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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0414900 |
| Transcript ID | LotjaGi4g1v0414900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Magnesium transporter NIPA (DUF803); TAIR: AT2G21120.1 magnesium transporter, putative (DUF803); Swiss-Prot: sp|Q8GWX2|NIPA6_ARATH Probable magnesium transporter NIPA6; TrEMBL-Plants: tr|K7KRA0|K7KRA0_SOYBN Probable magnesium transporter; Found in the gene: LotjaGi4g1v0414900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79039931..79043956) extracted from Lotus japonicus Gifu genome v1.2.
ATGACCTCAACCAATTTCACCGGTTTCATCTTGGCCGTGGTTTCCAGTGCTTTCATCGGCTCCAGCTTCATCATCAAGAA AAAGGGTCTTCAACTCGCCGGTGTTAACGGTCCTCGTGCCAGTCTGTCACCTTAAATCCCTTCCTTTTCATTTTCCCCCA AAATTGCTAATCATTCATTCATACTGTGTATTGCATTGTACAGGTGTTGGTGGCTATGGTTACTTGCTTCAACCTCTCTG GTGGGTCGGAATGATTACCAGTATGTACTTATTGTGTTTCCATTTATGTTTGGGAAAACAGCTTAATTAAGCGCTTATGG TTATAATCGTTTAGGCCCCGTTTGAAAAAACAACTTAATTAAGCACTTATGGTCATAAGCCACCATAAGCGCTTATGACA TAATCACTTATTCATAAGCTATTTTAATTTTTTTATTGAAATAAATTGAAAATAAGCTGTATATAAGCATAAACTCTTTT TCATAAGCTATCCCGAGTAGTTTATGAAAATAAGCTCAAAACAACTTATGGTAGCCGGTAGGCCATAAGCTGTTTGTATA AGCTCTGCCAAACACTTACACAAGCGCTTATGCTATCAAATAAGCTCTCCCAAATGGGGCCTTATTCATAAGCTATTTAA AATAAATTATTGAAATAAATTGAAAATAAGCTATATATAAGCATAAGCTCTTTTTAATAAGCTAACCTGAGTAGCTTATG AAAATAAGCTCAAAACAGCTTATGGTAGGCTATAAGCTATTTGCATAAGCTCTCCCAAACACTGACATAAGCGTTTATGC TATCAGATAAACTAAAATAGGCTCTCCCAAACAGGGCCTTAGTCTTTACTTCAATGTTTTCCGAATTTTTAATTATTTGT CTTGTTCCAGTGATTGTTGGAGAGATAGCGAATTTCGTTGCATACATTTACGCCCCGGCTGTGCTTGTTACTCCACTTGG TGCTTTGAGTATTATTGTTAGGTAAGCATTCACTAAATCACTTATGTTCTTTATGTAAGGATGCTTTGTTTACTTTGTTT CGAATTTCGATTACCTTTCTGCTGAGCTAAGAGTTGCTATGAACTTGGTTAGTGCTGTCTTAGCGCATTTCCTCTTGGAG GAGAAGCTGCAGAAAATGGGCATGCTGGGGTGTCTTCTATGCATTGTGGGATCTACTGTTATTGTGCTCCATGCTCCTGA AGAGATGTCTCTTAGTTCTGTGCAAGAAATTTGGGAACTGGCCGTTCAACCCGGTATTCTATCAGGGTTTGATTTACTTT CCATTGTGAAATGCCCTGTGGCTATGTGGTTAATGGGTGTTTCCTGATTTTTGCTTTCTATTTTGGGTTACAGCGTTCCT CTCGTACACGGCCGCAGCCATTGCCGTGACATTGGCTCTTGTTTTGTATATTGCGCCCCGCTTTGGCCAGACTAATATTT TGGTTTATGTTGGAATATGCTCTGTAATTGGGTCCTTAACTGTAGGTGACTCTATCCAATTAACCTTGTCAGTTATCACT ACTTAATATGTGATAATTTTTTATCATTTTGGATAGTCCTGTTTTTCTGATAAAAATCTTACTTCTCAGGTCATGAGTGT GAAAGCAATTGGCATTGCAATGAAACTTACATTAGAAGGCGCAAACCAGTTTTTCTACTTTCAGACATGGATTTTTTCTA CGGTTGCTATTACCTGCATCATTATCCAGCTAAATTACCTTAATATGGTAAGTATCACTTATTTTATTGTGAAAAGTAGT TTTTGCATCGTGACATGAAGTGTTAAAATTCTCTGGCTTCTTTTAGGTATTTCATTGAATTCTTTTGCTTTTTTCTTTCT GCTAGAGATATTTATTATGCAGGGTTAATTTGATTCTTTTAATCTTTTTAAAAACAAGTCAGTGTTCTCTACTAATTAAG CTGGCTCTTTAAAAGTGACTGGTGTATTTTTCATACTGCTGTGAACTGTTCATCCTACAACTTGGTCCATTTGTCTAGAC TGAAGAATTTTAACTTTTAGGTTCTGATCATACTTCTATCAGTTTCATCTTTACTTTCCTTTTCTTTGGTTGTTAACTAT CATTATGGTCGTATTGTGTTTTCCTTGCCATTCTTTTCACTCCATGTGTCCATTGAAGTTTTGTTCAACCTTCTTGAAGG CTATGAAGTAATCTAGAAGTCCAAGATGTAAACCTCTAATTCAAATAACATCCATGTAATGCTTGAGCTGAAGCCCACCA TAAGAACTTTTATTTACTGGAGTGTTGTTTCCATACCTTTTAATTGTTATCATTTTCTTGCCATGGGATCTTCAATCTGG GCTTCTGTGCTAACCAATTCTTGCACGGTTGCAGGCACTGGATAACTTTAATGCAGCAGTTGTTTCTCCAATCTATTATG CATTGTTCACAGCTTTTACAATATTAGCCAGTTTAATCATGTTTAAGGTTGGTATTCTTCAGAAACATAATAAGAAAATT TGTTTGCAGAAGGAGACATTTTATGATTCAACTATTATAATCCTTCCTCTCCTGCTTTTCTTATTCAGGACTATTCTGGT CAAAGTATAAGCAGTATTGTGTCAGAGTTATGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACAAG AGAACCGGATCCTCCAGCCATTACAGGTAATATCTCATGCACCATAGTCTACCGTGGAGAACTTGGATAAGATAGACTTC TTACCGCGGACAGAACTAGGAAAAATATACCGTAAATTAAACACATATTTAGTAAAATCAGCAATAGCTCATTGGAGTAG ATATTATAAACAAAACTTAGGGGGCGAATACACTATTTGAATACCATTCTATTAAGAATTTTTCCTCTTTGTGGGGGGGG GGGGGGTGCGATTGCCCCATTTTTTTAAAAAAAACTTAGTCTGTCCCCTGCTTCTTACGAATTATATGTGGTAATAGAGA GTATCTAGCTTTGCTTGACCTATTGGGTTACTTGACCTTATTAATTGTTTAACCTGTTAAATAGTATGTTTACACCAAAG GCTAAACATAATACAAATTTTAGATAACTTGAAATAGATGCTCATGTTTCCTTGTTGCTGACTACTAGCTCCAGTTTTTA CTTGTTAGTAGTCATGCAACTAAATGATTGATGATTTTTTTTCTTACATTAAATATTGGAGGAAAAAAATATAGGGAAGA TTTATGAATACATGTCATGTAAGATTCGTGAGATAGCTACATCTTGGATCTAAATATTAATATGGATTACCTAGACGTTG ACAATTGCTAGAAAATAATGAAGCTGTCCTGACCCATTTGAATACCAAAGTCGTTCAGTATGCTATTTCCTTAAGGTTTT AGCTTTTGGTGCTAAGCACTGAATATTACTACATCTTGGATCTAAATATTAATATGGATTACCTAGACGTTGACAATTGC TAGAAAATAATGAAGCTGTCCTGACCCATGTGAATACCAAAGTCGTTCAGTATGCTATTTCCTTAAGGTTTTAGCTTTTG GTGATTAAGCCAAAATTGTAGTAATATTCAGTGCTTAGCAGCAAAAAATAAGGGAATTATTATGTTATGGGGTCAGTTCA CTGCTGAGAAGTTTGAACTATCTAGATAAATGAGGGTGGGAAATCTTCCTAAATAGAAAAAACAAGCAGAGTACAGTGAA CTAAAGTGGCTCAAAAGTACAATAAAGCGATCGAGTTTCATTACATATCAATATTACCACCACCATTGTCTAATTTGTGT ATTGTAAATCTTGCCCTAATAGGATTTCAATATTTAAGGGCAGACTCTGATTTCTTAGCATAATTGGATGTGTTGAGTGT TGAGACGCTTCCTAGTGATCTTAAATCTGATTAAGTGATTGTTCTTCACATGCAGATTTATATACACCATTGTCTCCTAG AGTATCATGGTATATCCAAGGCAATGGTGAACCCTGGAAACAGAAAGAGGAAGATGTTCCACCCATTAATTTAATCACAA TTATACGGCAAGATCATTTCAAGTGA
CDS sequence (LotjaGi4g1v0414900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGTGAAAGCAATTGGCATTGCAATGAAACTTACATTAGAAGGCGCAAACCAGTTTTTCTACTTTCAGACATGGAT TTTTTCTACGGTTGCTATTACCTGCATCATTATCCAGCTAAATTACCTTAATATGGACTATTCTGGTCAAAGTATAAGCA GTATTGTGTCAGAGTTATGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACAAGAGAACCGGATCCT CCAGCCATTACAGATTTATATACACCATTGTCTCCTAGAGTATCATGGTATATCCAAGGCAATGGTGAACCCTGGAAACA GAAAGAGGAAGATGTTCCACCCATTAATTTAATCACAATTATACGGCAAGATCATTTCAAGTGA
Protein sequence (LotjaGi4g1v0414900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVKAIGIAMKLTLEGANQFFYFQTWIFSTVAITCIIIQLNYLNMDYSGQSISSIVSELCGFITVLSGTTVLHSTREPDP PAITDLYTPLSPRVSWYIQGNGEPWKQKEEDVPPINLITIIRQDHFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 45 | 45 | 9.2E-58 | – | |
| PANTHER | 1 | 45 | 45 | 9.2E-58 | ||
| Pfam | 1 | 44 | 44 | 2.1E-11 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 43 | 24 | - | – | |
| Phobius | 44 | 127 | 84 | - | – | |
| PANTHER | 46 | 117 | 72 | 9.2E-58 | – | |
| PANTHER | 46 | 117 | 72 | 9.2E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion transmembrane transporter activity | Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other. | ||
| Biological process | Magnesium ion transport | The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0414900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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