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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0398100 |
| Transcript ID | LotjaGi4g1v0398100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 1; TAIR: AT5G10200.1 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; Swiss-Prot: sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1; TrEMBL-Plants: tr|I1K4J7|I1K4J7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0398100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77567564..77574303) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTAGATTTCCTCGCAGACATAAAAATCAAAATCAAAATCAAATGAATAATGAATTATTACCGAAAATGAATTATT GAGTTTCAGACAGTTTACTGAAGCAGTAAAGTCAGTCTAGTAAACACTGTTTCCACTCTCCATTATGCCGTTGTCTTCCC CCACTACCTTTTGTCTCCTTCTCTCCCTTTCTCTCTCCCTGTCTGAGATTTTAACCTAGATCAAACGGAACAACGATCCA TGTTGTGAGAAAAGCGTGAGCCACAGAGACAAAAAAATCGACCAAACATCTCAGGCACAGTTCGAATCAGATAAGGAATG GTCTAAGGTTGTTATCAGTGATAGCGAACTTGGATCTGCCATCTACATTCATCACCGATCGACACCGCTGCTGAAGAACA ACACTCGTGAACTTCACCAACACACTTCAACTCTCACTCGTCACTCTCGTGTGTTCTGCTTTTTCGGCGATTCAACACCT TTGAGCAATGGGGGTAATCTAACACACTCCCTCTTTCTTTCTTTTTTTCTTATAATCGATTTTGGCCACCGGAGAAGCTG GTTGTATGTTGCTTACTGTAGAATCGATTTTGCAAGACACTGGAAGGCAAAAAAAATTGATATCTCTGATTGTGTGAATT GACGTGGAAATTGTCCGTACTAACTGGTTTTGTAGCTAGTAGCCTAGCATTTTTCTTGTATCTTCCTATGTGATTCCCTC TTTGTTTGACTTTTTAATTTTTATTGTGAGAATATTCGTGCGGTTTTCTGTTTCAGCAACTAGTACTGTTTTTTTACCCT AACTATTTAAGCTGGAAAATTAAACATACAAATTTACTTGTAATTTATATGTTATGTAGCTATCTCTTGATGTAATTTGG ACTCGTTTTGAAGATTTCCCAGCAAGTTGGGCAGTTTTATAATATTTAAATCATTGTAAAAAGAATGTCTTGTGCTTCTT TTTTTTCCCACTGATAATCTAATGTTATTTAGGGAACTAAGGAAGAGTCATTGTCAATTTTTTTGGTATTTTATGACATG GATAAAAGTTAGATTTTGGGTTGGTATCTATCTGATGTTCTGCCAAATACTGATTGCAGGTTTGAAGTGGTTTCCTTGCT TTAGCTAGCTATCTGAGGAGAAATTGACTTGTTGATCTATGAGATTATAATTCTCATTTACAAAGCATGGATAAAGTTTC GTCAGATTGCCCATACCCGGGATGCTTCTTTTGTGTTATGAAGGAGGGGAATCCGAGCAAGCGTAGAGCGAGTGTACTCA AATTCTTTAGAGAACTTCCATGTCAGGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGAACACGGCAATGGCG CATCCAAATGACCCTGAATTCATAGAGCTAGGAATATTTGAATGCATGTCTGCCCTAATATGGAAAGGACTGAAAAATCG TCGCTGGCTTTCGCATGACCAAAATATCTACATCCCTTATTATGCAGCTCATATCATTGGTTCCTACACAATGAATATGG AAGAATTTGCAGAGAGTTCTGTTCATGCTGGGGTTATTCCTCCTCTGGTTGAGCTGTTAAGAGGTAGATTAACCTGGGTG GAGCAGAGGGTTGCAGTTAGAGCTTTGGGACATTTAGCTACATATCCCAGCACTTTTCCTTCTGTAGCAAGTCATGGTGA AATTCTTGAACTCTCCATGCAATTAGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCAATATGTTGATAGAA GGTTAAGTTATCACTGTGATCTGCTTACACGCGGTATGGGTGGTGTTGAAATGGAGTCCAGGAAGGCTGAGGAATGGGCT AGTCAGTTACAATGTTGGTCCCTTCAGCTCATCAATTGCTTTGCTTTTAAACCTGAATTTCTTCCTACGATATGCAAACC TGAATTTCTGAACAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCAGCTGGCATTGGTTTATTAAGAA CAATTTGTCATCAAAAGCTTGGAAGGGGACCAGTGGCCAGTTGCCCTGGTATTATTGAAGCATTATGTAATATTGCTCGG TCTACAGATGATTGGCAGTATATGGCTATTGATTGTCTTCTATGTTTGCTTCAAGATCCCAACATATGTCACAAGGTAAA ACTTTCACAGCTTTGCATTAGCACCTGGTTCTGTTATTTCGCTTAGCCTCATCCATTGAGCTCACTTGCACTGATGAAAA CTTATAAAGCTACTGATTGTCTGGGAAAGAATACTCGGAGTAGCATGTTAATGAAATTTATTTCCAATGCATTAAAAATT TAAAGTTAACTTAATTGGATTAAATTAAAAATGAAATAGAAAGGTTTTTATGCTTAATCTGAAGGACTTTGATTAGGCAT GGACCTTCACTTTGAGATCTATCACACTCCCTGCGACTTGTTTCTACCTCTTTATTTCCTGATTCCTAAAATTTCAACTG TAAATTTCATTGAGAGGTGAGGTATGAGGGGGGAAATACACTGATGGATGATTTCCAAACACTAGAATGGTAGTGCTAAG GAGAAGGAAATAAATAAAGATTTTGGCAAAGTATTTTGTTTTGTATGGCATTTTCAATTGGGCATCCAAATACATTGCTG TAGGGAAATAATCAGCTTATGGTTTTGTCTAGGCTGCTTAATCCTAGTTATCTATTCCCTTCGTCATTGTCTTCAATGGA AGGTGCCTAACCCCTGTGAAGACACTGATGAAATTTTAAACATGATATAATAGTACTTTTATCCACAGGATTATTTATTT TCATTTTTCCTCATAGGCCCAATGATTTCATTTTTACAAACACCAATTGCTAGGGATTACGACTCAAGTTTACATCAATT GGATATTGCAAATTGATTTGTGTTTGATTTAAGGACTTGGCATATATTATGTAGGTGGTTGATAAAGTTGTGCCTGCATT AATTGATCTTGCTGAGATTACTACTCTGGGTGATCATAAAAAGCTTGGCGATTCCATTGTTAATGTTCTTCAAGATTGCA TCCAGTCGCAAGGGTCAGGAAGAAGCTCAATCAATAGTCGCACTAAAGAACAGGTGGAGGATATATTAAATTCAAAGCAG AGATTAAAATGGGAAAAGAATATGCCCAAGGAAGATCTGCACATTAAGCAGGCTGCTGCACTGGTAGTCAAGCTTGAAGG AAATTCCCTGTTCTCATCTGGAAATATTGCTGGGGCTGCATCAAAGTACTCTGAAGCATTGGCATTGTGTCCAATGAGAT CCAGGAAGGAGAGAGTTGTTCTATATAGTAATCGTGCTCAATGCCATCTTTTGCTGCAACAACCTTTGGCTGCTATAAGT GATGCTACTCGTGCACTGTGCCTACATAAACCTGTCAATCGTCATGCCAAAAGCCTCTGGAGACGAGCACAGGCTTATGA CATGCTTGGGTTAGCGAAAGAGAGTTTATTAGATGCTATTCTATTTATAAATGAGTGCTCGCAATCAAATGATCCTGATC TCTCACTGAGGCAAAATAAAGTTCCGGATTATGCTGAGCGATTAGTTAAGAAACAGATGCGTGCTGCATGGTTATTTCGA GATGCAGCTATCAAGCATGGTGGTGTCCATAATCAGGGGGATGGTGGTGATATATATGGCCCAGAGACTGATGATTCTGA ATGGGAGACAGCTAGTGAAAGTGATATAGGTAATGATGGAAGAGATGATATGGGTGATGATGATGATGATGGTGATTGGA ATAATGATGATGAGAGGAAAGATTATGACAAACCTTCAATAAAAGGTATTTTTGTCAAATAGTTTCCTATTGAGATGCTT TTATCAACAATCTCCATTATTTTGTGGTCCCTCTTCATGTTTGTAATTATTCATTTTTGTTTGGTGTGTGGGGATTGGTT GGCTAATATGCTGAAGCATTTGCATATTTGAAATAAAAAGGAAAGGCAATGAAATATTTGGAAAGTAAGATACAAGGTCT CATCACTATTTGATGTTCTGTGTGCAAAATTATAGAATAACATGAATCTTACTAACCAGTCATTTTCTTTGTTTTTGAAA TGACAGTTTTATTTTACCAACTTAAATGATTCATATCAACTTATGATATAGATATCCAAATTCTCTGTAGATGATCTTGT CCCAACCTAACGGAACACTGAAAACTGATTTTCTATCAGGTTATACAGCAATGGTGAACAATTCTTATCATTTCAGTTTG CTAAGATTAGATATATATAATATATTTGGTCAAGAATTCAAGACTTATGTCCAGTCGGTGCATACCTTGATCTGTATCTC TCTGGCTTTAGTTTACATTTCTTAGAATGAATAGGTCACATTACGCTGGATTTCTAGTTTTAATTATGATAGTGGACAAA TTGATGTAATTAAGTCCTTAAATGAATTGCTTACTGCACTCCACTTTCAGCTAGCCCTTTATGACATTAGACCATCTGAT TTGAACTTATGCAAATCCAGTGAATTTGAGAGAAAATGTTGTACCCAAATTCTCTCCAATATATATCAACGAAAAAGAAG GAATAGAAGTAAAAATATGCATGTATTATATCCCTTAAGATGCAAACTGCAGTATTATATCCTTTATTTGGTACATGGTT TAATGCTTCGGTTTTGAAACTTTAATTTCCTCCAGAATTGAAGCATGGATACAATGTGCAGCTTGCGGAAGAAGAACCAT GAGATAAGCAGCTTTTGGCTTCTGTTACTGTTCCAACTATGCATAATTTGAGGGTTTAGAAGGAAAAATGCTAAGTCGCT CCAGTGTAAGTGGAGGGTTGAAAATGATGACAGTTTCTGGTTATTTGAGGTTCAGAATTAATTTATATAAAGTTTTCCAT ATTTCATGTTTGTTTTGTTCTCCCATTTTTCTTGTCAAGTGGAAAAAATGAAGTTTTCAAGTTTGGAGAACTACATAGCA TTTGGAGTTTGTGAAGCATTTTTTTTGTTCCCCCGCCCCCCCCCCCCCCCCCCCCTCCCTCTTGGAGGTTTGTGTATATA AACCTTTTGTGAGCAAGATTCCTGAGTGCGTTATTTTTCCTTATTATTCTGATTGTAGTTTGCCTGTTCTTTTTTTTTGT ATTCATTATTTTTCATTTCTTTAGAATCGATTTTACTTGTTTAAAATCAATTCTAACCAGTTCAACTGTACCGGTAAAAT TGATTTCATGGTTGAAATATTAGATCCACTAACACAACAAATAGTTGCTTCTGCGTTGAACATAATTACTTCTGAGATTT TAGGACTACAAAAATCACTTTTTTCATAAAGATATCTAGAACACGAATCACATTATTTTAACTAGTGGTTATCATTCATA ATTTTAGTAGAATTAATTATGTCTAGAGTAATTCGCTAATGCTAATCCAAACACAAAGTGTAAATGCGTATGATTACTGC TACTAACAAGTTTTTGTTTATTCAATCAGAACATAAAAGTGATTTACATTGAGCGTTGAAAAATATTCTAATTTTCTCCA ATCCTATCAAAAATAGCTTACAAACTTAACTAATGTCACAAATCTCCCTAGAGCAGAATTTTCTTTCTATGTGCATGCAT AATTGGAAGCACAAACTTCACTCTTAACTCCATTTGTTGCAGTTCTGTTCTCTTATCCCATAAACAAATGCAAATCATTA CAAAGTATAAACTCCTTTAGTACACTTTCCCCCTCACTCCCCCTCCTTTTGTTTCTCTTCCACAAACCAAATAAAAATAA ATCTCAGTCGTGGAACATATTTTGAGACATCAAGGATGATTGAATATGAAAATCTGTTCACATTTAAAGAATGAATGATT TTTCCCTAGTCGTGTAACAGATGAACTCTACTCTTACTGGTGTAATTGTGTTACCGGAAGAAAAAAGCTATAACAATTTC CAAGCCTTCTAAAACTTGATCAAATGAGCAAGTTGATAAACCTCCACTTTTTTCCATAAATGAACTGCTGAAAAAAGTGA ACTACGGGGGCAGCAAAACTTTCTCATCATCATCATCATCTAAGTCTATGCTCTTCTCCCTTGGATAATCAATGTCAATC TCGCTACTTTCCTTACCATTCAGCCCATTTGACTGGAAAACAGGAATTTCACAATATTCTTCTTTTGTGTCATCTTCCAC CTCCATCTGCTGCATTTCTGAATCCACTAGTGCAACCATTTTTGCTCTCTCCCTGTCCCTTGGGTATGTGCAGTAAAGGA TTGAGTAGATGGAGACACATAGTATCATGGGGATTATAAATGCACTATAAAGTGCCTTGGCAAGTGATGCAGCATTTTCC CTATCTGTTTCAATCTCAACAGAATTTGAGGATCCTTTTGGGATTGGTCTAAAACCATACACATGCTGAGCCAAAAGTCC CACAATAGGAGGAGCAAAGGACCCCAAGATAGACTCGAAAGATTGATCCAAAGCATATATTGCAGTTCGGGACTTCACTG GGACTATTTCTGCAAATATTGGACTGTCTACACTGTTAAAGTTCAAAGAAAACTAAACAAAGTGAACCAAAGAAAACTAA AAACAATATCATATGATCAAGTGATCAATTTAGCCGACCTCACTTAGTGGGATAAGGCTTTAGTTGCTGTCATATTGCTA AAGCTTAATAAGGCCCCGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTATG ACATAAGCGCTTATTCATAA
CDS sequence (LotjaGi4g1v0398100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAAGTTTCGTCAGATTGCCCATACCCGGGATGCTTCTTTTGTGTTATGAAGGAGGGGAATCCGAGCAAGCGTAG AGCGAGTGTACTCAAATTCTTTAGAGAACTTCCATGTCAGGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGA ACACGGCAATGGCGCATCCAAATGACCCTGAATTCATAGAGCTAGGAATATTTGAATGCATGTCTGCCCTAATATGGAAA GGACTGAAAAATCGTCGCTGGCTTTCGCATGACCAAAATATCTACATCCCTTATTATGCAGCTCATATCATTGGTTCCTA CACAATGAATATGGAAGAATTTGCAGAGAGTTCTGTTCATGCTGGGGTTATTCCTCCTCTGGTTGAGCTGTTAAGAGGTA GATTAACCTGGGTGGAGCAGAGGGTTGCAGTTAGAGCTTTGGGACATTTAGCTACATATCCCAGCACTTTTCCTTCTGTA GCAAGTCATGGTGAAATTCTTGAACTCTCCATGCAATTAGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCA ATATGTTGATAGAAGGTTAAGTTATCACTGTGATCTGCTTACACGCGGTATGGGTGGTGTTGAAATGGAGTCCAGGAAGG CTGAGGAATGGGCTAGTCAGTTACAATGTTGGTCCCTTCAGCTCATCAATTGCTTTGCTTTTAAACCTGAATTTCTTCCT ACGATATGCAAACCTGAATTTCTGAACAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCAGCTGGCAT TGGTTTATTAAGAACAATTTGTCATCAAAAGCTTGGAAGGGGACCAGTGGCCAGTTGCCCTGGTATTATTGAAGCATTAT GTAATATTGCTCGGTCTACAGATGATTGGCAGTATATGGCTATTGATTGTCTTCTATGTTTGCTTCAAGATCCCAACATA TGTCACAAGGTGGTTGATAAAGTTGTGCCTGCATTAATTGATCTTGCTGAGATTACTACTCTGGGTGATCATAAAAAGCT TGGCGATTCCATTGTTAATGTTCTTCAAGATTGCATCCAGTCGCAAGGGTCAGGAAGAAGCTCAATCAATAGTCGCACTA AAGAACAGGTGGAGGATATATTAAATTCAAAGCAGAGATTAAAATGGGAAAAGAATATGCCCAAGGAAGATCTGCACATT AAGCAGGCTGCTGCACTGGTAGTCAAGCTTGAAGGAAATTCCCTGTTCTCATCTGGAAATATTGCTGGGGCTGCATCAAA GTACTCTGAAGCATTGGCATTGTGTCCAATGAGATCCAGGAAGGAGAGAGTTGTTCTATATAGTAATCGTGCTCAATGCC ATCTTTTGCTGCAACAACCTTTGGCTGCTATAAGTGATGCTACTCGTGCACTGTGCCTACATAAACCTGTCAATCGTCAT GCCAAAAGCCTCTGGAGACGAGCACAGGCTTATGACATGCTTGGGTTAGCGAAAGAGAGTTTATTAGATGCTATTCTATT TATAAATGAGTGCTCGCAATCAAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCGGATTATGCTGAGCGATTAG TTAAGAAACAGATGCGTGCTGCATGGTTATTTCGAGATGCAGCTATCAAGCATGGTGGTGTCCATAATCAGGGGGATGGT GGTGATATATATGGCCCAGAGACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGTAATGATGGAAGAGA TGATATGGGTGATGATGATGATGATGGTGATTGGAATAATGATGATGAGAGGAAAGATTATGACAAACCTTCAATAAAAG AATTGAAGCATGGATACAATGTGCAGCTTGCGGAAGAAGAACCATGA
Protein sequence (LotjaGi4g1v0398100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKVSSDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPCQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMSALIWK GLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESSVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPSV ASHGEILELSMQLAMSSLEIVYSHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLP TICKPEFLNKLPGMWGGLVNENSPAGIGLLRTICHQKLGRGPVASCPGIIEALCNIARSTDDWQYMAIDCLLCLLQDPNI CHKVVDKVVPALIDLAEITTLGDHKKLGDSIVNVLQDCIQSQGSGRSSINSRTKEQVEDILNSKQRLKWEKNMPKEDLHI KQAAALVVKLEGNSLFSSGNIAGAASKYSEALALCPMRSRKERVVLYSNRAQCHLLLQQPLAAISDATRALCLHKPVNRH AKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFRDAAIKHGGVHNQGDG GDIYGPETDDSEWETASESDIGNDGRDDMGDDDDDGDWNNDDERKDYDKPSIKELKHGYNVQLAEEEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 620 | 620 | 0.0 | – | |
| PANTHER | 1 | 620 | 620 | 0.0 | – | |
| SUPERFAMILY | 66 | 342 | 277 | 8.47E-16 | ||
| SUPERFAMILY | 399 | 503 | 105 | 1.94E-15 | ||
| Gene3D | 400 | 524 | 125 | 3.0E-23 | ||
| MobiDBLite | 555 | 628 | 74 | - | – | |
| MobiDBLite | 585 | 601 | 17 | - | – | |
| MobiDBLite | 602 | 628 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0398100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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