 | 25 | - | – | |
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 335 | 345 | 11 | - | – | |
| Phobius | 346 | 370 | 25 | - | – | |
| TMHMM | 346 | 368 | 23 | - | – | |
| Phobius | 371 | 389 | 19 | - | – | |
| TMHMM | 388 | 410 | 23 | - | – | |
| Phobius | 390 | 410 | 21 | - | – | |
| Phobius | 411 | 416 | 6 | - | – | |
| Phobius | 417 | 437 | 21 | - | – | |
| TMHMM | 417 | 439 | 23 | - | – | |
| Phobius | 438 | 456 | 19 | - | – | |
| TMHMM | 454 | 473 | 20 | - | – | |
| Phobius | 457 | 473 | 17 | - | – | |
| Phobius | 474 | 492 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0398000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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