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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0398100 |
| Transcript ID | LotjaGi4g1v0398100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 1; TAIR: AT5G10200.1 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein; Swiss-Prot: sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1; TrEMBL-Plants: tr|I1K4J7|I1K4J7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0398100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77568750..77571576) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAAAGTTTCGTCAGATTGCCCATACCCGGGATGCTTCTTTTGTGTTATGAAGGAGGGGAATCCGAGCAAGCGTAG AGCGAGTGTACTCAAATTCTTTAGAGAACTTCCATGTCAGGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGA ACACGGCAATGGCGCATCCAAATGACCCTGAATTCATAGAGCTAGGAATATTTGAATGCATGTCTGCCCTAATATGGAAA GGACTGAAAAATCGTCGCTGGCTTTCGCATGACCAAAATATCTACATCCCTTATTATGCAGCTCATATCATTGGTTCCTA CACAATGAATATGGAAGAATTTGCAGAGAGTTCTGTTCATGCTGGGGTTATTCCTCCTCTGGTTGAGCTGTTAAGAGGTA GATTAACCTGGGTGGAGCAGAGGGTTGCAGTTAGAGCTTTGGGACATTTAGCTACATATCCCAGCACTTTTCCTTCTGTA GCAAGTCATGGTGAAATTCTTGAACTCTCCATGCAATTAGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCA ATATGTTGATAGAAGGTTAAGTTATCACTGTGATCTGCTTACACGCGGTATGGGTGGTGTTGAAATGGAGTCCAGGAAGG CTGAGGAATGGGCTAGTCAGTTACAATGTTGGTCCCTTCAGCTCATCAATTGCTTTGCTTTTAAACCTGAATTTCTTCCT ACGATATGCAAACCTGAATTTCTGAACAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCAGCTGGCAT TGGTTTATTAAGAACAATTTGTCATCAAAAGCTTGGAAGGGGACCAGTGGCCAGTTGCCCTGGTATTATTGAAGCATTAT GTAATATTGCTCGGTCTACAGATGATTGGCAGTATATGGCTATTGATTGTCTTCTATGTTTGCTTCAAGATCCCAACATA TGTCACAAGGTAAAACTTTCACAGCTTTGCATTAGCACCTGGTTCTGTTATTTCGCTTAGCCTCATCCATTGAGCTCACT TGCACTGATGAAAACTTATAAAGCTACTGATTGTCTGGGAAAGAATACTCGGAGTAGCATGTTAATGAAATTTATTTCCA ATGCATTAAAAATTTAAAGTTAACTTAATTGGATTAAATTAAAAATGAAATAGAAAGGTTTTTATGCTTAATCTGAAGGA CTTTGATTAGGCATGGACCTTCACTTTGAGATCTATCACACTCCCTGCGACTTGTTTCTACCTCTTTATTTCCTGATTCC TAAAATTTCAACTGTAAATTTCATTGAGAGGTGAGGTATGAGGGGGGAAATACACTGATGGATGATTTCCAAACACTAGA ATGGTAGTGCTAAGGAGAAGGAAATAAATAAAGATTTTGGCAAAGTATTTTGTTTTGTATGGCATTTTCAATTGGGCATC CAAATACATTGCTGTAGGGAAATAATCAGCTTATGGTTTTGTCTAGGCTGCTTAATCCTAGTTATCTATTCCCTTCGTCA TTGTCTTCAATGGAAGGTGCCTAACCCCTGTGAAGACACTGATGAAATTTTAAACATGATATAATAGTACTTTTATCCAC AGGATTATTTATTTTCATTTTTCCTCATAGGCCCAATGATTTCATTTTTACAAACACCAATTGCTAGGGATTACGACTCA AGTTTACATCAATTGGATATTGCAAATTGATTTGTGTTTGATTTAAGGACTTGGCATATATTATGTAGGTGGTTGATAAA GTTGTGCCTGCATTAATTGATCTTGCTGAGATTACTACTCTGGGTGATCATAAAAAGCTTGGCGATTCCATTGTTAATGT TCTTCAAGATTGCATCCAGTCGCAAGGGTCAGGAAGAAGCTCAATCAATAGTCGCACTAAAGAACAGGTGGAGGATATAT TAAATTCAAAGCAGAGATTAAAATGGGAAAAGAATATGCCCAAGGAAGATCTGCACATTAAGCAGGCTGCTGCACTGGTA GTCAAGCTTGAAGGAAATTCCCTGTTCTCATCTGGAAATATTGCTGGGGCTGCATCAAAGTACTCTGAAGCATTGGCATT GTGTCCAATGAGATCCAGGAAGGAGAGAGTTGTTCTATATAGTAATCGTGCTCAATGCCATCTTTTGCTGCAACAACCTT TGGCTGCTATAAGTGATGCTACTCGTGCACTGTGCCTACATAAACCTGTCAATCGTCATGCCAAAAGCCTCTGGAGACGA GCACAGGCTTATGACATGCTTGGGTTAGCGAAAGAGAGTTTATTAGATGCTATTCTATTTATAAATGAGTGCTCGCAATC AAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCGGATTATGCTGAGCGATTAGTTAAGAAACAGATGCGTGCTG CATGGTTATTTCGAGATGCAGCTATCAAGCATGGTGGTGTCCATAATCAGGGGGATGGTGGTGATATATATGGCCCAGAG ACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGTAATGATGGAAGAGATGATATGGGTGATGATGATGA TGATGGTGATTGGAATAATGATGATGAGAGGAAAGATTATGACAAACCTTCAATAAAAGGTATTTTTGTCAAATAGTTTC CTATTGAGATGCTTTTATCAACAATCTCCATTATTTTGTGGTCCCTCTTCATGTTTGTAATTATTCATTTTTGTTTGGTG TGTGGGGATTGGTTGGCTAATATGCTGAAGCATTTGCATATTTGAAATAAAAAGGAAAGGCAATGAAATATTTGGAAAGT AAGATACAAGGTCTCATCACTATTTGA
CDS sequence (LotjaGi4g1v0398100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAAGTTTCGTCAGATTGCCCATACCCGGGATGCTTCTTTTGTGTTATGAAGGAGGGGAATCCGAGCAAGCGTAG AGCGAGTGTACTCAAATTCTTTAGAGAACTTCCATGTCAGGATGATGATGGTCAGGTTCTCCCTATCAGTGGCCTTTGGA ACACGGCAATGGCGCATCCAAATGACCCTGAATTCATAGAGCTAGGAATATTTGAATGCATGTCTGCCCTAATATGGAAA GGACTGAAAAATCGTCGCTGGCTTTCGCATGACCAAAATATCTACATCCCTTATTATGCAGCTCATATCATTGGTTCCTA CACAATGAATATGGAAGAATTTGCAGAGAGTTCTGTTCATGCTGGGGTTATTCCTCCTCTGGTTGAGCTGTTAAGAGGTA GATTAACCTGGGTGGAGCAGAGGGTTGCAGTTAGAGCTTTGGGACATTTAGCTACATATCCCAGCACTTTTCCTTCTGTA GCAAGTCATGGTGAAATTCTTGAACTCTCCATGCAATTAGCAATGAGTTCCCTGGAAATAGTTTATTCACACTTTTACCA ATATGTTGATAGAAGGTTAAGTTATCACTGTGATCTGCTTACACGCGGTATGGGTGGTGTTGAAATGGAGTCCAGGAAGG CTGAGGAATGGGCTAGTCAGTTACAATGTTGGTCCCTTCAGCTCATCAATTGCTTTGCTTTTAAACCTGAATTTCTTCCT ACGATATGCAAACCTGAATTTCTGAACAAACTACCTGGCATGTGGGGTGGACTTGTTAATGAAAATTCACCAGCTGGCAT TGGTTTATTAAGAACAATTTGTCATCAAAAGCTTGGAAGGGGACCAGTGGCCAGTTGCCCTGGTATTATTGAAGCATTAT GTAATATTGCTCGGTCTACAGATGATTGGCAGTATATGGCTATTGATTGTCTTCTATGTTTGCTTCAAGATCCCAACATA TGTCACAAGGTGGTTGATAAAGTTGTGCCTGCATTAATTGATCTTGCTGAGATTACTACTCTGGGTGATCATAAAAAGCT TGGCGATTCCATTGTTAATGTTCTTCAAGATTGCATCCAGTCGCAAGGGTCAGGAAGAAGCTCAATCAATAGTCGCACTA AAGAACAGGTGGAGGATATATTAAATTCAAAGCAGAGATTAAAATGGGAAAAGAATATGCCCAAGGAAGATCTGCACATT AAGCAGGCTGCTGCACTGGTAGTCAAGCTTGAAGGAAATTCCCTGTTCTCATCTGGAAATATTGCTGGGGCTGCATCAAA GTACTCTGAAGCATTGGCATTGTGTCCAATGAGATCCAGGAAGGAGAGAGTTGTTCTATATAGTAATCGTGCTCAATGCC ATCTTTTGCTGCAACAACCTTTGGCTGCTATAAGTGATGCTACTCGTGCACTGTGCCTACATAAACCTGTCAATCGTCAT GCCAAAAGCCTCTGGAGACGAGCACAGGCTTATGACATGCTTGGGTTAGCGAAAGAGAGTTTATTAGATGCTATTCTATT TATAAATGAGTGCTCGCAATCAAATGATCCTGATCTCTCACTGAGGCAAAATAAAGTTCCGGATTATGCTGAGCGATTAG TTAAGAAACAGATGCGTGCTGCATGGTTATTTCGAGATGCAGCTATCAAGCATGGTGGTGTCCATAATCAGGGGGATGGT GGTGATATATATGGCCCAGAGACTGATGATTCTGAATGGGAGACAGCTAGTGAAAGTGATATAGGTAATGATGGAAGAGA TGATATGGGTGATGATGATGATGATGGTGATTGGAATAATGATGATGAGAGGAAAGATTATGACAAACCTTCAATAAAAG GTATTTTTGTCAAATAG
Protein sequence (LotjaGi4g1v0398100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKVSSDCPYPGCFFCVMKEGNPSKRRASVLKFFRELPCQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMSALIWK GLKNRRWLSHDQNIYIPYYAAHIIGSYTMNMEEFAESSVHAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPSV ASHGEILELSMQLAMSSLEIVYSHFYQYVDRRLSYHCDLLTRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLP TICKPEFLNKLPGMWGGLVNENSPAGIGLLRTICHQKLGRGPVASCPGIIEALCNIARSTDDWQYMAIDCLLCLLQDPNI CHKVVDKVVPALIDLAEITTLGDHKKLGDSIVNVLQDCIQSQGSGRSSINSRTKEQVEDILNSKQRLKWEKNMPKEDLHI KQAAALVVKLEGNSLFSSGNIAGAASKYSEALALCPMRSRKERVVLYSNRAQCHLLLQQPLAAISDATRALCLHKPVNRH AKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFRDAAIKHGGVHNQGDG GDIYGPETDDSEWETASESDIGNDGRDDMGDDDDDGDWNNDDERKDYDKPSIKGIFVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 615 | 615 | 0.0 | – | |
| PANTHER | 1 | 615 | 615 | 0.0 | – | |
| SUPERFAMILY | 65 | 342 | 278 | 6.08E-16 | ||
| SUPERFAMILY | 399 | 503 | 105 | 1.99E-15 | ||
| Gene3D | 400 | 524 | 125 | 2.9E-23 | ||
| MobiDBLite | 555 | 618 | 64 | - | – | |
| MobiDBLite | 585 | 601 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0398100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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