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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0408900 |
| Transcript ID | LotjaGi4g1v0408900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein trichome birefringence; TAIR: AT1G48880.1 TRICHOME BIREFRINGENCE-LIKE 7; Swiss-Prot: sp|F4I037|TBL7_ARATH Protein trichome berefringence-like 7; TrEMBL-Plants: tr|V7CR43|V7CR43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0408900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78513807..78517985) extracted from Lotus japonicus Gifu genome v1.2.
ATCCTTTTTGTACCTTCTTAAGTAGTAGAAAATTGTAAACATGAACCAGAAACAAATTAAGCAAAATCAAACATTTCCAT TGAAAGCAAAAGTAGCTTGAATGCTTGTTTGGTGATTTGTCTTATGATAACAGATGTCTTAACAACAACCCTGTTCTCCG CGTCCTGTCTTCAAATCAAAGTATCAAACCACCACCGATCCAAACCTCCGATGACACATGTTCCATCCCCAACAAGATTT CATTTTTCTGTAACCCTTTATACCTCATTCCATTTTCTGCATCTGGGTCTCTTCCTCTCCCTCCAAAATTAAATCTTTCC ATCTGGGCCATTGAGTTTTGCCTCTAGGGTTGATTGGTGCTTGTTGAGATGCTAGTTGTTGATTCATGTTCCTCTGTGAT TGCATGAACCGTGATGGCTTTGGATTTGGAATGTCACAATGAGTGCTTTGAATAGAAGCATTTCCTTCAACAGGGCTGCA TCTTTCAATCGGAAGACTTTAAGCGTTGGAAGTCCTAGAGTTAATGTTAGCCATAACCGATTCGGATGTGTTTCTCTCAG GCTTCAGGTTCTTGTGATTATTGGTTCTGTGATTTCCTTCTTTGTAGCGGTTGGTGGTGGCTACATGTATTTGCTTCCTA GTCTCAGGCTAGCGTTTTTTCATAACCAAGCTCTCATTTCAGATAACAACAATGGATCAGTGAGGAACTGTGATGTGTTT GATGGAAGCTGGGTCCAGGTTCCTGATTCCCCTTTGTATAATGCTACAGAGTGTCCTTTTGTGGAACAAGGATTTGATTG TTTAGAGAATGGGAGGGATGACATGGATTATCTTACATGGAGGTGGAAGCCTAAAGGTTGTGAAATTCCAAGGTTTGATG TGCGTGGAGTTTTGGAAATGCTGAGAAGCAAAAGGGTTGTTTTTGTTGGTGATTCAATGAGTAGAACTCAGTGGGAGTCT CTGATTTGTATGCTGATGGCTGGGGTGGAGGATAAGGAGAGTGTTTATGAAGTGAATGGGAATAGGATAACAAAGAGGAT TAGATTCTTAGGTGTCAGGTTCAGTGCCTTCAATTTCACCATTGAGTTTTTTCGCTCTGTTTTCCTGGTGCAGCAGGGGA AGGTGCCTTGGCATGCACCAAAGAGGGTGAAATCAACACTTTTGTTGGACAAGTTAGATGATATAAGTGACCAGTGGATT AATTCTGATATTCTTATATTCAACACTGGACATTGGTGGGTGCCATCTAAGCTTTTTGATCTGTAAGCTTCCCTTCCTTA TCACATCTTAATAGTAAGCCTATTAGTGTTGTTATTTGTGACCATATCTGTTATAGTTGATTCTACTGCAATTCATTGGA AATTTTTACTTAGAGGTTTTGTTTTAAGGGGAAAACTGTTTACCAAAAAGGAAGTTTACATAACAGTTTGCTTAATACCT CATAATAGCTTTTGTTCTCTTATTAGGTCTAGGGGTATGATTTTGCTGTTCTTGAATGTCATTGTATAAAAGAGGTAATG TAAGCTATGGTTTTAGAGTTTTAGATGCATGAGCTGCCAAAATGCTGTCGTTTTGTTATTAAATGAAATATACCTCCAGA GATGTGATGATTCTTTCCTTGCCAATTCTTGGAAATCAAGATGATTGACCCTTCGATTTTGTCTTCTTATTTATGCTCAC TTGGAATTGTTGTTGTTAGTGGGGTATTGTAGGACCCTCATATATATCAGAAGAAAACCATGCAGTGAACTTATATAATA GTCATCATTTATCAAACATTCATTCAATTTCTAATTGTTAGGCATGATCTGTGTTTTCATATGAAGTCCTTTTTTTTGGG GTTCCTGTTTAAACTGGTCCTCTTCTTGCATTCACCAGAGGATGCTTTTTCAAGGTTGGAAACTCTCTGAAGCTTGGGAT GTCTATTCCTGATGCCTTTAAAATTGCACTTGAAACTTGGACATCATGGGTTGAGAGAAAGATTGATAAAAATAGAACTC GCGTCTATTTTAGAACTTTTGAGCCATCTCACTGGAGGTATTCCTACGATTTTGGTAACATAATGCTCTATTATAGTAGC TTTCTTATTTACATAACTGCTTAACACTATCTATTTTCTGGGTAAGGCCTTCCTAATAAGCTAGAACTATATTCTGTTAT CTTGTTCTGCAGTTTTTTTCACTTCAAGCTAATCCTACGTAGAATACTGTGCTCTCAGTTTCAAGGAACTCTATGCTGTG GATTTCCTAACCTTCGAAATCTCGCATGTTGGTTATGCCTTCTGTATAACTCTATATCAACAATTATTTATCCAGCTTTC ATTTCTGCTGCAGTGATTCTACCCGTAGGACTTGCAATGTGACCCAGTACCCGTCATTAGAAACTGATGGAAGGGATCAA AGCTTGTTTTCAGACATTGCTTTGGAAGTTGTGAAGAATGTTACCAGTCCTATAAATGTTCTCCATGTTACTTCTATGTC GGCTTTCCGGAGTGATGCACATGTTGGTAACTGGAGTGACAATCCAACTATTCAGGATTGTAGCCACTGGTGTCTACCTG GAGTACCTGATATGTGGAATGAAATCATCCTGTCCCAACTTTTTACTGAATATGAAATCCCTTTTCAGCAAATGGAATCA CATGGTAAGTTCAGTTATCTTCTAATACTTTTTTCACTTTACCTTGGAGCATATCTCCATGATTTACTTTATATTCATGA CTGGGTTAATTGCACAAACACCCCTTAACTTTTATTGGCATAGTCACTTGATTGGGCAAATATTCCCCTTTAACCTACTT TACATGTAAATTGACTGTGAAATCAATATACATATAAAAATTTAAAATATTTAACTATATATTACTCAATCTAGTTTACA CTTTTCTTATAATGGAAATCACTAAATCAATGTAATTGCAAGAAACATTTTGCCCATAGATGTAACTGTGTTCAGCCATA ATATATGTATTTGCCCTTGCAGTTCTATTTCTAGGACAATCCTCAACTATATAGTAAATCTTTTGAATTATAGGAATTTC ACATTCTGTTCAGTATCCTAGTCTTATGTTTAAAATATTGTAATTATTGTCACTTCATGCAGTTCCTGTTCTCAGGCTGA CCTAAGCATGGCACAGGAGCTATGCTGTTATTCTCATATATGCCATGCTGTTTAGGGTTATATTTTTGGATTAGGATCCT CGCATGTGAAATATCTCTCATGTTCTCTCACTTAAAGACACTTTTTCTTAAAAAAAAAGTAACCTTAACACACTTTATGA AAAATGTTAGCCCTTGTTTAGGCCACATCAGAGAGGAAGAGAGAGAGCCAATACTTTTCTGTCACTTGTCATGCATCATT TTTCAGGAAAAAATAAAAAAAATTCTTACATACTTTATTTCTGGGTGCAGATTAGAGACTAACAACATTCTTAGTAATTA CAAGGCTACCTCAAAAAATTCAGATGCTTCATGATATGGATCAGATTTCATTCTCATGCTAACTCCACAAATCTGAAGCC ATCTCTTTTTGCAATTGTTGACCTTGACATGGGATTGGTATCCTTGCTGCTCCCGGTTTCAGAGGATCACAACAGTTTTG TGAATATACTCAATATTGCACCAGATTTTGTAAAAGTAAGTTCCAGATAGGCATTAAGATTGTACCTGGTTCTCTACAAC CAAGAGATGAAACCGAATATATTTTTAATTGATTTTCCAATTCTTTGTATCCCGGAAAATGTATTGTCTGGGAGTTAACA AATTTGTCTGCATGTCATGACTTTTGGTTTTGGCCGTGACGATGCTATTGTTTGCCATAACAAAAGAGAAAGAGAAGAAA TAGTAAATCAATCAATTGTTTTTCCAGATTGCCCTGTCTTAACCATGGCATATTGGTTTGTTTCAAATGAAATCGTAGTT ACATTTTTGCTCAACTTGGATGTCATTTTTTCTTCTGGCCTTGAGAGGGAAGCACTGTTCTGATGACTGGTCATGGGATA ACGCCTAGTGAGCCACTTCATGTTGATGGTGGAGACAAATCCACACCAAACCCTTGACAGCATGCTAAGGTTGATCCGTG ATTAGTTTTGCTTGTTGTCAACGTTATAAGAATTCTGCGACCATTTCTGTTGCTGAAATTTAAAGGGTAAAATTATTAGA GTATCAAAGTACACATTGC
CDS sequence (LotjaGi4g1v0408900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCTTTGAATAGAAGCATTTCCTTCAACAGGGCTGCATCTTTCAATCGGAAGACTTTAAGCGTTGGAAGTCCTAG AGTTAATGTTAGCCATAACCGATTCGGATGTGTTTCTCTCAGGCTTCAGGTTCTTGTGATTATTGGTTCTGTGATTTCCT TCTTTGTAGCGGTTGGTGGTGGCTACATGTATTTGCTTCCTAGTCTCAGGCTAGCGTTTTTTCATAACCAAGCTCTCATT TCAGATAACAACAATGGATCAGTGAGGAACTGTGATGTGTTTGATGGAAGCTGGGTCCAGGTTCCTGATTCCCCTTTGTA TAATGCTACAGAGTGTCCTTTTGTGGAACAAGGATTTGATTGTTTAGAGAATGGGAGGGATGACATGGATTATCTTACAT GGAGGTGGAAGCCTAAAGGTTGTGAAATTCCAAGGTTTGATGTGCGTGGAGTTTTGGAAATGCTGAGAAGCAAAAGGGTT GTTTTTGTTGGTGATTCAATGAGTAGAACTCAGTGGGAGTCTCTGATTTGTATGCTGATGGCTGGGGTGGAGGATAAGGA GAGTGTTTATGAAGTGAATGGGAATAGGATAACAAAGAGGATTAGATTCTTAGGTGTCAGGTTCAGTGCCTTCAATTTCA CCATTGAGTTTTTTCGCTCTGTTTTCCTGGTGCAGCAGGGGAAGGTGCCTTGGCATGCACCAAAGAGGGTGAAATCAACA CTTTTGTTGGACAAGTTAGATGATATAAGTGACCAGTGGATTAATTCTGATATTCTTATATTCAACACTGGACATTGGTG GGTGCCATCTAAGCTTTTTGATCTAGGATGCTTTTTCAAGGTTGGAAACTCTCTGAAGCTTGGGATGTCTATTCCTGATG CCTTTAAAATTGCACTTGAAACTTGGACATCATGGGTTGAGAGAAAGATTGATAAAAATAGAACTCGCGTCTATTTTAGA ACTTTTGAGCCATCTCACTGGAGTGATTCTACCCGTAGGACTTGCAATGTGACCCAGTACCCGTCATTAGAAACTGATGG AAGGGATCAAAGCTTGTTTTCAGACATTGCTTTGGAAGTTGTGAAGAATGTTACCAGTCCTATAAATGTTCTCCATGTTA CTTCTATGTCGGCTTTCCGGAGTGATGCACATGTTGGTAACTGGAGTGACAATCCAACTATTCAGGATTGTAGCCACTGG TGTCTACCTGGAGTACCTGATATGTGGAATGAAATCATCCTGTCCCAACTTTTTACTGAATATGAAATCCCTTTTCAGCA AATGGAATCACATGATTAG
Protein sequence (LotjaGi4g1v0408900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSALNRSISFNRAASFNRKTLSVGSPRVNVSHNRFGCVSLRLQVLVIIGSVISFFVAVGGGYMYLLPSLRLAFFHNQALI SDNNNGSVRNCDVFDGSWVQVPDSPLYNATECPFVEQGFDCLENGRDDMDYLTWRWKPKGCEIPRFDVRGVLEMLRSKRV VFVGDSMSRTQWESLICMLMAGVEDKESVYEVNGNRITKRIRFLGVRFSAFNFTIEFFRSVFLVQQGKVPWHAPKRVKST LLLDKLDDISDQWINSDILIFNTGHWWVPSKLFDLGCFFKVGNSLKLGMSIPDAFKIALETWTSWVERKIDKNRTRVYFR TFEPSHWSDSTRRTCNVTQYPSLETDGRDQSLFSDIALEVVKNVTSPINVLHVTSMSAFRSDAHVGNWSDNPTIQDCSHW CLPGVPDMWNEIILSQLFTEYEIPFQQMESHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| PANTHER | 27 | 423 | 397 | 5.9E-219 | ||
| PANTHER | 27 | 423 | 397 | 5.9E-219 | ||
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 44 | 65 | 22 | - | – | |
| Phobius | 66 | 432 | 367 | - | – | |
| Pfam | 90 | 142 | 53 | 5.9E-22 | ||
| Pfam | 143 | 415 | 273 | 1.4E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0408900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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