Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0412700 |
| Transcript ID | LotjaGi4g1v0412700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT5G08750.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4JKK0|SUD1_ARATH Probable E3 ubiquitin ligase SUD1; TrEMBL-Plants: tr|G7LF16|G7LF16_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi4g1v0412700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78846429..78850988) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGTGTGTCAATGTGTAATAGAGAAAGTGCCAAAGTATTAAGAGAGTAATAAGCACTGCACTGAAAAACAGTAACTGC TGAAGGAGAAGAAGAAGAAGAAGGAGAAGGTAATAGCATGTGAAAGTGATGCACCAAAACCTAGCGTAACGTGTAACTCA CAAAAACCAGTTCTAGCTCTCAATTCCGTCACGCCTCGTTCCAAATTCAATTCCAATTCACAGTAAGATACACAACTCTC CTTTTTCACATTCCATTTCAATTCAATGTCGTCCTTCTTCTTCATTCCTATGCGATTTCTTGTAACTCAAATTCATCATT CTTCAATTTACGTTTCATAGAGTTCATTCAGGTTTCAATTTTATTGAATCTGTTTCTTCATAGTAAAATTTAGGCTTTTG TGATTGTTTTATTGAACCAGAATGGGACTATAATCCTGAATGCTCAAACGGTGTGTTTCAAATTCAATCTAAGGATAGAA TTTTGATCAGATGGGTGGTGGAGAAAATGTGTCAGCAATGCCAAAGGAAAAACTCCGTAATGAAAGCTCCTCAAGTGTTG AAACTGGGGATTTAGAATCTCACTCTCGCCTTAGCCTCGAGAAGGAAGTAGCCTTGGAAAGTTGCCGGGTATGCCAGTGT GCTGAATCTGATAAAAGAGGGGATGCTGCCCTAGAATTTCTGGGCATCATTCCAGTTTTAGAGAGCAAAGGGGAAGAAGT AGGGTCTGATGGCGTGGGGATTGCGAAAGATAACCGAAATGTTGAGAACGAATCTCGGGTGGTGGAATTTGTTAGCCCGG ATGGCGAGGTTTTCGTTTGTAAGAGTGATTTGGAACTGGGGTTGTCTCATCAAGATACGTTAGTTGAGCTCGGTTGTTGT TGTAAAAATGATCTTGCGTTAGTACATTATGCGTGCGCGCTTAAGTGGTTTATTAACCATGGATCTACAATTTGTGAAAT ATGTGGACATATAGCGAGTAATATCAGAATATCTGACTTCAATAAGGTTGTTAGTTCTTTGAAGGAGTACGAGGCGTTGA GGGAAAGAACTGCTAGTGGAGGTCCTGGTCCTGCACAGGCTCATGGAAATACTGGTGTGGATCCTGATGCTGTGGCTGCT ATCCGGAGGCAACGACTAAGTGAAATTGCACTGTGGTTTTGTCCTCACAATAGCAGCAATGTTAACAACTTTAGCAATGT GGATACAGTTTCACAGGTTGTTTCGGAGCATCCTTTGAATATTGTCATCGAAGATGCTGGCCCTGCACAGAATCCTGCTA CTAAGTGGGCTGTAGAAGGCACCGGGATCCTGCTTGCTACGGGGCTGCTCACTATCACCCTTGCATGGCTTATAGCTCCT CGTGTTGGAAAGGTACATAGAATTGAATATCAATTGCATTGAGTACCTAAAAAGATACTAATATATCTGTATGGAAAGTT CTTGCCTAGATGTTCTTTGTTTGCATGTGCCTACAATACATATGCATTCACAGACCCTTGCCATGTTTCTATGTAACCGT TTTCAGTTTACCTTGAACTTGTACATTTACAAAATAATTGTAGGCTTATATTTTCAGAACTTTGTGATAGAAACGTGCTG CATGCATTGAGTCAGGCATAATGCTTTATATGGTGTTCACGAAGTGAATCCTAGGAGACCAAGCTGAGATTTGCATTCAA TTGAACATACCATATGCGTTACAAGTCGCGTATTAAATACATGGGTCACACTTTAACCCTAATGCATAACCGTACCCCCA TTACGCGGCTGTAGGTGCCATCGACCCGGTGACGTGTTTTGAATTATTCAAATATTACATGATACAATGAACTACCTAGA TTCTAGATAGCTCACTTGATAAGTTATGTTGCCTTCACGAATGAAATCGCCCACTTAAATGTAAAAGCCCAGTCACCTCT ATATCCTTTCATCTGAACTCGGCCTGACTACTGGACTTTCGGACCTCAGTCAGTAATACCAGCCCACATGGTAATTGTTC ACTTTCCTCATTTAAATGAACTCCTATACAAGGGTTACTTCTCAGTCTGAACATACCATTAAGATTTATCTGCGAGAACC TCATTTATGTATTAAAAACGTGATAAAACCTGAGTACAATTCAGGGCTATAGAGAGGAGAAAGTGTTAATCATTTTAAAG TTCATGAGTCAGATTTTGCTTGTGGTATATATTTTGAAATATGTTCATTTTTATGCTTGGTATTATAAGCCCTTCATTTA CATACAGTCCTTATGAGTCATGATATCAAGTAAAATGGATCTTGATTTCTGTTTTATATATCGTGACTAGAAAGTATGAG GTAGGGGTAGAATACATGGCATGCCAACCAAGCAATCATTTCAACTTACTCTAGCTCTTGAAAATTGATTTCCCAGGGAC ATGTTTCTTTTGTTACCACCTTTTCCTATTAGTTTGGGTGATGATGCTGGGATTGTTTCTTCTATAGAGGCCTGTCCTTT CCTTTTTCATCACTTTACCTTGCATGACTCACATTTGAATGACAGGGAACCTTGTGAAGTACAGTCTCTCTGTTCGTACT TGGTCTTATATATCTCTCACTTTCAGTCCATTGTGGTGGGAGAGTTAGACTTTGGCCTTTATGGAGAGTTCACTTGCATG TCTTTCTTTCTGTTTCTAAGACGCACGCACTTGTAATCTTCAAAGATTCCTTCTTGACAAACCCAAAGCTTCGTCCAAGG TCGAGTCTTTAGTTTGGATGATGTCACATGACACATTTAATTCAAAATCACTTGTTGCAACTTCGTTGACCTCACATCTC ACTTTTTCTGGTGTAATATGTGCAAATCTAGCTATGAAAAAGTATGTCACTTGTTGTTGCAATGCAAGGTCGGCTACATT CCTTTGGAACAATCTTTTTTGAGCCTTAGGGAACATTAGTTGCGTGCCCCCACACTATAAGGCTTGAACATTTTTATGGG TTAACTTTGAAGTATGTCTCTTTCAAGGTTTTGGCAAAAACATAGAGGCTAAAAGCCTAAAACGTTTTGTGTGCCTTTGT TGCTATTCCTCAGTTTATGTGGCTGCAGTGTAATGCTTGTATGTTTAAGGGTGCTTCTGACCAAGTAACTTGATTTGGTT GCCTCCTTATGGCTACATCAAGAGAGTAGCTGCTTACTACTCATGGGCTCATGGCTTCTTCAAGAGAGTTACAATTTTGG ATGGGCAGATTGATAAGACAGCCTTATGGCATTCCTAGCTTTTTTCTAACATTTCTTTGTATATTATCATATACGTTTGG TTTTTTTGGGTTTCATTCTTGTTGTATTTTGGATTATGGTTATATGTCTGGGTTGCTTCCTCCCTGTTGATTTTGATAAA AAAGCACATGCCTAATACAACCTATATTTGTTGTTCAGAAAACTGCAAGAGGTGGTCTTCATATCCTACTTGGAGGTGTT TGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTGTAAGTACTTTATCTTCCTTTCTTTGGTTCTCTGTTGCATTTTGTTA AAGAAAATTGTTATAAACTTGGTTATTGCTGGCTGGTTAAAACTTGCTTGTGGTTAAAAATAATTAGATACAAAACCCGC ACATTGTATCAGTAACTTAAATATCTAGCATGAGAAAGCAAAGCCTTTGTCAATGATATTTGGAAATTTATTAAATCTTC TCTCCATCCACCAATGGAAATAGATATGGAAAAACTAGTGGAGGCAGAAATCACTTAGGTATGTGTCATCAATATATTAT GTAAAATTAGGTATAACAACTAATTAGTTTTAGATACTTGAAAAAATGTGTAACCGATGGTTTTCTGATATAACTAGCTT GATGTTCTTAATCAAAGAATTTAATTTTCATGCAATCAGTCTAATTATATCATAAAAGAAACTAAGTTAGCTGAAAAGTC AGGTAGGAAATGAGAATTGTGGATTGTCATTGAAGCAGTAGCTCAAGAGCCCTCATAGCGTGACTGTATTTTTGTTCAAT CTCAACCAGCTCAGAACTTTGAAAAATTGAGTGAATTATTTCCAAAATTATGATAGCAGGAACTACAAAAACAAAATATA CATAAGATGCTTGATCTTAGTGGGCATATTTCTGCAAGTTTTATTTATTTCAATTCTGGTGCTAATCAGAATCTAATTAT TTCTCTTGTATATATACTGTGTTATTGCAGTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTT GTTCATTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGACCCCTTACTACAG CGCTTTAGCATTTTCTCTCAGCCCTCCCCTTTGTCACTCTTGTTTCATTTCCTTGTCAATCCATTTGACTTTTGAGATTG TAGATATTCACTTTGATACAACTTGAGGGTCTATTCATTTTTGTGAAATGTAAATTAACAGTTATGCTGTTACACTCAAA TGAGTTAACATATGTATTCTCTGTGTGCTTGGTTAGTTAAGAAACTGCAAACCATTTTCTCTATTCATATTTTATCCTCT
CDS sequence (LotjaGi4g1v0412700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTGGAGAAAATGTGTCAGCAATGCCAAAGGAAAAACTCCGTAATGAAAGCTCCTCAAGTGTTGAAACTGGGGA TTTAGAATCTCACTCTCGCCTTAGCCTCGAGAAGGAAGTAGCCTTGGAAAGTTGCCGGGTATGCCAGTGTGCTGAATCTG ATAAAAGAGGGGATGCTGCCCTAGAATTTCTGGGCATCATTCCAGTTTTAGAGAGCAAAGGGGAAGAAGTAGGGTCTGAT GGCGTGGGGATTGCGAAAGATAACCGAAATGTTGAGAACGAATCTCGGGTGGTGGAATTTGTTAGCCCGGATGGCGAGGT TTTCGTTTGTAAGAGTGATTTGGAACTGGGGTTGTCTCATCAAGATACGTTAGTTGAGCTCGGTTGTTGTTGTAAAAATG ATCTTGCGTTAGTACATTATGCGTGCGCGCTTAAGTGGTTTATTAACCATGGATCTACAATTTGTGAAATATGTGGACAT ATAGCGAGTAATATCAGAATATCTGACTTCAATAAGGTTGTTAGTTCTTTGAAGGAGTACGAGGCGTTGAGGGAAAGAAC TGCTAGTGGAGGTCCTGGTCCTGCACAGGCTCATGGAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGC AACGACTAAGTGAAATTGCACTGTGGTTTTGTCCTCACAATAGCAGCAATGTTAACAACTTTAGCAATGTGGATACAGTT TCACAGGTTGTTTCGGAGCATCCTTTGAATATTGTCATCGAAGATGCTGGCCCTGCACAGAATCCTGCTACTAAGTGGGC TGTAGAAGGCACCGGGATCCTGCTTGCTACGGGGCTGCTCACTATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAA AGAAAACTGCAAGAGGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTT GTGCTCACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGTTCATTTTCTGGTTTCTTGTCTTTGGAATATG GGCTTCTCGGACGCACAGTGCCCATACAACGTGA
Protein sequence (LotjaGi4g1v0412700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIPVLESKGEEVGSD GVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGH IASNIRISDFNKVVSSLKEYEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHNSSNVNNFSNVDTV SQVVSEHPLNIVIEDAGPAQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARGGLHILLGGVCALTVVVFFRFF VLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 265 | 265 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 12 | 356 | 345 | 6.4E-148 | – | |
| PANTHER | 12 | 356 | 345 | 6.4E-148 | – | |
| MobiDBLite | 13 | 29 | 17 | - | – | |
| ProSiteProfiles | 99 | 165 | 67 | 12.944 | ||
| Gene3D | 106 | 163 | 58 | 1.5E-5 | ||
| SMART | 109 | 159 | 51 | 5.6E-4 | ||
| SUPERFAMILY | 124 | 161 | 38 | 2.47E-6 | – | |
| Phobius | 266 | 289 | 24 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| Phobius | 290 | 300 | 11 | - | – | |
| TMHMM | 300 | 322 | 23 | - | – | |
| Phobius | 301 | 320 | 20 | - | – | |
| Phobius | 321 | 331 | 11 | - | – | |
| Phobius | 332 | 349 | 18 | - | – | |
| TMHMM | 332 | 349 | 18 | - | – | |
| Phobius | 350 | 357 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0412700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…