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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0413400 |
| Transcript ID | LotjaGi4g1v0413400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyketide cyclase/dehydrase and lipid transporter; TAIR: AT5G08720.1 polyketide cyclase/dehydrase/lipid transporter; Swiss-Prot: sp|Q02572|CYPC_STRCN Putative polyketide cyclase; TrEMBL-Plants: tr|G7LFP8|G7LFP8_MEDTR Polyketide cyclase/dehydrase and lipid transporter; Found in the gene: LotjaGi4g1v0413400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78916341..78922235) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATCTGTTTAGTAAATAGAAAATTGTGGCCTTTAAAAACTTTGAAAATTGTGGATAAAATAGAAAATGACGACACG TGGCGGCAACTGGAGCCACCAATTCATATGCAGCAGAAAACTCTGTTTGATGAAGAAGAAGCTCTGTTTCATCTTCTCCA AACACACCACTCATACTCATGAACACTACCACATGCTGTAGAGCTTCTTCAACCACCAACCTTGGACTTGGACCCCACCA CCTTGTTCCTCTGCGACTGCACTCCATTTCCAAACCACCATTTCTGTCTCTCACCCTCTTCTTCCCCTTCCACCATCACA AGACCACTCCTCTCTCCTCAACTCAGTTCAAACCCAGAACCCATTTTGGCAAAGAAGGGAACTTCACTGCACCACAAGAA GAAGAAGAAGAAGAAGGTGACCGCGAAGTCCACTGTGAGCTCCACGTGGTTTCTTGGAGGGAACGGACAGTCAAAGCAGA GATTTCCATCAATGCTGACATTCATTCCGTTTGGAAAGCTCTCACTGATTACGAGCACCTCGCTGATTTTATTCCAAATC TTGTGTGGAGGTAATGAAAGTTTTGATTTGGAAGCTATTTGTTTGTTTGTTTATGAGTGTTGTTTTGTTGTTAGTGGACG AATTCCTTGCCCACATCCGGGGCGGATATGGTTAGAGCAAAGAGGGTTTCAAAGGGCTATGTATTGGCATATAGAAGCTC GTGTTGTGTTGGATCTTCAAGAGATACTCAATTCTGTAAGCATTCTTAAACATTCCATGTTATTTTTCAATAGATTCTGT TTGTAACTGGGAAATGTACACCTAGGATTAGGAAGAATGGATTCATGGAACACTTATGCAATATACAACAAGTTTTAGTA ATTATAGGGGAAGATGAAGATAGTTGCAGTATAACATATAAAATCAACATAAAGTTAAGAAGTTGTGATGCTTCTCATCT GTATAAATATAAATAAACTAGAAGTTAAATAAAGAAACTTGATGTGAGTTGGAACTTAATACTATTTAATTCTCTTATTG CTTCAGGTGTGGGATCGGGAACTTCGCTTTTCCATGGTAGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCTGTAAA ATCAGGAACAAGGTAGGATCTATACCTATGAGAGCCCTTGCTTACTACTATTTACTAAGTAACCTTGCATAGTGTAAAGA AACTATATTTTGATTTACTTGTGAACTCACTGAACAGTGTTACTCAAGGTTGCCTCATTCAAAACCAGCATGCTTATATG TATTACTCCATGCTAATTTAAAGTCAGAACCCTCTAAGTTCTGATGACTGAAGAGGTTCCAACTTTGACCTTTGTCTAGA CATATTTATGTTATATATACCATAAGTTTGAATCTGTGGGACTCCCTTTTAGATTCAAGGAAGTTCATATATGACTCTGT TGAATAGTACCATATCAATGTGTTTTGAACTTGAATTTTTGAATTTGTTATTCTTTTGTATGGGCCAAAATGCGATTATA TGAGAGGGAGTGAAAGAAACACTTAACTTAAAGCAAGTAATGATATCCATACTATATATTAATGAATTATGAACCAGATA TGACAATGAAGCTTAGCTATCCCTTTTGTTTACTGTTTTCATTTTCCATTGCCACAGAACTTTTTGGATCTTCCAATTCT TTTTCTTGCAGGTCATCATCAACAATTTTATCTTATGAAGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTT GGAAAGGATAATCAGATCTGATCTTCCTGTTAACCTCAGAGCCTTGGCATATAGAGTTGAAAGGAATATTACGGGGAATC AGAGACTTCCCCTGCAAGAAAATAACTTGCATAAAAATTCTATGGCTAATGCGCCACCTGTCGAAAAGATAAATGGTACT TTGTGTGAAAGTGATAAATTGCTACCTGGAGAGAACAAAGAAGGTTTGGCCAGCTCGATTTCTGGTTCCTTGCCCACAAG TTCCAGTGAGGTCAACAGCAATTGGGGTGTATTTGGAAAAGTTTGTAGACTTGACAGGCCTTGTGTGGTGGATGAAGTTC ATCTCCGCAGATTTGATGGACTTTTGGTAACCTATCCTTTCTAAATTGTTAGGAGCTGGCTTTAATTCTGAGAATGAGCC ATATTTGTTGTCAAAGTTACAAATAAAATTATATTCATGTGAAGGAAAATGGAGGTGTACATCGCTGTGTTGTTGCAAGC ATAACAGTTAAAGCTCCTGTTCGTGATGTTTGGAATATTCTGTCTTCCTATGAGACTCTTCCTGAGTAAGTTATTTATCG TTCTTCTTTACACTAAGGAAAACAATGATGTGAAAGATTTCTAGATCTTATGTTCCAATTTTTTTTACTTGTTGCAGGAT AGTTCCAAATTTAGCTATCAGTAAGGTTTTATCAAGAGATAATAATAAAGTCCGCATTCTTCAGGTAAGATTGCATGTTG AGCAGAGTCTACAGTGAGAGAAACATAGCTGTTAATATTTTTCCAGCCACTGTGTTATGCTTACCAACCATTGTTTTACC ATCGCCATCCACCGTAAGCAAACTACCGAACCATTTACATGGCACAAATGCTAATATAAGAATGAATTTGCGATACAGTG TTATCCATAAATTATGTTATTGATGTAATTTCCTGGATGTATCAATGTGTAGGAAGGGTGTAAGGGCCTGCTTTACATGG TGCTTCATGCTCGGGTTGTGTTAGACTTGTGGGAGCACCTTGAACAAGAGATCAGTTTTGAACAGGTTGAAGGGGACTTT GACTCATTCCAGGGAAAATGGATTTTTGAACAACTAGGAAATCATCATACACTGCTGAAGTATTCTGTTGAGTCAAAAAT GCGCAAAGATACTTTCCTTTCTGAAGCTATCATGGAAGAGGTGTCTCTACTTGTCTGATTTGGTTGATTATCAATTACAT TGCTTTTAGTATTTAGCTTGATTATTTCCAAGAATTCAACACCCTACTTTTCATTGTTGTCCACCTAAGACAGCCTTTGC ATAAAAACTGGAAAGGAGCTCTGTTATCTAACTCAATGCGCTTGGCCTATATCCATGTCTCTTTTTACATAAGAAAACTG TAAAAATCTGTTTACCTTTGTTTGTTTAGATACAGTCTTTTGAAGGTAAATTGATCCACTTAAATGCCGCTCCAAACAAT ACACACCCACACATATACACACACGCATACACATTGAGTATTTGAATGCCTGAAATATTGCCAGTTCTTCTACCTCAGGT CATTTATGAAGATCTCCCATCAAACTTGTGTGCAATAAGAGACTATGTTGAGAACAGGAAAGCGTCAAATTTTTCGGAAG TTTGTGAGCAGAATACAAAGTCAGAGCAACAAATTAATTCATCTGGCTCTGGAGATGAAGACAGCTGTGGTTCAGCTGAC AACCTTTCAGATTGCGGTGGTCAAAGCAGCTCCTGTCAACAAAGGCCAAGAGTTCCAGGCTTACAGAGGGATATTGAAGT CCTAAAATCCGAACTCACGAAATTCATTGCTGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGC ACAGTCGAGTGGATATTGAAAAGGCTATAACCCGCATGGGTGGATTCAGGAAGATCGCAACAATAATGGACCTCTCTCTG GCTTACAAACACCGCAAACCCAAAGGTTACTGGGACAATCTTGAAAATATGCAAGATGAGGTAGGCTGCAAAGTTCCATT CTTGATACCAGAATGATAAATGTTATGCATCTAGGAAAGATTATTTCATGACAAAGCCATTACGTTGTTTATAGTTTCAA CAGAATATAATTCATTTCTTTATGCAGATAAGTAGATTTCAAAGAAGCTGGGGAATGGACCCTTCTTTTATGCCCAGTAG AAAGTCATTAGAGCGCGCAGGTAGGCTTTGATTTATTGCTTCACAACAAAATTTTAACTTCACTCTCTCTCAAGTCACTA ATACAAATCCTTGTACAATTGACTCTAGCTCAATCATAATTGATTCTTGCTTTAGAATCAATTATGGGAAGAAGCTTCTG TGGGTTGCTTCTGGGTATCTCTAGGTTGATTCAAACATGCTATAAGAAAGATGGCGGAACCTGTAAATATTACACATCTA GGGCTTCTTCCCACTTCATTTTGAACTTAGGAGTGTGTGAATTTTCCCGCAGGGCGCTTCGATATAGCACGGGCACTGGA AAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCTGTCCCTCAAAGTGAGGAGGAAACGAAGCAGACAACACAACCTTG TCAAGGACAAGAAAATTGATCCTATAGCAGAACCTGATGTAGATAGTGAGATCAAGGAACCATCTAGACCTTGTATTTCT CAAGATACACACAAGTGGCATACAAAACTGAAACAGTTGGACATAAATTGGATAGAGTAAAAACAGCATTGATGTACCGT ATTGGTTTTATGTATATCCATGCATTGATAGTAACATAACTCCCAGCACTCAGATTTGCCCTGTTTTCCTGGTTTATGTA TGATTGAGAATGTGTATGAGTGTCCAGCTAAGTAGTTAACTAATTAAAAATTTGCATCTTTGATCATGTAAGCACACAAT AGACTAAAGAACTATAGATACAATATCATCATAATCAAAAGTAGAATACATTAATTGACATTCAGCGCCGTAAACACTTA TCCTATACTTTCAAATTAAACAACAAGCTATGCAGCACCGTATATATCTTCCTTCTTGTCCACCTTGGCTTCAATTTAGA ATTAGAACACCACAGAGGAAGAAGCACTCTCGTACTTAACCATATGATCTAGGGACATGTGACTTGGTTCCTCGCGGAAA GAAGGTAGCAGAGAGGTTAGTTTGATGTCGTAGATTCTGGAATCAGAGATGCCATCCCAAGAGTGAGAGGGCAAGGTGTG AGCATAGCCAAGGTGGTTGCCGCACCCACGGCAGAGGAGCTTGGTTCTCCTGCGCTGGAACAGACCCCATTGGCGGCGCT TGGAGCTGAAAAAGGGTATCCACGACCAGGGAAGTTGTTGGACCTGAGTGAACCTGCTCTCATCCAAAGAGAAGAAGGAG ATGAGACCTTTCTTTATGGACTTTCCATATCCGGAATCAATGAGGGAGGTGTTGCGGTTGCTGGAATTCAAGTTTAGCTC ATAACCACACGAGCCACAGCTGCAAGAGGAATAGATGGTAGTTTAGTTTGCATTTGAAAGCTCAAAAATTCAAAATCGAA CAGTGAAGTGGACTGTGAACACACACACTCATGATACATAGTAAGTAGTACATGTAGAGGGAGAGTGAGAGAGATAGAGG ACCTGTAATTTACATCTCTGATAAAGGAAGAGAGGTGAAGTTGTTGACATTGGGATGATCCCTCAAGCATGTCACTATAG GGGATCATCCTTCACTCCTTTGTATGTGCTAGGACTTGAGGTAGACAGAGAAAGAGAGTTTATAGTGAAGAAGAGCTTCA GAGACACATGGCCGGTGGCCCCATTTATCAGCTCATAACGGTAACAATAGAAAGCAACAAATTATAATCATTTTAATATG CATTGGACCGTCAAAAAAAAATGCATTGGAGTATTGGACTACTTTGGAGTTTGGAGGTGTCCACATTAGCCCAATGTTAC AAGTTTCTATTACCATATTTCTCTTTCACCTCCAAGAATATATTTTGTCCCTTATATTTGGACAGTAGATTTTTTTTATT TTTTAGTTTCCCCACGGTTTTTTCAGTTGCAAATATTTCTTTTGAAAATATCATCCAATTTTGTTAAGAGTTGCGATGAC ACTAGAGAAGTCTGCAAGACAACCATCATCATCCTGTTCGAATCGCAGGAAAAAT
CDS sequence (LotjaGi4g1v0413400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGACATTCATTCCGTTTGGAAAGCTCTCACTGATTACGAGCACCTCGCTGATTTTATTCCAAATCTTGTGTGGAGG TAATGAAAGTTTTGATTTGGAAGCTATTTGTTTGTTTGTTTATGAGTGTTGTTTTGTTGTTAGTGGACGAATTCCTTGCC CACATCCGGGGCGGATATGGTTAGAGCAAAGAGGGTTTCAAAGGGCTATGTATTGGCATATAGAAGCTCGTGTTGTGTTG GATCTTCAAGAGATACTCAATTCTGTGTGGGATCGGGAACTTCGCTTTTCCATGGTAGATGGAGACTTTAAGAAGTTTGA GGGCAAATGGTCTGTAAAATCAGGAACAAGGTCATCATCAACAATTTTATCTTATGAAGTTAATGTGATACCAAGATTCA ATTTCCCAGCTATTTTCTTGGAAAGGATAATCAGATCTGATCTTCCTGTTAACCTCAGAGCCTTGGCATATAGAGTTGAA AGGAATATTACGGGGAATCAGAGACTTCCCCTGCAAGAAAATAACTTGCATAAAAATTCTATGGCTAATGCGCCACCTGT CGAAAAGATAAATGGTACTTTGTGTGAAAGTGATAAATTGCTACCTGGAGAGAACAAAGAAGGTTTGGCCAGCTCGATTT CTGGTTCCTTGCCCACAAGTTCCAGTGAGGTCAACAGCAATTGGGGTGTATTTGGAAAAGTTTGTAGACTTGACAGGCCT TGTGTGGTGGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGAAAATGGAGGTGTACATCGCTGTGTTGTTGCAAG CATAACAGTTAAAGCTCCTGTTCGTGATGTTTGGAATATTCTGTCTTCCTATGAGACTCTTCCTGAGATAGTTCCAAATT TAGCTATCAGTAAGGTTTTATCAAGAGATAATAATAAAGTCCGCATTCTTCAGGAAGGGTGTAAGGGCCTGCTTTACATG GTGCTTCATGCTCGGGTTGTGTTAGACTTGTGGGAGCACCTTGAACAAGAGATCAGTTTTGAACAGGTTGAAGGGGACTT TGACTCATTCCAGGGAAAATGGATTTTTGAACAACTAGGAAATCATCATACACTGCTGAAGTATTCTGTTGAGTCAAAAA TGCGCAAAGATACTTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTCCCATCAAACTTGTGTGCAATA AGAGACTATGTTGAGAACAGGAAAGCGTCAAATTTTTCGGAAGTTTGTGAGCAGAATACAAAGTCAGAGCAACAAATTAA TTCATCTGGCTCTGGAGATGAAGACAGCTGTGGTTCAGCTGACAACCTTTCAGATTGCGGTGGTCAAAGCAGCTCCTGTC AACAAAGGCCAAGAGTTCCAGGCTTACAGAGGGATATTGAAGTCCTAAAATCCGAACTCACGAAATTCATTGCTGAACAT GGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCACAGTCGAGTGGATATTGAAAAGGCTATAACCCGCAT GGGTGGATTCAGGAAGATCGCAACAATAATGGACCTCTCTCTGGCTTACAAACACCGCAAACCCAAAGGTTACTGGGACA ATCTTGAAAATATGCAAGATGAGATAAGTAGATTTCAAAGAAGCTGGGGAATGGACCCTTCTTTTATGCCCAGTAGAAAG TCATTAGAGCGCGCAGGGCGCTTCGATATAGCACGGGCACTGGAAAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCT GTCCCTCAAAGTGAGGAGGAAACGAAGCAGACAACACAACCTTGTCAAGGACAAGAAAATTGATCCTATAGCAGAACCTG ATGTAGATAGTGAGATCAAGGAACCATCTAGACCTTGTATTTCTCAAGATACACACAAGTGGCATACAAAACTGAAACAG TTGGACATAAATTGGATAGAGTAA
Protein sequence (LotjaGi4g1v0413400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTFIPFGKLSLITSTSLILFQILCGGNESFDLEAICLFVYECCFVVSGRIPCPHPGRIWLEQRGFQRAMYWHIEARVVL DLQEILNSVWDRELRFSMVDGDFKKFEGKWSVKSGTRSSSTILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRVE RNITGNQRLPLQENNLHKNSMANAPPVEKINGTLCESDKLLPGENKEGLASSISGSLPTSSSEVNSNWGVFGKVCRLDRP CVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNILSSYETLPEIVPNLAISKVLSRDNNKVRILQEGCKGLLYM VLHARVVLDLWEHLEQEISFEQVEGDFDSFQGKWIFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPSNLCAI RDYVENRKASNFSEVCEQNTKSEQQINSSGSGDEDSCGSADNLSDCGGQSSSCQQRPRVPGLQRDIEVLKSELTKFIAEH GQEGFMPMRKQLRLHSRVDIEKAITRMGGFRKIATIMDLSLAYKHRKPKGYWDNLENMQDEISRFQRSWGMDPSFMPSRK SLERAGRFDIARALEKWGGLHEVSRLLSLKVRRKRSRQHNLVKDKKIDPIAEPDVDSEIKEPSRPCISQDTHKWHTKLKQ LDINWIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 647 | 622 | - | – | |
| PANTHER | 45 | 647 | 603 | 0.0 | – | |
| PANTHER | 45 | 647 | 603 | 0.0 | – | |
| SUPERFAMILY | 47 | 161 | 115 | 9.09E-9 | – | |
| Gene3D | 47 | 164 | 118 | 3.8E-14 | ||
| Pfam | 83 | 155 | 73 | 2.8E-13 | ||
| Gene3D | 262 | 419 | 158 | 1.2E-31 | ||
| CDD | 264 | 405 | 142 | 1.3622E-55 | – | |
| SUPERFAMILY | 265 | 409 | 145 | 3.93E-21 | – | |
| Pfam | 270 | 401 | 132 | 1.1E-20 | ||
| MobiDBLite | 420 | 459 | 40 | - | – | |
| MobiDBLite | 420 | 458 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0413400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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