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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0412700 |
| Transcript ID | LotjaGi4g1v0412700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT5G08750.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7LF16|G7LF16_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi4g1v0412700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78846207..78850986) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGTGTCAATGTGTAATAGAGAAAGTGCCAAAGTATTAAGAGAGTAATAAGCACTGCACTGAAAAACAGTAACTGCTG AAGGAGAAGAAGAAGAAGAAGGAGAAGGTAATAGCATGTGAAAGTGATGCACCAAAACCTAGCGTAACGTGTAACTCACA AAAACCAGTTCTAGCTCTCAATTCCGTCACGCCTCGTTCCAAATTCAATTCCAATTCACAGTAAGATACACAACTCTCCT TTTTCACATTCCATTTCAATTCAATGTCGTCCTTCTTCTTCATTCCTATGCGATTTCTTGTAACTCAAATTCATCATTCT TCAATTTACGTTTCATAGAGTTCATTCAGGTTTCAATTTTATTGAATCTGTTTCTTCATAGTAAAATTTAGGCTTTTGTG ATTGTTTTATTGAACCAGAATGGGACTATAATCCTGAATGCTCAAACGGTGTGTTTCAAATTCAATCTAAGGATAGAATT TTGATCAGATGGGTGGTGGAGAAAATGTGTCAGCAATGCCAAAGGAAAAACTCCGTAATGAAAGCTCCTCAAGTGTTGAA ACTGGGGATTTAGAATCTCACTCTCGCCTTAGCCTCGAGAAGGAAGTAGCCTTGGAAAGTTGCCGGGTATGCCAGTGTGC TGAATCTGATAAAAGAGGGGATGCTGCCCTAGAATTTCTGGGCATCATTCCAGTTTTAGAGAGCAAAGGGGAAGAAGTAG GGTCTGATGGCGTGGGGATTGCGAAAGATAACCGAAATGTTGAGAACGAATCTCGGGTGGTGGAATTTGTTAGCCCGGAT GGCGAGGTTTTCGTTTGTAAGAGTGATTTGGAACTGGGGTTGTCTCATCAAGATACGTTAGTTGAGCTCGGTTGTTGTTG TAAAAATGATCTTGCGTTAGTACATTATGCGTGCGCGCTTAAGTGGTTTATTAACCATGGATCTACAATTTGTGAAATAT GTGGACATATAGCGAGTAATATCAGAATATCTGACTTCAATAAGGTTGTTAGTTCTTTGAAGGAGTACGAGGCGTTGAGG GAAAGAACTGCTAGTGGAGGTCCTGGTCCTGCACAGGCTCATGGAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTAT CCGGAGGCAACGACTAAGTGAAATTGCACTGTGGTTTTGTCCTCACAATAGCAGCAATGTTAACAACTTTAGCAATGTGG ATACAGTTTCACAGGTTGTTTCGGAGCATCCTTTGAATATTGTCATCGAAGATGCTGGCCCTGCACAGAATCCTGCTACT AAGTGGGCTGTAGAAGGCACCGGGATCCTGCTTGCTACGGGGCTGCTCACTATCACCCTTGCATGGCTTATAGCTCCTCG TGTTGGAAAGGTACATAGAATTGAATATCAATTGCATTGAGTACCTAAAAAGATACTAATATATCTGTATGGAAAGTTCT TGCCTAGATGTTCTTTGTTTGCATGTGCCTACAATACATATGCATTCACAGACCCTTGCCATGTTTCTATGTAACCGTTT TCAGTTTACCTTGAACTTGTACATTTACAAAATAATTGTAGGCTTATATTTTCAGAACTTTGTGATAGAAACGTGCTGCA TGCATTGAGTCAGGCATAATGCTTTATATGGTGTTCACGAAGTGAATCCTAGGAGACCAAGCTGAGATTTGCATTCAATT GAACATACCATATGCGTTACAAGTCGCGTATTAAATACATGGGTCACACTTTAACCCTAATGCATAACCGTACCCCCATT ACGCGGCTGTAGGTGCCATCGACCCGGTGACGTGTTTTGAATTATTCAAATATTACATGATACAATGAACTACCTAGATT CTAGATAGCTCACTTGATAAGTTATGTTGCCTTCACGAATGAAATCGCCCACTTAAATGTAAAAGCCCAGTCACCTCTAT ATCCTTTCATCTGAACTCGGCCTGACTACTGGACTTTCGGACCTCAGTCAGTAATACCAGCCCACATGGTAATTGTTCAC TTTCCTCATTTAAATGAACTCCTATACAAGGGTTACTTCTCAGTCTGAACATACCATTAAGATTTATCTGCGAGAACCTC ATTTATGTATTAAAAACGTGATAAAACCTGAGTACAATTCAGGGCTATAGAGAGGAGAAAGTGTTAATCATTTTAAAGTT CATGAGTCAGATTTTGCTTGTGGTATATATTTTGAAATATGTTCATTTTTATGCTTGGTATTATAAGCCCTTCATTTACA TACAGTCCTTATGAGTCATGATATCAAGTAAAATGGATCTTGATTTCTGTTTTATATATCGTGACTAGAAAGTATGAGGT AGGGGTAGAATACATGGCATGCCAACCAAGCAATCATTTCAACTTACTCTAGCTCTTGAAAATTGATTTCCCAGGGACAT GTTTCTTTTGTTACCACCTTTTCCTATTAGTTTGGGTGATGATGCTGGGATTGTTTCTTCTATAGAGGCCTGTCCTTTCC TTTTTCATCACTTTACCTTGCATGACTCACATTTGAATGACAGGGAACCTTGTGAAGTACAGTCTCTCTGTTCGTACTTG GTCTTATATATCTCTCACTTTCAGTCCATTGTGGTGGGAGAGTTAGACTTTGGCCTTTATGGAGAGTTCACTTGCATGTC TTTCTTTCTGTTTCTAAGACGCACGCACTTGTAATCTTCAAAGATTCCTTCTTGACAAACCCAAAGCTTCGTCCAAGGTC GAGTCTTTAGTTTGGATGATGTCACATGACACATTTAATTCAAAATCACTTGTTGCAACTTCGTTGACCTCACATCTCAC TTTTTCTGGTGTAATATGTGCAAATCTAGCTATGAAAAAGTATGTCACTTGTTGTTGCAATGCAAGGTCGGCTACATTCC TTTGGAACAATCTTTTTTGAGCCTTAGGGAACATTAGTTGCGTGCCCCCACACTATAAGGCTTGAACATTTTTATGGGTT AACTTTGAAGTATGTCTCTTTCAAGGTTTTGGCAAAAACATAGAGGCTAAAAGCCTAAAACGTTTTGTGTGCCTTTGTTG CTATTCCTCAGTTTATGTGGCTGCAGTGTAATGCTTGTATGTTTAAGGGTGCTTCTGACCAAGTAACTTGATTTGGTTGC CTCCTTATGGCTACATCAAGAGAGTAGCTGCTTACTACTCATGGGCTCATGGCTTCTTCAAGAGAGTTACAATTTTGGAT GGGCAGATTGATAAGACAGCCTTATGGCATTCCTAGCTTTTTTCTAACATTTCTTTGTATATTATCATATACGTTTGGTT TTTTTGGGTTTCATTCTTGTTGTATTTTGGATTATGGTTATATGTCTGGGTTGCTTCCTCCCTGTTGATTTTGATAAAAA AGCACATGCCTAATACAACCTATATTTGTTGTTCAGAAAACTGCAAGAGGTGGTCTTCATATCCTACTTGGAGGTGTTTG TGCTTTAACAGTGGTGGTTTTCTTCCGCTTTGTAAGTACTTTATCTTCCTTTCTTTGGTTCTCTGTTGCATTTTGTTAAA GAAAATTGTTATAAACTTGGTTATTGCTGGCTGGTTAAAACTTGCTTGTGGTTAAAAATAATTAGATACAAAACCCGCAC ATTGTATCAGTAACTTAAATATCTAGCATGAGAAAGCAAAGCCTTTGTCAATGATATTTGGAAATTTATTAAATCTTCTC TCCATCCACCAATGGAAATAGATATGGAAAAACTAGTGGAGGCAGAAATCACTTAGGTATGTGTCATCAATATATTATGT AAAATTAGGTATAACAACTAATTAGTTTTAGATACTTGAAAAAATGTGTAACCGATGGTTTTCTGATATAACTAGCTTGA TGTTCTTAATCAAAGAATTTAATTTTCATGCAATCAGTCTAATTATATCATAAAAGAAACTAAGTTAGCTGAAAAGTCAG GTAGGAAATGAGAATTGTGGATTGTCATTGAAGCAGTAGCTCAAGAGCCCTCATAGCGTGACTGTATTTTTGTTCAATCT CAACCAGCTCAGAACTTTGAAAAATTGAGTGAATTATTTCCAAAATTATGATAGCAGGAACTACAAAAACAAAATATACA TAAGATGCTTGATCTTAGTGGGCATATTTCTGCAAGTTTTATTTATTTCAATTCTGGTGCTAATCAGAATCTAATTATTT CTCTTGTATATATACTGTGTTATTGCAGTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGT TCATTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGACCCCTTACTACAGCG CTTTAGCATTTTCTCTCAGCCCTCCCCTTTGTCACTCTTGTTTCATTTCCTTGTCAATCCATTTGACTTTTGAGATTGTA GATATTCACTTTGATACAACTTGAGGGTCTATTCATTTTTGTGAAATGTAAATTAACAGTTATGCTGTTACACTCAAATG AGTTAACATATGTATTCTCTGTGTGCTTGGTTAGTTAAGAAACTGCAAACCATTTTCTCTATTCATATTTTATCCTCTCA TTTTCTATCTTATCACTTTCTCTCGTAAAACAAACACGCCTTAAAGGAAACCTCGCATTATAAATAATTAAGTCTATTTA TGTTTTGAAATGATAAATCAAACGTTATAAACTATTTGGTGGGTACTCAGGTTAAGTGCCAGCCGCCATAAGATTCTTCT CAACACAAGGTTCTATCAGGCTCCAACAGCAGAAACGTAGGTGCTGCTGGTTCTGGTAAC
CDS sequence (LotjaGi4g1v0412700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTGGAGAAAATGTGTCAGCAATGCCAAAGGAAAAACTCCGTAATGAAAGCTCCTCAAGTGTTGAAACTGGGGA TTTAGAATCTCACTCTCGCCTTAGCCTCGAGAAGGAAGTAGCCTTGGAAAGTTGCCGGGTATGCCAGTGTGCTGAATCTG ATAAAAGAGGGGATGCTGCCCTAGAATTTCTGGGCATCATTCCAGTTTTAGAGAGCAAAGGGGAAGAAGTAGGGTCTGAT GGCGTGGGGATTGCGAAAGATAACCGAAATGTTGAGAACGAATCTCGGGTGGTGGAATTTGTTAGCCCGGATGGCGAGGT TTTCGTTTGTAAGAGTGATTTGGAACTGGGGTTGTCTCATCAAGATACGTTAGTTGAGCTCGGTTGTTGTTGTAAAAATG ATCTTGCGTTAGTACATTATGCGTGCGCGCTTAAGTGGTTTATTAACCATGGATCTACAATTTGTGAAATATGTGGACAT ATAGCGAGTAATATCAGAATATCTGACTTCAATAAGGTTGTTAGTTCTTTGAAGGAGTACGAGGCGTTGAGGGAAAGAAC TGCTAGTGGAGGTCCTGGTCCTGCACAGGCTCATGGAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGC AACGACTAAGTGAAATTGCACTGTGGTTTTGTCCTCACAATAGCAGCAATGTTAACAACTTTAGCAATGTGGATACAGTT TCACAGGTTGTTTCGGAGCATCCTTTGAATATTGTCATCGAAGATGCTGGCCCTGCACAGAATCCTGCTACTAAGTGGGC TGTAGAAGGCACCGGGATCCTGCTTGCTACGGGGCTGCTCACTATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAA AGAAAACTGCAAGAGGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTT GTGCTCACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGTTCATTTTCTGGTTTCTTGTCTTTGGAATATG GGCTTCTCGGACGCACAGTGCCCATACAACGTGA
Protein sequence (LotjaGi4g1v0412700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIPVLESKGEEVGSD GVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGH IASNIRISDFNKVVSSLKEYEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHNSSNVNNFSNVDTV SQVVSEHPLNIVIEDAGPAQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARGGLHILLGGVCALTVVVFFRFF VLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 265 | 265 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 12 | 356 | 345 | 6.4E-148 | – | |
| PANTHER | 12 | 356 | 345 | 6.4E-148 | – | |
| MobiDBLite | 13 | 29 | 17 | - | – | |
| ProSiteProfiles | 99 | 165 | 67 | 12.944 | ||
| Gene3D | 106 | 163 | 58 | 1.5E-5 | ||
| SMART | 109 | 159 | 51 | 5.6E-4 | ||
| SUPERFAMILY | 124 | 161 | 38 | 2.47E-6 | – | |
| Phobius | 266 | 289 | 24 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| Phobius | 290 | 300 | 11 | - | – | |
| TMHMM | 300 | 322 | 23 | - | – | |
| Phobius | 301 | 320 | 20 | - | – | |
| Phobius | 321 | 331 | 11 | - | – | |
| Phobius | 332 | 349 | 18 | - | – | |
| TMHMM | 332 | 349 | 18 | - | – | |
| Phobius | 350 | 357 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0412700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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