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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0407600 |
| Transcript ID | LotjaGi4g1v0407600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT4G08250.1 GRAS family transcription factor; Swiss-Prot: sp|Q5NE24|NSP2_MEDTR Nodulation-signaling pathway 2 protein; TrEMBL-Plants: tr|G7LD66|G7LD66_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi4g1v0407600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78370835..78372693) extracted from Lotus japonicus Gifu genome v1.2.
TTTATCAGCCATGAATGTGATGGATTATGAACAATTTGATTGCTCATTTACCCCTTCCTTCATGAATCAACTCCATGAGT GTACCTTAGAAAATGTAAATGCAAATGCATTTCCTATCCAAGAAGATGATCTCTTATCTCCAAATTCCATCTTAGATGAA ATGTTTGATCATGATCAATCAGAAAATCTGTCACCTCCAAATACCATTCTGGATGAAATATTTGATCAACAGTCCATGGA AGAGTTGCTGCAGCAACATAACCAGGACTTTGATGTCATGAATCTTGATCTAGGGAATGAGTTATGTCATGGAGTTAGTC AGATAACCCAGAAGAATGTGCATGTTTCAAAGGAAGCTGATAAAGATTCATATTTGAATGGAATTCAAGCAGAGCTAATG GAAGAGACTAGTTTAGTTGATCTCTTGCTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGTATCTTGCTTCAGAGAT AATTGAGAAACTAACCAATGATGCCTCATCTTTACAAAATGGAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCAC AGGGCCTGTTTGATAAAAGTTCATCTCCAACTCCTAAATTACAGTACTACTGTGATCCTGTTTCTACACAGACAGACACT TTCTGTGTGTTGCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCCAACCAAGCAATCCTTGA AGCTACAGACGGTGTTGAAGACGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAATGGCCACCATTGATGGTTG ACCTTGCAATGAGGAAGAGCACTAGTACTACTTCACTCAGAGTAACAGCAATCACAGTGGACCAGCAAAGTGCTGCCTCT GCTCATCAAACAGGTAGAAGGCTCGAAGAGTTCGCGGCTTCGATCAATTTCCCATTCACTTTCAATCAGGTAATGATGGT GAGTGAAGAAGTTCTTCAAAGAATTGAACTTGGTCACTCCCTCATAGTCAATTGCATGATACACCAGTGGATGCCAAACA GGAGTTTCTCATTGGTCAAAACATTTCTTGATGGTGTGACCAAGTTATCTCCCAAGCTTGTTGTTTTAGTTGAGGAAGAG CTTTTTAATTTTTCTAAACTCAAATCCATGTCATTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTACACTGCAATTTC TGATTCACTTGCTAGTGGTATGTGGGGTAGCCATAAGGTGGAGTTTGCCCTGATAGAAAAACAGGTTCTGGGGCTTAGAA TTTTGGACAGTGTGAGGCAGTTCCCTTGTGAAAGAGAGGAGAGAATGTTGTGGGAAGAAGGGTTGTTTTCATTGAAAGGG TTTAAACGTGTTGGTGTGAGTAGCTCTAATATCTCTCAAGCTAAGTTCTTGGTGAGCCTGTTTGGGAAAGGGTATTGGGT GCAATTTGAGAAGTGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATCTGGGTACCAATGACTA ATCTGAGTGACAAGGTCAAATAGATTACTGAGTATTTGTTGTTTTCTTTTAAATGTTGAGGTGATGATATAAGTGATTAG AGGGTTAAGTGATGTTTGTGGGATTCTTCATTCCAGTAAATGGGATGCGATTAAGGAGATTTCAATATATTTGTACAAAT TTATTAGTTGAGGCTCTCTAAATTATTAATGTATGAGAGTATGTTTGCTCTTCCTCTACCTCACTAATAACATTGAACTC CTTTAAAAAAAAATCCTAATCTTTCAGTTTTTTCCGAACCTTTTGGGTCTTCTTCTTTATTCGCTTTTCTTGGCAATCTT TATTGAAGGGATGCACGAG
CDS sequence (LotjaGi4g1v0407600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTGATGGATTATGAACAATTTGATTGCTCATTTACCCCTTCCTTCATGAATCAACTCCATGAGTGTACCTTAGA AAATGTAAATGCAAATGCATTTCCTATCCAAGAAGATGATCTCTTATCTCCAAATTCCATCTTAGATGAAATGTTTGATC ATGATCAATCAGAAAATCTGTCACCTCCAAATACCATTCTGGATGAAATATTTGATCAACAGTCCATGGAAGAGTTGCTG CAGCAACATAACCAGGACTTTGATGTCATGAATCTTGATCTAGGGAATGAGTTATGTCATGGAGTTAGTCAGATAACCCA GAAGAATGTGCATGTTTCAAAGGAAGCTGATAAAGATTCATATTTGAATGGAATTCAAGCAGAGCTAATGGAAGAGACTA GTTTAGTTGATCTCTTGCTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGTATCTTGCTTCAGAGATAATTGAGAAA CTAACCAATGATGCCTCATCTTTACAAAATGGAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCACAGGGCCTGTT TGATAAAAGTTCATCTCCAACTCCTAAATTACAGTACTACTGTGATCCTGTTTCTACACAGACAGACACTTTCTGTGTGT TGCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCCAACCAAGCAATCCTTGAAGCTACAGAC GGTGTTGAAGACGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAATGGCCACCATTGATGGTTGACCTTGCAAT GAGGAAGAGCACTAGTACTACTTCACTCAGAGTAACAGCAATCACAGTGGACCAGCAAAGTGCTGCCTCTGCTCATCAAA CAGGTAGAAGGCTCGAAGAGTTCGCGGCTTCGATCAATTTCCCATTCACTTTCAATCAGGTAATGATGGTGAGTGAAGAA GTTCTTCAAAGAATTGAACTTGGTCACTCCCTCATAGTCAATTGCATGATACACCAGTGGATGCCAAACAGGAGTTTCTC ATTGGTCAAAACATTTCTTGATGGTGTGACCAAGTTATCTCCCAAGCTTGTTGTTTTAGTTGAGGAAGAGCTTTTTAATT TTTCTAAACTCAAATCCATGTCATTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTACACTGCAATTTCTGATTCACTT GCTAGTGGTATGTGGGGTAGCCATAAGGTGGAGTTTGCCCTGATAGAAAAACAGGTTCTGGGGCTTAGAATTTTGGACAG TGTGAGGCAGTTCCCTTGTGAAAGAGAGGAGAGAATGTTGTGGGAAGAAGGGTTGTTTTCATTGAAAGGGTTTAAACGTG TTGGTGTGAGTAGCTCTAATATCTCTCAAGCTAAGTTCTTGGTGAGCCTGTTTGGGAAAGGGTATTGGGTGCAATTTGAG AAGTGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATCTGGGTACCAATGACTAATCTGAGTGA CAAGGTCAAATAG
Protein sequence (LotjaGi4g1v0407600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVMDYEQFDCSFTPSFMNQLHECTLENVNANAFPIQEDDLLSPNSILDEMFDHDQSENLSPPNTILDEIFDQQSMEELL QQHNQDFDVMNLDLGNELCHGVSQITQKNVHVSKEADKDSYLNGIQAELMEETSLVDLLLTAAEAVEAQNWYLASEIIEK LTNDASSLQNGDSLLNRLALFFAQGLFDKSSSPTPKLQYYCDPVSTQTDTFCVLQILQELSPYVKFAHFTANQAILEATD GVEDVHIIDFDIMEGIQWPPLMVDLAMRKSTSTTSLRVTAITVDQQSAASAHQTGRRLEEFAASINFPFTFNQVMMVSEE VLQRIELGHSLIVNCMIHQWMPNRSFSLVKTFLDGVTKLSPKLVVLVEEELFNFSKLKSMSFVEFFCEALHHYTAISDSL ASGMWGSHKVEFALIEKQVLGLRILDSVRQFPCEREERMLWEEGLFSLKGFKRVGVSSSNISQAKFLVSLFGKGYWVQFE KCRLALCWKSRPLTVASIWVPMTNLSDKVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 501 | 455 | 8.3E-172 | – | |
| PANTHER | 47 | 501 | 455 | 8.3E-172 | – | |
| ProSiteProfiles | 126 | 500 | 375 | 55.406 | ||
| Pfam | 135 | 499 | 365 | 2.3E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0407600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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