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LotjaGi4g1v0401200.1

Overview

Field Value
Gene ID LotjaGi4g1v0401200
Transcript ID LotjaGi4g1v0401200.1
Lotus japonicus genome version Gifu v1.2
Description Regulation of nuclear pre-mRNA domain-containing protein 1B; TAIR: AT5G65180.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B; TrEMBL-Plants: tr|A0A151RRS1|A0A151RRS1_CAJCA Regulation of nuclear pre-mRNA domain-containing protein 1B; Found in the gene: LotjaGi4g1v0401200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:77870269..77875028) extracted from Lotus japonicus Gifu genome v1.2.

GTGTGAGTGTGACTAGATTAGATGATTCATCCTGATCCTCATGAGACAATGTTGCTGACTTTGCGCCAAATTCCGGAAAC GTAAACTTTCCAAGGACTCTTTTTCAAAGTCTTTAACTCACTTTCCCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT CACTCTCTCAATTCCCTCTCAGATTTTCCCCAAAACGCTGTCGTTCTCAACAACACCCTTTCCTTTCTGCATTTCCATGA ATTCTCCTTCTTCCTTCACTTTCAGCTCGATTTGAATCTCTTCGCTTCTGCTTCACCACCACCTTCAGGTACTTCTTTTT TTTTCTAGGGTTTTAGTTTCACTGAATTCCCAATTTCATTCTCACTCACGTTTTCTTTTTGATCAATCAGCTCAATTGGG GTGCTAGGGTTTCGCCCTAGTGCCCGACCAGGGACTTGACTATGAGTGTCACTAGCACCTTCAATGAGCAGATTCTTGCG GACAAGATGTCCAAGATCAACAGCACCCAGCAATGCGTTGAGAGTATCCTTTTTAATTTAATTGAATCTGCTTTTCAATT CTCTGCATGGCTTAACTGAATTGGGATGTGGGTTTTAGGGATTCTCAAGTGTTTGATTGCATGTGTGCATTGATGTTGTT ATTCATTGAATCTGAATTACTATCTGTCTGTGTGGAAATTGTTTCGAATTGGGTTGGTTGGTACTTGGCAGTGGAAGCCT TTAGAATGTGGTTTTTTTCTGCACGGCTTAACCTGATTAGAATGTCGGTTTTGGGGATATGGAAGCCTTTCCTTGCATGT ATGCATTGATGTTGTAATTGATTGAATCTGAATTACTGTCTATGTGGGAGGGAAGTGTTTTGAATTAGATTGGTATTTTG CAGTAGGGGGAATGCAATCTAATGAATGTGGTTTGGTTGTGTAGATTTGGGAATTGAATAAATGGCATTGCTTTTAATTG GACTACCATATTCGTGTTGTAATTTGGTTTTGCTGCTTATGTCTAGATTCGATTACATTTTATGGTGCCAGGAAATTGTG ACCTTGTCGGTCTTTTCGATTAGTGTTTGATTTCTGAATAGGGAATTAGTGAAGAACTATTAAAGCGGCAGCTTTTGATT GCTAGATTAGGTAATTTTTCTGTGAAATACACGTGTATTCTTGCCTACGTGTTTGAATGACTTGAACAGGCTCTTATGTT ATTGTTGTTTCTTGTTACTTCTCTTCTGGAGGACAAGTGAAGTAGGAAGATAGACAAATTCTTGTGGGGTTTGGAAGTGG AACTAGAATGGCTAGGCAACCATAGTAGGAAGCTTTTATTTCCAGAGCTACATATGGTACTAAACCGGAATGAAATGGGC TATCCTATTTTGAAGTCATGGCAGATAGTTATGGACTATGGAGTATTGTTTAAAATATGCATAGGAAATGTAGTAGTTAA TGACCACTTGTATTTCATTTTATGCAATGAGTCTAATCTTGTATAGTTGTTTCTTGCATTTTATATTAGTAAAACACGTG GTTTTGCTACTGCTTTGTGAAGTTCAAGTCAGTCCATCCTGCATTTGGATCTACAAATAATTAGATCTTATAACTTCTTA TTTGCATTTCTGGCATGTATTTGTTATGCATGATCCTTATTGGGACTTGCAGTGACTGCTTCTGTTAATCAGAACCTCAA CTTGAAAACGGTTTGTCTTAGACCATTTGCAGCTCTAGCTTTTGGTTAACTTATGTACCTTTATACTGCTATAAACAAGA CAATAGCTTAACCTAGTGAGATAAATTTTGTTGTCTTTTCAGTTTTAAGATAACTTGGTAGTGCTTGATCAATGTAATAT GGGATGCAAGTTTCTGAATTAGTCTTTTTGCATGAATTTTGCTACTGCATATTAAGTTGATTTCGTGAAGCACTTGTATT GTTTTTTTGATGCTCTATAATTTGTTATCTTAACTTTTGTATAGCTTTATCACATTGGTGTATATTCCACCAAAGCAAAG CAGAACTAGTTGTTGGAACATGGGATAAACAATTTCACAATTCAGAGAAGGGTAAGCGGGTCCCCCTTCTGTATCTTGCA AATGACATCTTGCAGAACAGCAAACGTAAAGGAAATGAATTTGTGACTGAGTTTTGGAAGGTTCTTCCTAATTCACTTAA AGATGTTCTTGACAAGGGTGAGGATCACGAAAAGCGTGTGGCATCTAGACTGGTAAGCCTCTTTTCCAGGGTTTCGAGTA AGTACAAGTGAATGCAGCCATTCCAATCAATCCTTAGAAAAGTGGGAAAAGGGGGATGTGGAAGATTTTGATATGAAGTT GCAGAATTCTTGGCTGAAACTTCAGATATGGCACATAAATGTTGAAAATGATTTGCATAGTCTGATATTGATTTCACTAT GGGCAATTTGATCTATTTAACTTATTTACATAACTTTAGGTGGATATATGGGAGGAAAGGAAAGTGTTTGGATCTATGGC ACAGAACCTTAAGAATGTAATTCTTGGAGTAGAAGCACCTCCACCGTTGGAGTTCAACAAAAAGCGATCCCGTACGGGAT CTGTACGAATTGTGAAAAAGGATTCTCGCTCCATTAGAACGGTAAGACTGAGGATCTTCATGGCTCCCCCTTCCCCAATT TTTTGCTGAAACATTTTTATGCTTTTAATATCCGTCAAACTAATTAGCATTTCTTCTTGCATGGATCACTGTTGTACATT TTATGGAATCCAGAAATTGACCATTGGAGGTCCGGCGGAAAAAATAGTCTCAGCCTTTCATGCAGTGCTTAGCGAACATC CCAATGAAGATGCAGAGATGAGTAAATGCAAGTCTTCTGTACACCGTGTGAGGAAGATGGAAAAAGATGTTGATATTGCA TGCAATATCGGTAAGCTATCAACATATCAGAGCTAACCCCTGATTTTTCGATGCTAGGATTCTTATATTGCTTTTCCATT TCCAGTAAAGGACCCTAAGCGAAAAACTTTGGCCAAGGAATTAGTGGAGGAAGAAAGTATTATGAAACGATGTATTGAAA ATCTTAAATTAGTTGAAGCAAGTAGAGCAGCACTTGTATCTCAGTTAAAAGAAGCTTTGCATGAACAGGCAAGTTTTTGT GTCCATGTGCTCAATATGGTTATTTGCATTCTAAACTTATTAGGTTTCTGATTGATATTTTGAGTTCCTGATGCCTTGTA ATCCTTTGTGGATACTTCTACCAGGAATCTGAATTGGAGAATGTTCGTACTCAGATTCAGGTATGAATTATCATAATTCT TTTCATGAGAAGAGTGTTCTATTTTGAGTAGTTTCTCATCATATGTGATGTGATATTTATTTATCATATGTCTAGGTATC TTATCATTTAATTACTTCTCTCTTATGTGTCTCTTCTACATATATCTGTTAGATGTAACTGAGCAATTATTATGAAGTCA ACAAAGAGATCATAATTAGTATGGGAAGCTGTAAAACATTTAATACAAATAAATTACACTGGCCTTTCTTGAAATTTATG TCACCTGCATGGACACACCTGCATCTTTGAAAAATACTAAATAAACTTATAAAGGCTATCTAATCGATTCTTGAGGGAGT ATGTATCTGGAATAAATTTAAACTGGGAGAATAGGGAAATTTAATTTTTGACCTAGATCATGTGTGTATAATTTTCATAA ACCAAAAGAAGTTGGTTTCAGTTGAAAATTACTCAGTGAAAGCATCATTACTCAAATATGAATGAACTAAGTTCCTGTTA AGCATTGGATACGGGGTATTTTTTGTCATTAATGATACTAGCAAGTTTGAACTTTATGGTGATATATCTCGTTAATGATA TGTAGGTAGCACAAGCACAAGCAGAAGAGTCTAGCTTCATGAGGAAACGACTTGAAAATGAAGAAATTTCATATAAACCA TCATCCTCAACAACTTCAGTTATTGATACAAATGCAAAATCAGAAGCAGCAACTAAGAAGTCGGCTTCAACAATTGCAGC AGAGGTTGCAGATAAACTAGCAGCTTCTTCATCATCTCAATTCATCATGACTTCTGTTCTCGAAACGTTTGCAGCTGAGG AGGCTAAAAATGCTGGTCTAGCTTCTGAGTCCATGTCAAAACCTGAGCAGCCAATACACCTGCCAGATCAATATGCTTTT TTGTCCGCACCGCAGTTGTTCGCCACACCAAATCATTCATACCCTTCAGCTTTGGTACACCCACCAACAATGCAGAATCC AGCCGCCGCACCACAAGGTCAATATATCATGATGGGTAATTCATCCTCCCAGCAGTTTTTGGAGTCATCAGGAGGGATTA TATCTCCTTATGGTTATGGTAGCATTCCACCATTACCGCCAGGACCACCCCTACCTATGGAGAATCCAATGATGCCTCTG ACAAACCAGACATTACAAATACCGCCGCAGCCGCAGCAGCAAGCTCATGTAACTCAACATCCACCAATAACAATGACACA GCAAGCTCCAGCAGCACCTAGTTTCCTACCAATTCAACCCCCAGGAAATGTATACTATGGTAATCATGTGCCATTCTAAA TGAGTCCTGCAATAGTTAGCTTTAAACTAAGTATTGATGAAGAGAGAGAGAGGGAGGGAGACAGAGAGATTTTGATAGAT TTTTCTTTATTTTTTATGGTAATGTACTTGTATAGCCAATTGCAATTAGATCATTATTGGGTCTTATTTATGCAGTCAAA GACTGATTTTGAAACCAATAATACATAAGGCTCTGTTTGG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0401200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGTCACTAGCACCTTCAATGAGCAGATTCTTGCGGACAAGATGTCCAAGATCAACAGCACCCAGCAATGCGTTGA GACTTTATCACATTGGTGTATATTCCACCAAAGCAAAGCAGAACTAGTTGTTGGAACATGGGATAAACAATTTCACAATT CAGAGAAGGGTAAGCGGGTCCCCCTTCTGTATCTTGCAAATGACATCTTGCAGAACAGCAAACGTAAAGGAAATGAATTT GTGACTGAGTTTTGGAAGGTTCTTCCTAATTCACTTAAAGATGTTCTTGACAAGGGTGAGGATCACGAAAAGCGTGTGGC ATCTAGACTGGTGGATATATGGGAGGAAAGGAAAGTGTTTGGATCTATGGCACAGAACCTTAAGAATGTAATTCTTGGAG TAGAAGCACCTCCACCGTTGGAGTTCAACAAAAAGCGATCCCGTACGGGATCTGTACGAATTGTGAAAAAGGATTCTCGC TCCATTAGAACGAAATTGACCATTGGAGGTCCGGCGGAAAAAATAGTCTCAGCCTTTCATGCAGTGCTTAGCGAACATCC CAATGAAGATGCAGAGATGAGTAAATGCAAGTCTTCTGTACACCGTGTGAGGAAGATGGAAAAAGATGTTGATATTGCAT GCAATATCGTAAAGGACCCTAAGCGAAAAACTTTGGCCAAGGAATTAGTGGAGGAAGAAAGTATTATGAAACGATGTATT GAAAATCTTAAATTAGTTGAAGCAAGTAGAGCAGCACTTGTATCTCAGTTAAAAGAAGCTTTGCATGAACAGGAATCTGA ATTGGAGAATGTTCGTACTCAGATTCAGGTAGCACAAGCACAAGCAGAAGAGTCTAGCTTCATGAGGAAACGACTTGAAA ATGAAGAAATTTCATATAAACCATCATCCTCAACAACTTCAGTTATTGATACAAATGCAAAATCAGAAGCAGCAACTAAG AAGTCGGCTTCAACAATTGCAGCAGAGGTTGCAGATAAACTAGCAGCTTCTTCATCATCTCAATTCATCATGACTTCTGT TCTCGAAACGTTTGCAGCTGAGGAGGCTAAAAATGCTGGTCTAGCTTCTGAGTCCATGTCAAAACCTGAGCAGCCAATAC ACCTGCCAGATCAATATGCTTTTTTGTCCGCACCGCAGTTGTTCGCCACACCAAATCATTCATACCCTTCAGCTTTGGTA CACCCACCAACAATGCAGAATCCAGCCGCCGCACCACAAGGTCAATATATCATGATGGGTAATTCATCCTCCCAGCAGTT TTTGGAGTCATCAGGAGGGATTATATCTCCTTATGGTTATGGTAGCATTCCACCATTACCGCCAGGACCACCCCTACCTA TGGAGAATCCAATGATGCCTCTGACAAACCAGACATTACAAATACCGCCGCAGCCGCAGCAGCAAGCTCATGTAACTCAA CATCCACCAATAACAATGACACAGCAAGCTCCAGCAGCACCTAGTTTCCTACCAATTCAACCCCCAGGAAATGTATACTA TGGTAATCATGTGCCATTCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0401200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSVTSTFNEQILADKMSKINSTQQCVETLSHWCIFHQSKAELVVGTWDKQFHNSEKGKRVPLLYLANDILQNSKRKGNEF VTEFWKVLPNSLKDVLDKGEDHEKRVASRLVDIWEERKVFGSMAQNLKNVILGVEAPPPLEFNKKRSRTGSVRIVKKDSR SIRTKLTIGGPAEKIVSAFHAVLSEHPNEDAEMSKCKSSVHRVRKMEKDVDIACNIVKDPKRKTLAKELVEEESIMKRCI ENLKLVEASRAALVSQLKEALHEQESELENVRTQIQVAQAQAEESSFMRKRLENEEISYKPSSSTTSVIDTNAKSEAATK KSASTIAAEVADKLAASSSSQFIMTSVLETFAAEEAKNAGLASESMSKPEQPIHLPDQYAFLSAPQLFATPNHSYPSALV HPPTMQNPAAAPQGQYIMMGNSSSQQFLESSGGIISPYGYGSIPPLPPGPPLPMENPMMPLTNQTLQIPPQPQQQAHVTQ HPPITMTQQAPAAPSFLPIQPPGNVYYGNHVPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51391
4 135 132 33.674
IPR006569
Gene3D
G3DSA:1.25.40.90
4 131 128 2.6E-30
IPR008942
PANTHER
PTHR12460
5 497 493 1.4E-133 –
CDD
cd16981
9 132 124 3.48481E-52 –
SMART
SM00582
11 132 122 9.6E-33
IPR006569
SUPERFAMILY
SSF48464
13 125 113 1.1E-13
IPR008942
Pfam
PF04818
59 120 62 1.0E-18
IPR006903
Coils
Coil
254 295 42 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0401200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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