Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0405900.1

Overview

Field Value
Gene ID LotjaGi4g1v0405900
Transcript ID LotjaGi4g1v0405900.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT2G33710.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112; TrEMBL-Plants: tr|B3IX36|B3IX36_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi4g1v0405900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78216942..78220005) extracted from Lotus japonicus Gifu genome v1.2.

CTCAGAAAACAGCTTATATATACTTTTATTGCACACGAGTCTTTGTTCAAAGGTGGCTATAACCAATTTGAACTTTTCCA TTCTTCATACGTGAAAATATCAATGCTGTTGTTGGCGTATTAGAGTTGACAATATTGAAGAAGGGTCTGATAAGTTTACA ACGGTGGCGAATCCTAGTGAAAAAAAGGGGAACAACAAGGTTGTTTGTTACACGAGACAGAGTGATTTGGATGAATTTGA AGAGAGACATGATCTTAAGTTGTTGTCAATGCCAATGATGTTTCATGGTTTCAATAGGGAGAAAGAGATGTCTGCAATGG TTTATGCTCTGACTCGTGTTATCTGTGGTGATGAGGAGGAGCATGGTGGTTATGATCATCAGAAAATGGAACATAGTGCA TTTGGAGGTGGTGGTGATGGTGATGATGCTAATTTTCATGTGACACCAAACATAGCTTCTTGTTCTGCAACACCATCTTA TGGTGGTGACAGTTTTTCCCTCAAGAGAAGGAGGGAAGATGGTGATTTCTCATGCAGAGCTTCACCCCCTGCTATTCCCC CAAGTAAGCACCAAAGTGAACATTTATGTTCTAAAGTTGTTTATTGAATGTATATTTTTGCATGCTTGGATAGAAAATAA AATGTTACTTTATTAAGTTTTTTCTACTAACTTTTGACATCTAGAACAATGAACACATGAAAAAACACCCATTAATTATA GGACAGGATCCTAACAACTTCCACACATGGACCCAGCTAGCAACAATATTAGTATTTGAATCCTCTTCACCAATATTTCA GGACCTGTTGGTTACTATATGAAATAATCCCATTTTAGACACCTAAGGCTATGTTTGGATTGATGGAACATAACGGAACG GAGGGGAATGAAATATAATGGAATGGAATGGAGCGGAACAGAATGGAATAAAAGTCTCCTTCCATTGTTTGGGTATTTTA GGATGGAACGGAACAAAGTTACTACTCCATTGTTTGGATAATGAACGGAGAGGAATAAGTTACAAATTTTTTTAGTACCA TATTACCCTTACTTTCTTTCTTGGAGCATTAGCTAGTTTTGTTTTCAAATTCTGACATGTCTAAAAAATGTAACGGGATA TCTAAATGGAGAAAACATTAATAAAAAATACCAGAAACCCAAATCTAACGCAAAACGCTAATTTTTTTTTACGAGATGCT TCGGCTTCCAATAAAAATTACAAATTGATTGCATATACCTACAAATACCTACAAAAGCCTGTGTTTGAAATAATATTTCA CAAAACACATTGAATAATGCAGCAAGGAATTGAACGCAGTAAGGAATTCAACAATGACACAAAGTTAAAAGCAATTATTA GGAACAAACAAGCCAGCAACGCAGCAGATAGAGAAAGGTTCATTATAAAAAACCAAGACCCATGTAGTGATGTAGAAATC TGCAACGAAAGAAGCAACAGGTTCTAAATGAGCGTGAAAGAAACTGGGTAGTAATAAGGGGGTGGTTAAGGGACATATTT GTATTTTTATAATTTTGTTAGATGTCAATAATTTTGCTCCATCCCATTCCTCCCAAATTGAGGGGGAATAAAAATGGGGG AAAGTAATGGAACATGATGGAGCACATTCCACCGGGCTCCATTCCTTTCCATCAATTTTTAATTAATCCAAACAGTGGAC CTCTTCCTCCATCCCCTCTCTTCCGCTCCATTCCCTCCCCCTCCATCAATCCAAACGAAACCTAAATACTAAACAACACA CCCTGCTTTTCTTGACTGAAACAATTTTCCATTTCCCATCCTATTAAAAACAACATATTAATGTTATAAATCTCACACTC ATACATTCTTTTTAATTAAAATGTCACAATTTGATTGGTGAAATAGGAAAATGGACACCAAATGAGGACAAATGAGTTCA TCTGTTTTTCTCTCTTCCTGTCACTATCATATTACATATTACATCTACTATCATTCTTTCCTCTCTTCCTAAATTAGATG TCTACACATACATGGAACATTATATTAGGCAACCAATATATTTTTGGTTTTGTCTAATTGAAAACAATGATCATTCTTCT TATGCTGAATTTCATGCTATTCAATTCAGTTGCAGAACGTTCAAGCAACTTGACCAACACAGCAACAACAAAAATAAGCC CAATGGTGAAACCAGTATACGAATACAGAACAGAGAATGTGAGGGAGGAAACAGAGCAACAACCGAAGAGAAAATACAGA GGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCAGAGACCCTTTCAAAGCTGCAAGAGTCTGGTTAGGAAC ATTCAACACAGCTGAAGAAGCAGCCAGAGCCTATGATCAAGCTTCACTGCGATTTAGAGGCAACAAGGCAAAACTCAACT TCCCTGAAAATGTGAGGCTCCTACAACAACCTTCCATCAATCAACCAACTACCCATTTCAGCAATTCAAATTCTTCAGAG CCAATAGTTCATGCAGAAGCTCAACACCACACTTTTCAGGGTTCCAGTGGTTCCAATTCAAGCAACTTTTATGACTATTC TCCTATGAGTTTATATGATCAGGCAAATGTGTCATCAACCATGGCTTCTCATCATCTTCAATCTTCCTCATCATCATCAT CATCATATTCTTCTATGTTTGCTTCTTCTGTGAGTTCTCTGCAAGAAGTTTCAGTTCCTTCGGTTTATTCTACTCAGCTG CCAGCACAGTATTCTGTCCATAGCTCCTCTCCCTCTGGCTCTGGCTGATATTCATGTCAATTTTCTTGGTCTAACACATG TATCCCTCAGACAATCATGTTCGAGTTGTGATCATTTCCATGCTCGTGGCGGGTGGGGTGAGCACACCAGTGGGTTTTTT TTCATGCTTTGTTTAGATGGAATCAAACATATACCGCTTCCTTGACAAAAAAAAACATATACAGCTTGAACCAGTATCTC TAGGTTATATTCATTCCATTTAAAGTACTAGTTTGTAATATTATCCTTTTGTATTTAGCTGTCTATTTCTCTCTTCAGAT ATCATCAATAATATTCTTGATGAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAATGATGTTTCATGGTTTCAATAGGGAGAAAGAGATGTCTGCAATGGTTTATGCTCTGACTCGTGTTATCTGTGG TGATGAGGAGGAGCATGGTGGTTATGATCATCAGAAAATGGAACATAGTGCATTTGGAGGTGGTGGTGATGGTGATGATG CTAATTTTCATGTGACACCAAACATAGCTTCTTGTTCTGCAACACCATCTTATGGTGGTGACAGTTTTTCCCTCAAGAGA AGGAGGGAAGATGGTGATTTCTCATGCAGAGCTTCACCCCCTGCTATTCCCCCAATTGCAGAACGTTCAAGCAACTTGAC CAACACAGCAACAACAAAAATAAGCCCAATGGTGAAACCAGTATACGAATACAGAACAGAGAATGTGAGGGAGGAAACAG AGCAACAACCGAAGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCAGAGACCCTTTC AAAGCTGCAAGAGTCTGGTTAGGAACATTCAACACAGCTGAAGAAGCAGCCAGAGCCTATGATCAAGCTTCACTGCGATT TAGAGGCAACAAGGCAAAACTCAACTTCCCTGAAAATGTGAGGCTCCTACAACAACCTTCCATCAATCAACCAACTACCC ATTTCAGCAATTCAAATTCTTCAGAGCCAATAGTTCATGCAGAAGCTCAACACCACACTTTTCAGGGTTCCAGTGGTTCC AATTCAAGCAACTTTTATGACTATTCTCCTATGAGTTTATATGATCAGGCAAATGTGTCATCAACCATGGCTTCTCATCA TCTTCAATCTTCCTCATCATCATCATCATCATATTCTTCTATGTTTGCTTCTTCTGTGAGTTCTCTGCAAGAAGTTTCAG TTCCTTCGGTTTATTCTACTCAGCTGCCAGCACAGTATTCTGTCCATAGCTCCTCTCCCTCTGGCTCTGGCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0405900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPMMFHGFNREKEMSAMVYALTRVICGDEEEHGGYDHQKMEHSAFGGGGDGDDANFHVTPNIASCSATPSYGGDSFSLKR RREDGDFSCRASPPAIPPIAERSSNLTNTATTKISPMVKPVYEYRTENVREETEQQPKRKYRGVRQRPWGKWAAEIRDPF KAARVWLGTFNTAEEAARAYDQASLRFRGNKAKLNFPENVRLLQQPSINQPTTHFSNSNSSEPIVHAEAQHHTFQGSSGS NSSNFYDYSPMSLYDQANVSSTMASHHLQSSSSSSSSYSSMFASSVSSLQEVSVPSVYSTQLPAQYSVHSSSPSGSG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF192
10 312 303 2.3E-69 –
PANTHER
PTHR31190
10 312 303 2.3E-69 –
Gene3D
G3DSA:3.30.730.10
139 200 62 3.4E-31
IPR036955
Pfam
PF00847
140 189 50 5.2E-14
IPR001471
ProSiteProfiles
PS51032
140 197 58 25.067
IPR001471
SMART
SM00380
140 203 64 2.8E-35
IPR001471
SUPERFAMILY
SSF54171
140 198 59 6.41E-23
IPR016177
CDD
cd00018
140 199 60 4.7366E-35
IPR001471
PRINTS
PR00367
141 152 12 4.8E-12
IPR001471
PRINTS
PR00367
163 179 17 4.8E-12
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…