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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0407800 |
| Transcript ID | LotjaGi4g1v0407800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DnaJ-like protein subfamily C member 2; TAIR: AT5G45420.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2; TrEMBL-Plants: tr|A0A0C3Y601|A0A0C3Y601_MEDTR Duplicated homeodomain protein; Found in the gene: LotjaGi4g1v0407800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78385129..78388119) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAAATATACTATATCTATGAGAAAACGATGACGTTTTAGATTTCCTTTTCAATTGTTATTCACTGTCAACGCCAGAG AAGGAGGAAGAAGAAAGAGTGTGATCGTGACAACTGACAACAATGGAGTTTCTGGACGAAGACGCGAGGCCACGCTTCCT CTTCCAATCAGGAGCCGCAGCAGCAGCTGCAGAGCCACAACCTCACCTCCACAAACCCACCAAGCTAGTCCTCTTCATCA CCATCACTCTCTCTTCCATCCTCTTCGCCCTCGCACTCTTCTTCTTCCAATCCGAACCCTTCAAATCGATCCTCTTCTGG CTCTCCCTCTCCCTCCTCATCGGCCCCTTCGCCCCGATTTCACTCACCGGCGGCGATGTTAGCGTCGGCCGCGGAAACAT CGTAAATTTCCCTGATGAACACGCCGCCGCCGAGGAAGATCAGAAGCCTCCCCCGCAGCGGCGATCCAGGTCACGCAGAT CGGATGAGCCCGCGTTTGCTCCCGTACCGACGTTAGCGAAATCCGAGCATCGGAGAGGTGAGCAGAACGGCGTTGCTGCG GTGGCGGTGGCGGAGGAGGAGAAGGGGTGGAATGAGGAGGATGTTGAGATTCTGAAGAAGCAGATGGCGAAGCATCCTGT TGGGAAGCCTGGACGGTGGGAGGCGATTGCGGCGGCGTTTGGAGGGCGGCACAAGGCGGAGAGCGTGATCAAGAAGTCTA AGGAGTTAGGGGAGAAAAGAAGCGACGATTCGGACTCGTACGAGCAGTTTTTGAAGAAGAGGAAGGCGGCGGATAAGAGG GGTGGTGGTGAAGAAGAAGAAGGGAAGGTTGAGGAGGAGACTAATTGGAGTAATGGGGAGGACATTGCATTGCTGAATGC TTTGAAAGCGTTTCCGAAGGACGCTCCGATGAGATGGGAGAAGGTTGCTGTTGCAGTTCCTGGGAAATCCAAGGCTGCTT GTGTGAAAAGAGTTGCTGAATTGAAGAAAGGGTTTCGGAGCTCAAAAGGTGCTTCCTAAGGGTAAATGGATTCTTTTTGT TCTCGAATTCTAATACGCGGGAGTGTGAAATGCTGTTTCGGTGAGGTTAATGGATTGATGAACTTGTAACTTATGCTGAT AATTTTTTGTTTATTGACATGGGAAGATATTGTTAAAGATGATCTCATTATTTATAATATCCCTCATAATCTGGGTTTTG ATCGAGCTCAATGGTTGTAGTATGATCCATATAGCCGACCTCACTTGGTGAGATAAGGCTTTTGTTGTTGTTGTTGTTAT TTGATTTATGAATTACATTGATAATTGGTTCGGTTTAGGAAGATCTTCCTCAGTTCCTCTCATCAAGTTAACACGTAAAT TCTTTTCATGTAAATTTATGGAATGCATAGAATACAAGATTGTGTATTCAGAATTTTATTATATAGTACTTGAGCCTCAC AGTGCCTTTGCTGTCTGTGATTGAAACATAAACAAGTTTAGGTTGTTGACATGTTGTGTGCTTTAAAGCACCAATACCTT CATCCACTGGCTCAGGCTGGGATGCATGGATTGATTAGCATGTTTATGTTCACATGTTGTGTGCTTCAAAGCACAAAATC CTCCATCCACTGGTGTTGGGAGACATGAATCCATTAGGATGTTTAAGTGATGAGATGAGATAAGGATAACAGTAGGAACA AGGATAAGTGTGATTGTGCCAATTTAATGTTTCTACTTTGATGTGGGGATTCTTCCGGTTTGGTTGTTGTTTTAGCTATG AAATTGCCGTTTGTTCAGCTTTGTGAAGTCAAACCATTTTCTGAATTCTTTCCCTTTGTATTTTTGTCCTGATTCCTGAA TGGATGTACAGTTAGGGTAACAGCCAGGTTTTTCGTATTTTCCCTCATGCTGCCAACCATTTCCTCAATTTAGTTTGTGA AACTTCGATTTAACTCTTCTACAGTTTCTGGGTTTTGAATATTTTGTACTTTTGTAGCTCTGAAATTTGTAAAAGATACA CATTGTAGCTTTGACTAGATGCGGATCCGGAGAGAAAACATGGTACCGAAACTCATTTTCAAACATGCACTTGGATTTCA AGCGCCTTATGTTTCAGCATCCTCTTCTATGATTTGTATGCAGTTCTACTTTCTATGAAATGCATCTCTGTCGGTCAGTG AGAATGTCTTGATGGGGCTTTCAATTCCTTCTGTGTGCCCACAATTTTTCCTAGTTTGTTCCTTTACTTGGGTGAGATAA AAGTCTGGGCATGTCATATTTGTAATCTGTAACTGTAAGTGGGGATTGCCTTTTTATTCCTCACAAAGTTTCTGCTCAAG TGTTTGACCTCTGATTGCAAGCTACATATTTTTTGGGCAATTGTTATCTGGTCTTCAATGGGAAGGGGTCACTGTCTTGG TTGCCGAGCATCAAAAGAAAGGTTTATCATATGCGTTCTTGTAAAATGATATTGGAACTAGTTGCAATTTGCATGCTGGT ACTACTTGGTTCCATAAACACCATCTCATCTTAGTTTTTCTTGCACTGGGTTGTTTTGGTTTATGTTTATGGGAGCATGC TGACTTCTGCATAAAACTTGTTAATATGGTAAACTCAGGGTTCTTCTGGGCTTTTATTCTTAGTTTGTTTATGTTGCAGT AATTTGTAAACTCTTGTTCCATTATGTTACCCAACTGAATCAATGCCAGGGGGTATGGTAGATTGGTAGGGCTTCTTCAA GGATGTATAATCTACCGCTTGGCACATATCTGGAAATCTTATTACCATACAAAGTGTGTCATTTTTTTATCAAGTCATGC TTCTAGCACCAGCAATGTTCCGTAATTTGGGCTACAAAAGTCACAACCGCACACATTGTTCATGCATGTTTAGAAATCAT TCTACAATTTCTACAATAGATTTTAAAGTCAGAATCAATAACTTCCACAAGTAGCTTTTGGGTTTTAGAATGGATTATGC TGATAGAGAAGCTAATCCAAACATGCTATTC
CDS sequence (LotjaGi4g1v0407800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCTGGACGAAGACGCGAGGCCACGCTTCCTCTTCCAATCAGGAGCCGCAGCAGCAGCTGCAGAGCCACAACC TCACCTCCACAAACCCACCAAGCTAGTCCTCTTCATCACCATCACTCTCTCTTCCATCCTCTTCGCCCTCGCACTCTTCT TCTTCCAATCCGAACCCTTCAAATCGATCCTCTTCTGGCTCTCCCTCTCCCTCCTCATCGGCCCCTTCGCCCCGATTTCA CTCACCGGCGGCGATGTTAGCGTCGGCCGCGGAAACATCGTAAATTTCCCTGATGAACACGCCGCCGCCGAGGAAGATCA GAAGCCTCCCCCGCAGCGGCGATCCAGGTCACGCAGATCGGATGAGCCCGCGTTTGCTCCCGTACCGACGTTAGCGAAAT CCGAGCATCGGAGAGGTGAGCAGAACGGCGTTGCTGCGGTGGCGGTGGCGGAGGAGGAGAAGGGGTGGAATGAGGAGGAT GTTGAGATTCTGAAGAAGCAGATGGCGAAGCATCCTGTTGGGAAGCCTGGACGGTGGGAGGCGATTGCGGCGGCGTTTGG AGGGCGGCACAAGGCGGAGAGCGTGATCAAGAAGTCTAAGGAGTTAGGGGAGAAAAGAAGCGACGATTCGGACTCGTACG AGCAGTTTTTGAAGAAGAGGAAGGCGGCGGATAAGAGGGGTGGTGGTGAAGAAGAAGAAGGGAAGGTTGAGGAGGAGACT AATTGGAGTAATGGGGAGGACATTGCATTGCTGAATGCTTTGAAAGCGTTTCCGAAGGACGCTCCGATGAGATGGGAGAA GGTTGCTGTTGCAGTTCCTGGGAAATCCAAGGCTGCTTGTGTGAAAAGAGTTGCTGAATTGAAGAAAGGGTTTCGGAGCT CAAAAGGTGCTTCCTAA
Protein sequence (LotjaGi4g1v0407800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFLDEDARPRFLFQSGAAAAAAEPQPHLHKPTKLVLFITITLSSILFALALFFFQSEPFKSILFWLSLSLLIGPFAPIS LTGGDVSVGRGNIVNFPDEHAAAEEDQKPPPQRRSRSRRSDEPAFAPVPTLAKSEHRRGEQNGVAAVAVAEEEKGWNEED VEILKKQMAKHPVGKPGRWEAIAAAFGGRHKAESVIKKSKELGEKRSDDSDSYEQFLKKRKAADKRGGGEEEEGKVEEET NWSNGEDIALLNALKAFPKDAPMRWEKVAVAVPGKSKAACVKRVAELKKGFRSSKGAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 296 | 296 | 2.0E-123 | – | |
| PANTHER | 1 | 296 | 296 | 2.0E-123 | – | |
| Phobius | 35 | 55 | 21 | - | – | |
| TMHMM | 36 | 55 | 20 | - | – | |
| Phobius | 56 | 61 | 6 | - | – | |
| Phobius | 62 | 81 | 20 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 82 | 298 | 217 | - | – | |
| MobiDBLite | 98 | 142 | 45 | - | – | |
| MobiDBLite | 99 | 121 | 23 | - | – | |
| Gene3D | 148 | 208 | 61 | 3.4E-14 | – | |
| SMART | 152 | 205 | 54 | 6.4E-4 | ||
| SUPERFAMILY | 154 | 192 | 39 | 5.85E-6 | ||
| CDD | 156 | 198 | 43 | 2.70143E-4 | ||
| ProSiteProfiles | 156 | 189 | 34 | 5.239 | ||
| MobiDBLite | 199 | 242 | 44 | - | – | |
| Gene3D | 234 | 298 | 65 | 8.0E-15 | – | |
| SMART | 238 | 290 | 53 | 7.2E-5 | ||
| SUPERFAMILY | 240 | 286 | 47 | 1.72E-8 | ||
| CDD | 241 | 283 | 43 | 3.99891E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0407800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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