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LotjaGi4g1v0418100.1

Overview

Field Value
Gene ID LotjaGi4g1v0418100
Transcript ID LotjaGi4g1v0418100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A; TrEMBL-Plants: tr|A0A1J7ISV6|A0A1J7ISV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79340212..79346409) extracted from Lotus japonicus Gifu genome v1.2.

CTTCTTTTTCCTGACTATTAAAAGTTGAAAGTAACCAACAGCCTGTCGTTATTACACCTTCTCTTTCCTTTCTCAAGCTA TGCATACCAGGAAGAACCCCTATATTTGGAAATAAAAATTAAAAAATTCAAGCTATTAAAATATTTAGTTGAACTTGTTA AACTGAACACATCATTCAGACCCTTTTTGTGTTTCATTGCTCGAGCTTGTTCTCTCTCTCACTCTCTGTCCACCCAAGTT TCAAGTTTTCAACTTTTAACACATTGTCCACAGTACTCCTCCTGTCTGCACAAATCCACAAGTTCATCTTCACTAGTGGC TAATAAGGTATGTTTTTTGGAGATTCCTTCTTAATATGACATGCAATCCTATCTCTTTCTGTCATTATTTTTCAAAACCA TCAAAGAAGGAAAAAATTACATTTCCTTAAATTCACTGTCCAGTGGTAGTAGTGGTAGCGGTGAGAGGAAGCATTAAGCA TCCTCCTGCTGCAAGTACTAGTCCTTTCCATGATTCAATCTTTTAATTAATATTTTCTTTTTTCTTTTTTAACATTTAGT TGCTACATATGCAGTTGGTAACCTTCTCTTTTGCAACTTCCAGTTTCCTTGGAACTCTATCTACTTGGATGCTAGGTAGT TAGACATTAATTATGAGATTTTTTTAACACTCTTGCTGCAGGTTTCTTCTCTCCCTCTCTCTCTTTTCCCTAATAAGGAC AAACAAGTTTCTAAAATGTTTGTATAGATGTGCCTATTTTAGTATTTTATAGCTGTGTTTCTTGATTAATTTTCTCTTTG TATTCATTCAACTTAGAAGCATTCTTTGGGCTGCAAAAGTAGTGATTATGGAATGGAATTTGAAAGCAAGTTCTTGGGAT TTGAGTGAAGTGGATCAAGCAGCAACCATACCCAACATAGAAACAGTGGATCATGGTTCAATTAACAGATTTGGAGTTTA CAGAACAAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAATTGGGGAATTCTAGCAATGAATTGGTGGCTGCCAAGT CCAAATTAGATGTTGCTGCTGGTGGTGTCTCCAAAATGACTACTACTACACCTTCTTCATCATCTTCAGGATCATCTAAG AGAGCTAGAGCCATTAACAATGGGACTCAGAGAGTGTCATGTCTTGTGGATGGATGCCAATCAGATCTTAGTAACTGCAG GGACTATCACCGGCGCCATAAGGTCTGTGAGCTCCATTCCAAGAGTGCTCAGGTCACAATTGGTGGCCACAAGCAAAGAT TCTGCCAACAGTGTAGCAGGTGCATGTATCATATGAATCTTTGTGTTTCAATGCATGTTTAGTTTCACGATTTGCACAAA ATATAAGACAAAGTTACTAAAAAGCTAAGACTTGTAGCTTCACACCATAAGTGATTCTGAAGCATTTTAGTGCGGAACCA ATCATGCTATCAGCATATGAATATCATATTTGGTTCCAAGGTAAAACAGTCTATAATCAATTCTGGCTAGAAACTATAAA TCTTAACTTCCTAATAAACGGATCTTGAATTCGATGTAAATCGCCAGATACATGAAATTGTTTATTTACATTCTAGTATG CTTTTGATTTGTCCTCTTAATGTATTTTTTCTTCTCTTGTTGCTGTACCTAGTAGGCATCTATGTTATGTGCCAATATTC ATGCTAACTTCACAAGTAGGCTCGCTATAGTTACCTTCTTATGTTATTTTTAGCATCTTAATCTAGTGTTCATATAGGAA AAGTAGAAGCACAGTTGATGTAGGAGCTTTTTAAGATAATTTTAGTATTTTAGTAATTTTACTTATTTGTAATTAAGATC TTTTAGGATCTTAATTATTTTTTGTTAGGAACTTATTTATTTTCAATTAGGATCTTTTATTTTCAATTAGGATCTTTTAG GATATTATTTATTTTACTATTAGGATATTTTCTTTTCTTATTTAAGCACTTGTAAGGCATAGCCTATTGGAGTTTTGATT GATAATAAAATTTAAGAGTTTTCTCTTCTTCTCTGGTGGATTCCAGTGTATTTTCTAGGGTTTTAGCGCTTGCTAATTTC CTTTCTGGTGGATTCCAGAAACCTTTTCCTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGTATCAAGTGGTA TCAGAGCAGGCTTTCTCCTGTCTCTTTTCTTTGCTTGATCAACCATGGAAGATCAACCAATGACCAAAGCAGACCTGAAG GATGTTACCGTGGCTCTTACCGCGGCCCTAACTGCTATTACGCAACATATGACACAACAGATGATACAACATATGGCGAC GTTCACGGCGGCTTTAACGGCGCAGATCAACAATACCAACAACGGTAACCGGGGACGAGACAGGAGAGGGAAACCACATA GGTTTCCGCGCGACAACAACAACAATCGTTCCGCTATATCTTTACCTTCCCAATCTTTGCATTCACCATCCGTATCTCAT CCTTATTACCAAGTTCAGTACTCAACCTCTAAAACCACCGAAACTCCACACCCCCAACCTGCTACTCCAAACCTTATCAA TCCTTACCCCAAAATATCACCGACTGCAGATCCAATTTCCTTACCACAACCCCTACCAAAACCTACTTCAAATTCATGTC CCTCTACAAGACCTATGTACGCAACTTCTTCGGAATCTGATTCTCAAATTTCATTTGCGCCATCCTCTGTTGTTGGCCTG GAAGATGAGGCAAAAACGTAGCACAGTACTTTACAAGAAAGGAATCCCAATAGACGAAGCCTATATTCTGCTAATCCCCA GCTAAAATTCCTGAATATCTTATATGGTTAATTTAGTTTGTATAGTCTTTAAGAGACCACCCTCTTTCAAGTCCTATAGC TTTACCATTAGATTCTGCAATATAAACTACTTCCCACACACACACACTTAGTAGATTGCTCGACTCTTTAAGCATTAAGT CGAGTTTTTTATTTATCTTTGGATGATGTGTATGAAGAATGATTTGTTATGAACGACCTACACGTTTAATCTGATCTCAG AGCTTTAAGAGGATTAGTCTCATAGCTGTCAGCTGTTAGGATAATCTTGGTACACACCAAAATAGATAAATAGAGAAAAA TAAAGTTTCAAAATTAAAGAGAAAGTTCAAAACAGCAATAGTTATGAAACAAAGTATTACTTGGCTTGGGTTCTTCATTA AATTCTGAATCTTTCCTTTGTGTAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAGCGCTTA GATGGTCACAATCGACGGAGGAGAAAGCCCCAACCAGAACCACTCACGAGATCTTGTGATTTTTTGTCCAATTACCAAGG TTAGTTTCCAGTACTTTGTAGCTACATTATCTGAGTGGACCCATTTGTTCCCAGATTTGGAGCAGACACTTGCTGTGTAT CCCCACAAAGGTACACAAATCTTAAAAGAGAAAGAAGTAACACAATTACACAAAGGCACACAGCTAGCTCAGTGTGCTGC CACCATCCCTGATTTGGGTCCACTGATGTGTCCTCCCTCATGATAATCTAGTGGCCACTAAAATAACATGTCAGTACTCA CACATTAACAGACACAAACTGACAAAAGGCTTTTGCTTTTGAGAGAGGGGAGGCTAGTGTGTCATGTCATTTGTTCGTTA ACAGTTGTCCATTGCTTAGATATTTCTTACACGGTTTGGACTTTGGACATTTCTTCACACACATCGAGTGCAATTCTTGG TTAGGCCTGGATACCTAAGGTAGACTGTGCTTTTGTACATCTCAAACTAGGATTTGAGTGTGTTAGACCAAGACATTACT TTGAGGTAGAGATGGGTATATGGGCTCAGACTCGCAAGTTGGTTGGCTCGCGTAACTCGCAGCTCACCCGGGTTTTTTTT GTGTGTCAACGGTAAACATTTCATTGATAGCATGGGCCAGGCCCATAACCCAAGAGGGTAGTACCACTGGTTGGGCAAAC CTATAGAGAAATACAAGTAAGTTTCTTACACTTGAGCCCATGACTCCTATCTACACCTAACCCAAAGTTAGAACTAGGAG GTTAATGACAACTACTTGCAAAAACAAACAGGCCCAATAGCTCTGAGCCCAAGAAGAATGGGCCAGACAAACCTTAGCCT TCAGGGTCTCCAAACCCTATCCAGGCTGGTCTAAGTTCAGATTTTTACCGGTCCTTTGATTTAATGGGTTGTGGCTCATG GGCTCACGAATGAGCCCGCCGGCCATATCTTTTTTGAATGAAAAATTAAAATTGTAAAATTTCTATTAATGTGTTAGTTT GTGGGATATATTTAAAGTGTTTTTGATTAACTTGACACATTTCATAAATTTTAAGGATTTGTTACAATTTTCTAGTAATT TTATTAAGTGGTATGTGCATTTAAAAAAAAAAAATTAAGTGGTACGTGGGTCAAATTGTCGGCCCACGGGTTAAGCGAGT AGAGACGAGCCTACAGTGCAGGCTTTTCTAGCTTGATCAGTTAATTAGCGGGCCTAAATAGGCTTGGCTGGCCCATTACC AAGCTCTACTGAGAGTGTTTTCTTCATATATTCAATAATCATAAAGTTACGAGGTTGTCTAACTTATCTCATGAGATTAT ATAACTACATCACACGTTTAAGAGTTTTACACACTTTTCACTTGAATTCTTGTTAATAATATTACTGGTCATAATCTCAT GACATAAATTAGACAATCTCGAGAAGTATTATCTTGTTTTCACTATTATTTCATTTAAAGTTTTTTTTACACAAGGAAAT ATATAAAGTAATATTTTTATAGTTACTAATGAAACAAAAAAAAAAATTCGTTAAACTTGAATGTCTCTCTCTAAGTACAT GTCTAGATTGGGTTGGTTTATCTCGCTGGGATCTGTTTAGATGTTATCTGGTAGTGGCTTAGGAACTGGGCATAAGCTAG TGCAGGGGATGGGAATGTAATATGTAATTGTTCTATATTGATGAGAATGTATAATAGCTATGAAGTGTAGACAATTATTC ATCTTGGGGTTGGATTTGTGTGTATGTTATCCTTTGACTAAGTATTGCTTAACCTACTATCTTTAATGGGATGGGGTACC TTTGCTCTCTTTATAATTGGATTTTGCCTATAAAAAAATATGTTTGGGTAAATGATGGAAAATTACAGTGAAACAATCAT GGTGGACAGAGAAGTTAATTTTGTCCATCATGACCAGACTCACCATGGTTTTCCACATGCTCTAAGTAACCAAGGCTACA ATGTAAGACAGTAGAGGGAGTCAATGTCTGAATTTACTACTACTTTTATCAGGCACCCAGCTGCTGCCCTTCTCAAGTCC ACATGTATACCCTTCCACTGCTGTGGTGAACCCTGCTTGGGCTGGAGTTGTTACTTCCGCTGCAGATGTTAGGCTCCACA GCCACAACCAACACCAGCAACAAATCCACATGGTTGATAAACAGGACCTTTTTCTTGGATCTTCTCCATCCAGCTATAAA GAAGGGAAGCAAGTGGCATTCATGCCAGGTGACCAAAACCCACATCTTCCAGCTGCTTCCATAGGCCATAAGTTTGGCAG GCCTAGCCCTTTTGCAGAAAGTGATGGGCTGAGATGCAAAAACATGTTCTGTGATAGCCTAACAAGTTCAGTCCAAGAGT CCTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGGCACACAACACTGCAGGAAATGGGTTTAACCAAATGGTGAACCCT CACTCATCCCTTATGCAGCCCTTGGGCCTGAGCCTGCATGATAACAGCATGGGGCCCGTGTACTCAGGTTGTGATGACCA TTGTTCATCAATGTATAACGTGGGTTCTAGTGGGTCCCAGGGGAATGAAGCCCCTTCAATGTTCCCCTTTCAATGGGAAT AGAGGGTTTTAGGTTTTATCACAAGTACTTTTTTAATTATCAACTTATCTCTGGACAAGGCAATGAGGACTATCACTTAG CAAAACATTGGTGTGAATTTTTTAAGTGGTGGGGTTGCTACCGTGCATACAATCCACTATTGCAGTACATTTTTTTCCTG ACTGAATGCAGCACCATGTTTTCAAAGGGAAGAGTAATGTCTCTACTTGCACATACAATGTCTCTGTGTGGCTTAAAGGA CTAAATAAATAAAAGATAGGAGTAAAATATGATTTGCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0418100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATGGAATTTGAAAGCAAGTTCTTGGGATTTGAGTGAAGTGGATCAAGCAGCAACCATACCCAACATAGAAACAGT GGATCATGGTTCAATTAACAGATTTGGAGTTTACAGAACAAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAATTGG GGAATTCTAGCAATGAATTGGTGGCTGCCAAGTCCAAATTAGATGTTGCTGCTGGTGGTGTCTCCAAAATGACTACTACT ACACCTTCTTCATCATCTTCAGGATCATCTAAGAGAGCTAGAGCCATTAACAATGGGACTCAGAGAGTGTCATGTCTTGT GGATGGATGCCAATCAGATCTTAGTAACTGCAGGGACTATCACCGGCGCCATAAGGTCTGTGAGCTCCATTCCAAGAGTG CTCAGGTCACAATTGGTGGCCACAAGCAAAGATTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAA GGAAAAAGAAGCTGCAGGAAGCGCTTAGATGGTCACAATCGACGGAGGAGAAAGCCCCAACCAGAACCACTCACGAGATC TTGTGATTTTTTGTCCAATTACCAAGGCACCCAGCTGCTGCCCTTCTCAAGTCCACATGTATACCCTTCCACTGCTGTGG TGAACCCTGCTTGGGCTGGAGTTGTTACTTCCGCTGCAGATGTTAGGCTCCACAGCCACAACCAACACCAGCAACAAATC CACATGGTTGATAAACAGGACCTTTTTCTTGGATCTTCTCCATCCAGCTATAAAGAAGGGAAGCAAGTGGCATTCATGCC AGGTGACCAAAACCCACATCTTCCAGCTGCTTCCATAGGCCATAAGTTTGGCAGGCCTAGCCCTTTTGCAGAAAGTGATG GGCTGAGATGCAAAAACATGTTCTGTGATAGCCTAACAAGTTCAGTCCAAGAGTCCTCTTGTGCTCTCTCTCTTCTGTCA TCACCACAGGCACACAACACTGCAGGAAATGGGTTTAACCAAATGGTGAACCCTCACTCATCCCTTATGCAGCCCTTGGG CCTGAGCCTGCATGATAACAGCATGGGGCCCGTGTACTCAGGTTGTGATGACCATTGTTCATCAATGTATAACGTGGGTT CTAGTGGGTCCCAGGGGAATGAAGCCCCTTCAATGTTCCCCTTTCAATGGGAATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0418100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEWNLKASSWDLSEVDQAATIPNIETVDHGSINRFGVYRTKGEFSVDLKLGQLGNSSNELVAAKSKLDVAAGGVSKMTTT TPSSSSSGSSKRARAINNGTQRVSCLVDGCQSDLSNCRDYHRRHKVCELHSKSAQVTIGGHKQRFCQQCSRFHSLEEFDE GKRSCRKRLDGHNRRRRKPQPEPLTRSCDFLSNYQGTQLLPFSSPHVYPSTAVVNPAWAGVVTSAADVRLHSHNQHQQQI HMVDKQDLFLGSSPSSYKEGKQVAFMPGDQNPHLPAASIGHKFGRPSPFAESDGLRCKNMFCDSLTSSVQESSCALSLLS SPQAHNTAGNGFNQMVNPHSSLMQPLGLSLHDNSMGPVYSGCDDHCSSMYNVGSSGSQGNEAPSMFPFQWE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31251
4 391 388 9.3E-187 –
PANTHER
PTHR31251:SF84
4 391 388 9.3E-187 –
MobiDBLite
mobidb-lite
74 94 21 - –
Gene3D
G3DSA:4.10.1100.10
96 166 71 4.8E-32
IPR036893
ProSiteProfiles
PS51141
102 179 78 31.633
IPR004333
SUPERFAMILY
SSF103612
103 184 82 9.29E-38
IPR036893
Pfam
PF03110
105 178 74 3.0E-30
IPR004333

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0418100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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