Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0408500 |
| Transcript ID | LotjaGi4g1v0408500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G09760.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9LXD9|PME51_ARATH Probable pectinesterase/pectinesterase inhibitor 51; TrEMBL-Plants: tr|G7LD86|G7LD86_MEDTR Pectinesterase; Found in the gene: LotjaGi4g1v0408500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78453971..78457146) extracted from Lotus japonicus Gifu genome v1.2.
CTCACAACTTCCAAATTCCAATCCAACCCCACTCATATTGTATAAATCACCATCTCAATCTCAATCAAACCATGAACCTT CAACCTTTTGAAAGTACCCATTAAACCCACCACCACCACCTTCTCCCTCACAATATCCACCTTTCTCACCATGTCCCCTC TCCTCCCCCTCTCTTTTCTCCTCCTCATCCTCACCCTCTCCTCCGCCTCCCACAGCCACAACAACCACCACCACCATTCC CCCACCCCCTCCCTCCCCGACGCCACCGCCGCGCCAGAAATCCAGCAAGCCTGCAAGGCCACCCGCTTCCCCCAGCAATG CGAATCCTCCCTCTCCCACCTCCCTCCTAACCCAACCTCTCTCCAGCTCCTCCAATCCGCCATCTCCGCCACCTCCACCA ACCTCGCCACCGCCCAATCCATGGTCAAGTCCATCCTCGACTCCGCCTCCGGCAGCCGCAACCGCTCCGTCGCCGCCACC ACCTGCCTCGAGGTCCTCGCCAACTCCCAGCACCGCATTTCCCTCGCCAACGACTCCCTACCTCACGGCAAGAACAAAGA CGCCCGAGCCTGGCTGAGCGCCGCCCTCGCCTACCAATACGACTGCCGGAACGGCCTCAGCTACGCCAACGACTCCCGCT CCGTCGGGGAAGCCATGTCATTCATCGACTCCGTCTCCATTCTCGCCAGCAACGCCCTCACCATGACCTTCGCCTACGAC GTCTTCGGAAACGACACCGCGTCGTGGAAGCCACCAGCAACCGAGCGGAACGGATTCTGGGAGAACGGCTCCGGCGCCGG CTCCGGCCACGTCACCGACGGAGATTTCCCGACGAAGGAGAGCGCGGACGTGACGGTGTGTAAGGGAGGGTGCAGTTACA AGACGGTGCAGGAGGCGGTTAACGCCGCGCCGGATAACGGCGTTGAGGGGAAGAGGTTTGTGATATACATTAAAGAAGGG GTTTATGAAGAGACCGTTAGGGTTCCGTTAGAGAAACGGAATGTGGTGTTCTTGGGAGATGGCATGGGGAAGACGGTAAT CACCGGCTCTGCAAATGTGGGACAGCCGGGGATGACGACTTACAACTCAGCCACCGTCGGTAAAGCTTTTTCTCTTTTTA TTTCCTTTTTAAAATAATTATAATTTTATTTGACTAATTAAATTTTACTACCTTTCTCTAGTAAGAATATGTTAAAAAAT CAGAAAAGTTTCTGTTTTTAATATAAAATATTTTTCTGATAGTCAAGGTTGACTACTTGACTTCCTTTTAAGTGTTTTGT GCTCTGTGGACCATTAATTGTAAATAGAATTGATTTTATTAAAAATTAATTATTGTATAACTGAATTCAAGGTGATTCAT TAATGGTGTAAAATTTAGTTGAAAATCCACGTTTGAATATATTCATTCTAGAGACTAGAGAAGTTATAAGGATTTAGAAT TTCATCCCCAAATTGATTTCAGACCTAAAATGAATTGTAAAATAAAACATTCATACATAATAAAAAATGATTATGAATTC TAAAGCTAGTAAAGGTGAAACTATAGATGCTCTAAAATTTGGGGGTGTTTTATCATGTGGGCCATTGGTGTGGATGAACT CATGAATTAGCTTTCTTTCATTTGATAGAGGTGTTTTAGATGTTCTATTGCAAGAATTGTGAGAAAAAATGTTTTACAAA TCACTTTTGGAAGCCCTTTTCTAGTAGGGAGAGAGGTGGGAAGTACGTATAAGGATTTAAGGAGGTAACCATCAATGATT GAATAATTATAAAAGAAAAGTGTCCTCCAAATCATACTTACTTGGATTTATATAATTTTAACCCATTTTCAATAAGTTCA CTGAACCTTCACTTTCATTTGAGTGCGTTTGTATTTCTGTCAGCGTACATTCTAAAGCAGTTTGAATATACTTTTAATCA ATCCAGGTCTCTTTTGTTATTGGAGCGAATGTGCTTTAACCCAACTTGAACTTACTTCCAATCACACACTGTTATGGTTA ATGATGGTTCTTTTTTCATTTGTTTTTTGGCAGCTGTTCTTGGCGATGGATTCAGGGCAAAGGATCTCACAATCCAAAAC ACAGCAGGTCCTGATGCTCACCAAGCAGTGGCCTTTAGATTAGACAGTGATCTTTCTGTGATTGAGAATTGTGAATTCTT AGGCAATCAAGACACCCTCTATGCTCACTCCCTGCGCCAATTCTACAAATCATGCCGCATTGAGGGCAACGTGGACTTCA TCTTCGGAAACTCTGCTTCAATTTTCCAGGACTGCCAAATCCTGGTTCGTCCCCGGCAACTCAAGCCGGAGAAAGGCGAG AACAATGCGGTCACGGCACATGGCAGAACAGACCCTGCACAGGCCACAGGCTTTGTTTTCCAGAACTGCTTGATCAATGG CACTGAGGATTACATGGCATTGTACCACAGCAACCCAAAAGTGCACAAGAACTACTTGGGCAGGCCATGGAAGGAGTACT CTAGGACAGTTTTTATTCATTCATTGTTGGAAGCTCTAGTCACTCCTCAGGGTTGGATGCCATGGAATGGTGAGTTTGCC CTCAAGACACTTTATTATGGGGAGTTTGAGAATTCTGGACCAGGTTCTGATTTGTCTCTGAGGGTTTCCTGGAGTAGCAA GGTCCCTGCTGAGCATGTGTTGACATATTCAGCGGAGAATTTCATTCAAGGTGATGATTGGATTCCATCATCTCAGTTAT CAAAGCATCATCGCCGCAAGGGTCATCGTCATGGAACCGGTAGAACAAGACATCAGTAATTGGGGGACTTTTATTCACCC CGCATTTGTAATTACATTACCAGTTACAAATACAATAAACATATCTAGATCTCAAAAGTATGGGAAATAACTCCATATCA GTTTATAAAATTCTGTTTGGAAACTCTTCTACAATTGATTTTGTCCGCAACTACTGAAAGCTTCTGTGAGTATTTTGTCT TTAAGAATTCCAAATATGTTAAAGTCTTGCATGATAGATTCTGAGGTTGGTCCTACTCACTTTATGGGGATGGTCTCTAT TTGGATTATTTACTTTTCAATATTAATAATTGTTGTTTACATAGCATGAGCTGATCAAGTAACACTAATATACCAGTACG ACAACATGCTTTCTATCCAATGGAGCTAAGAAAACATGATATGAGGAAAGAAAAAC
CDS sequence (LotjaGi4g1v0408500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCCTCTCCTCCCCCTCTCTTTTCTCCTCCTCATCCTCACCCTCTCCTCCGCCTCCCACAGCCACAACAACCACCA CCACCATTCCCCCACCCCCTCCCTCCCCGACGCCACCGCCGCGCCAGAAATCCAGCAAGCCTGCAAGGCCACCCGCTTCC CCCAGCAATGCGAATCCTCCCTCTCCCACCTCCCTCCTAACCCAACCTCTCTCCAGCTCCTCCAATCCGCCATCTCCGCC ACCTCCACCAACCTCGCCACCGCCCAATCCATGGTCAAGTCCATCCTCGACTCCGCCTCCGGCAGCCGCAACCGCTCCGT CGCCGCCACCACCTGCCTCGAGGTCCTCGCCAACTCCCAGCACCGCATTTCCCTCGCCAACGACTCCCTACCTCACGGCA AGAACAAAGACGCCCGAGCCTGGCTGAGCGCCGCCCTCGCCTACCAATACGACTGCCGGAACGGCCTCAGCTACGCCAAC GACTCCCGCTCCGTCGGGGAAGCCATGTCATTCATCGACTCCGTCTCCATTCTCGCCAGCAACGCCCTCACCATGACCTT CGCCTACGACGTCTTCGGAAACGACACCGCGTCGTGGAAGCCACCAGCAACCGAGCGGAACGGATTCTGGGAGAACGGCT CCGGCGCCGGCTCCGGCCACGTCACCGACGGAGATTTCCCGACGAAGGAGAGCGCGGACGTGACGGTGTGTAAGGGAGGG TGCAGTTACAAGACGGTGCAGGAGGCGGTTAACGCCGCGCCGGATAACGGCGTTGAGGGGAAGAGGTTTGTGATATACAT TAAAGAAGGGGTTTATGAAGAGACCGTTAGGGTTCCGTTAGAGAAACGGAATGTGGTGTTCTTGGGAGATGGCATGGGGA AGACGGTAATCACCGGCTCTGCAAATGTGGGACAGCCGGGGATGACGACTTACAACTCAGCCACCGTCGCTGTTCTTGGC GATGGATTCAGGGCAAAGGATCTCACAATCCAAAACACAGCAGGTCCTGATGCTCACCAAGCAGTGGCCTTTAGATTAGA CAGTGATCTTTCTGTGATTGAGAATTGTGAATTCTTAGGCAATCAAGACACCCTCTATGCTCACTCCCTGCGCCAATTCT ACAAATCATGCCGCATTGAGGGCAACGTGGACTTCATCTTCGGAAACTCTGCTTCAATTTTCCAGGACTGCCAAATCCTG GTTCGTCCCCGGCAACTCAAGCCGGAGAAAGGCGAGAACAATGCGGTCACGGCACATGGCAGAACAGACCCTGCACAGGC CACAGGCTTTGTTTTCCAGAACTGCTTGATCAATGGCACTGAGGATTACATGGCATTGTACCACAGCAACCCAAAAGTGC ACAAGAACTACTTGGGCAGGCCATGGAAGGAGTACTCTAGGACAGTTTTTATTCATTCATTGTTGGAAGCTCTAGTCACT CCTCAGGGTTGGATGCCATGGAATGGTGAGTTTGCCCTCAAGACACTTTATTATGGGGAGTTTGAGAATTCTGGACCAGG TTCTGATTTGTCTCTGAGGGTTTCCTGGAGTAGCAAGGTCCCTGCTGAGCATGTGTTGACATATTCAGCGGAGAATTTCA TTCAAGGTGATGATTGGATTCCATCATCTCAGTTATCAAAGCATCATCGCCGCAAGGGTCATCGTCATGGAACCGGTAGA ACAAGACATCAGTAA
Protein sequence (LotjaGi4g1v0408500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPLLPLSFLLLILTLSSASHSHNNHHHHSPTPSLPDATAAPEIQQACKATRFPQQCESSLSHLPPNPTSLQLLQSAISA TSTNLATAQSMVKSILDSASGSRNRSVAATTCLEVLANSQHRISLANDSLPHGKNKDARAWLSAALAYQYDCRNGLSYAN DSRSVGEAMSFIDSVSILASNALTMTFAYDVFGNDTASWKPPATERNGFWENGSGAGSGHVTDGDFPTKESADVTVCKGG CSYKTVQEAVNAAPDNGVEGKRFVIYIKEGVYEETVRVPLEKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVAVLG DGFRAKDLTIQNTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSASIFQDCQIL VRPRQLKPEKGENNAVTAHGRTDPAQATGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVT PQGWMPWNGEFALKTLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDWIPSSQLSKHHRRKGHRHGTGR TRHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| PANTHER | 7 | 543 | 537 | 1.5E-268 | – | |
| PANTHER | 7 | 543 | 537 | 1.5E-268 | – | |
| TIGRFAM | 8 | 183 | 176 | 1.2E-15 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 564 | 545 | - | – | |
| SMART | 39 | 185 | 147 | 7.9E-24 | ||
| Gene3D | 42 | 186 | 145 | 7.7E-13 | ||
| SUPERFAMILY | 43 | 186 | 144 | 6.02E-19 | ||
| Pfam | 44 | 185 | 142 | 7.9E-21 | ||
| CDD | 47 | 185 | 139 | 1.27385E-25 | – | |
| Gene3D | 228 | 549 | 322 | 4.0E-116 | ||
| SUPERFAMILY | 231 | 543 | 313 | 3.43E-97 | ||
| Pfam | 233 | 537 | 305 | 1.0E-123 | ||
| MobiDBLite | 544 | 564 | 21 | - | – | |
| MobiDBLite | 546 | 564 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0408500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…